Wall clock time and date at job start Fri Apr 10 2020 18:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00382 * 2 1 4 4 H 1.48502 * 109.47286 * 239.99863 * 3 2 1 5 5 H 1.48507 * 109.46867 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47186 * 119.99671 * 3 2 1 7 7 C 1.38814 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99753 * 148.08624 * 7 2 1 9 9 N 1.36933 * 120.00224 * 328.07950 * 7 2 1 10 10 C 1.46496 * 120.00016 * 323.76167 * 9 7 2 11 11 C 1.52995 * 109.47455 * 263.56479 * 10 9 7 12 12 O 1.42908 * 109.47136 * 65.00234 * 11 10 9 13 13 C 1.46498 * 119.99955 * 143.76086 * 9 7 2 14 14 C 1.53038 * 109.46033 * 300.00193 * 13 9 7 15 15 C 1.53196 * 109.31240 * 181.38481 * 14 13 9 16 16 N 1.46920 * 108.77590 * 305.36631 * 15 14 13 17 17 C 1.34780 * 120.63248 * 233.58773 * 16 15 14 18 18 O 1.21277 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00260 * 180.02562 * 17 16 15 20 20 H 1.09004 * 115.55053 * 51.05046 * 19 17 16 21 21 C 1.52996 * 117.50255 * 196.75884 * 19 17 16 22 22 C 1.53002 * 60.00221 * 107.48956 * 21 19 17 23 23 H 1.08994 * 117.49617 * 107.48986 * 22 21 19 24 24 C 1.50697 * 117.51871 * 252.52296 * 22 21 19 25 25 O 1.20825 * 120.00242 * 337.05741 * 24 22 21 26 26 O 1.34228 * 119.99673 * 157.05558 * 24 22 21 27 27 C 1.46926 * 118.74060 * 53.60840 * 16 15 14 28 28 C 1.53043 * 109.46041 * 60.07143 * 13 9 7 29 29 H 0.97003 * 119.99898 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47437 * 23.56907 * 10 9 7 31 31 H 1.09007 * 109.47186 * 143.56374 * 10 9 7 32 32 H 1.09001 * 109.47182 * 184.99646 * 11 10 9 33 33 H 1.08998 * 109.47388 * 305.00299 * 11 10 9 34 34 H 0.96691 * 114.00176 * 179.97438 * 12 11 10 35 35 H 1.09003 * 109.44986 * 180.02562 * 13 9 7 36 36 H 1.09002 * 109.49634 * 61.43741 * 14 13 9 37 37 H 1.08998 * 109.49629 * 301.33284 * 14 13 9 38 38 H 1.09004 * 109.58793 * 65.15363 * 15 14 13 39 39 H 1.08996 * 109.58625 * 185.43514 * 15 14 13 40 40 H 1.08998 * 117.50386 * 214.97671 * 21 19 17 41 41 H 1.09007 * 117.49455 * 359.97438 * 21 19 17 42 42 H 0.96703 * 116.99834 * 180.02562 * 26 24 22 43 43 H 1.09005 * 109.59038 * 66.17885 * 27 16 15 44 44 H 1.09005 * 109.59328 * 186.60638 * 27 16 15 45 45 H 1.09000 * 109.49900 * 58.66270 * 28 13 9 46 46 H 1.08995 * 109.49381 * 298.56789 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9678 -1.2731 -0.4939 9 7 1.4808 -2.2981 0.6280 10 6 0.7219 -2.1354 1.8705 11 6 1.6415 -2.3882 3.0668 12 8 2.6558 -1.3824 3.1089 13 6 1.6733 -3.6334 0.0569 14 6 1.0643 -3.6804 -1.3463 15 6 1.2369 -5.0876 -1.9266 16 7 2.6598 -5.4497 -1.8740 17 6 3.3046 -5.8635 -2.9828 18 8 2.7099 -5.9402 -4.0370 19 6 4.7641 -6.2318 -2.9125 20 1 5.0334 -6.9383 -2.1273 21 6 5.5369 -6.3117 -4.2305 22 6 5.7842 -5.1483 -3.2681 23 1 6.7246 -5.1421 -2.7171 24 6 5.2523 -3.7942 -3.6614 25 8 5.0376 -3.5438 -4.8237 26 8 5.0172 -2.8664 -2.7204 27 6 3.3664 -5.3525 -0.5895 28 6 3.1701 -3.9423 -0.0242 29 1 -0.4850 0.8401 -0.0004 30 1 0.3261 -1.1211 1.9244 31 1 -0.1025 -2.8484 1.8888 32 1 1.0582 -2.3547 3.9870 33 1 2.1064 -3.3690 2.9668 34 1 3.2762 -1.4800 3.8440 35 1 1.1838 -4.3732 0.6904 36 1 1.5704 -2.9581 -1.9869 37 1 0.0032 -3.4375 -1.2906 38 1 0.6568 -5.7990 -1.3387 39 1 0.8922 -5.1013 -2.9606 40 1 6.3148 -7.0708 -4.3128 41 1 4.9895 -6.0982 -5.1486 42 1 4.6759 -2.0129 -3.0209 43 1 2.9601 -6.0854 0.1076 44 1 4.4293 -5.5402 -0.7419 45 1 3.6077 -3.8857 0.9725 46 1 3.6562 -3.2175 -0.6772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:57 Heat of formation + Delta-G solvation = -145.272574 kcal Electronic energy + Delta-G solvation = -30239.228713 eV Core-core repulsion = 26129.671487 eV Total energy + Delta-G solvation = -4109.557226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.92294 -40.79361 -39.20701 -37.78679 -37.35762 -36.86821 -36.18965 -33.75022 -32.24671 -31.83167 -29.41911 -27.19370 -26.51590 -25.46680 -24.50745 -23.49200 -22.25367 -21.74805 -21.32297 -19.94631 -19.25194 -18.61723 -18.14845 -18.01285 -17.40855 -17.21018 -16.65383 -16.39336 -16.02881 -15.93028 -15.64000 -15.47137 -15.07145 -14.82895 -14.48762 -14.31774 -14.06935 -13.87616 -13.71096 -13.28088 -13.11128 -13.04387 -12.91253 -12.77010 -12.62986 -12.46588 -12.37644 -12.07674 -11.98729 -11.82931 -11.66562 -11.61856 -11.53081 -11.42197 -11.07569 -10.86183 -10.57606 -10.28373 -9.61982 -8.48375 -7.77662 -5.19936 1.00607 1.42845 1.43674 1.49535 1.56932 1.86195 2.05410 2.58789 2.70214 3.30646 3.41787 3.57454 3.57976 3.66476 3.86165 4.03214 4.16698 4.19915 4.30853 4.32340 4.42364 4.50451 4.61712 4.66607 4.69994 4.77162 4.83044 4.85063 4.87579 4.90882 4.97328 5.08173 5.10493 5.19010 5.28407 5.50936 5.53260 5.65788 5.72487 5.75878 5.85953 6.43189 6.55158 6.85732 7.11288 7.24560 7.31769 8.01675 8.52169 9.20426 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.004649 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.782403 B = 6021.640038 C = 6736.091018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.029 4.029 3 Si 0.927 3.073 4 H -0.281 1.281 5 H -0.305 1.305 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.049 0.951 9 N -0.582 5.582 10 C 0.146 3.854 11 C 0.070 3.930 12 O -0.577 6.577 13 C 0.174 3.826 14 C -0.118 4.118 15 C 0.120 3.880 16 N -0.595 5.595 17 C 0.520 3.480 18 O -0.589 6.589 19 C -0.156 4.156 20 H 0.191 0.809 21 C -0.113 4.113 22 C -0.139 4.139 23 H 0.195 0.805 24 C 0.494 3.506 25 O -0.553 6.553 26 O -0.502 6.502 27 C 0.114 3.886 28 C -0.130 4.130 29 H 0.243 0.757 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.376 0.624 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.167 0.833 41 H 0.078 0.922 42 H 0.419 0.581 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.592 -16.659 4.099 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.226 4.226 3 Si 0.758 3.242 4 H -0.207 1.207 5 H -0.232 1.232 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.066 0.934 9 N -0.302 5.302 10 C 0.020 3.980 11 C -0.010 4.010 12 O -0.382 6.382 13 C 0.068 3.932 14 C -0.158 4.158 15 C -0.003 4.003 16 N -0.326 5.326 17 C 0.309 3.691 18 O -0.470 6.470 19 C -0.176 4.176 20 H 0.208 0.792 21 C -0.149 4.149 22 C -0.158 4.158 23 H 0.212 0.788 24 C 0.337 3.663 25 O -0.444 6.444 26 O -0.314 6.314 27 C -0.008 4.008 28 C -0.170 4.170 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.222 0.778 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.185 0.815 41 H 0.097 0.903 42 H 0.279 0.721 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.093 0.907 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.898 -16.652 2.868 20.666 hybrid contribution -0.396 2.334 0.012 2.368 sum 11.502 -14.318 2.879 18.591 Atomic orbital electron populations 1.70306 1.06718 1.25431 1.53419 1.25386 0.94914 1.00815 1.01449 0.85970 0.78546 0.81758 0.77958 1.20706 1.23173 1.21104 1.18676 0.98145 0.88620 1.29744 0.93368 1.43907 1.62410 1.01787 1.22057 1.20837 0.91942 1.00327 0.84894 1.22847 0.90006 0.90328 0.97771 1.86773 1.44403 1.53058 1.53942 1.20526 0.94472 0.86861 0.91357 1.22083 0.99980 0.94630 0.99090 1.21540 0.81571 0.96005 1.01220 1.48161 1.10824 1.63698 1.09886 1.20428 0.89327 0.76574 0.82756 1.90692 1.69535 1.55889 1.30922 1.22536 0.87557 1.02483 1.05038 0.79168 1.23288 1.01657 0.97485 0.92517 1.22065 1.02348 0.83237 1.08126 0.78760 1.23170 0.73019 0.87339 0.82730 1.90715 1.50134 1.81087 1.22487 1.84510 1.77211 1.27793 1.41903 1.22041 0.98527 0.97262 0.82984 1.22188 0.97451 0.96115 1.01203 0.94776 0.93902 0.93510 0.93797 0.93268 0.77785 0.91620 0.95345 0.93703 0.89288 0.92181 0.81523 0.90313 0.72095 0.88757 0.87031 0.90665 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.96 12.22 21.65 0.26 -53.70 16 2 C -0.03 -1.59 4.58 84.86 0.39 -1.21 16 3 Si 0.93 46.06 29.66 68.60 2.03 48.10 16 4 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 5 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 6 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 7 C -0.22 -11.51 7.98 84.03 0.67 -10.84 16 8 H 0.05 2.57 6.97 -2.91 -0.02 2.55 16 9 N -0.58 -26.04 2.33 -677.89 -1.58 -27.62 16 10 C 0.15 6.31 5.61 86.38 0.48 6.79 16 11 C 0.07 2.36 7.38 71.98 0.53 2.89 16 12 O -0.58 -21.46 13.44 -148.98 -2.00 -23.46 16 13 C 0.17 6.23 2.59 45.02 0.12 6.35 16 14 C -0.12 -4.59 5.31 30.67 0.16 -4.42 16 15 C 0.12 3.82 6.43 86.36 0.56 4.37 16 16 N -0.59 -16.25 2.97 -818.91 -2.43 -18.68 16 17 C 0.52 15.15 6.45 87.65 0.57 15.71 16 18 O -0.59 -23.13 15.81 -3.02 -0.05 -23.18 16 19 C -0.16 -2.73 4.41 -11.54 -0.05 -2.78 16 20 H 0.19 1.41 7.68 -2.38 -0.02 1.40 16 21 C -0.11 -1.93 9.55 30.59 0.29 -1.64 16 22 C -0.14 -2.48 6.29 -11.54 -0.07 -2.55 16 23 H 0.20 1.64 8.14 -2.39 -0.02 1.62 16 24 C 0.49 14.29 7.04 71.24 0.50 14.79 16 25 O -0.55 -20.85 17.27 21.97 0.38 -20.47 16 26 O -0.50 -14.21 12.43 -51.40 -0.64 -14.85 16 27 C 0.11 2.33 6.34 86.36 0.55 2.87 16 28 C -0.13 -3.79 5.30 30.67 0.16 -3.63 16 29 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.04 2.24 5.94 -2.39 -0.01 2.23 16 31 H 0.05 1.87 8.06 -2.38 -0.02 1.85 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.38 9.47 9.12 -74.06 -0.68 8.79 16 35 H 0.07 2.08 7.88 -2.39 -0.02 2.06 16 36 H 0.03 1.31 7.71 -2.39 -0.02 1.29 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.20 7.01 -2.39 -0.02 2.18 16 40 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 2.06 7.49 -2.38 -0.02 2.05 16 42 H 0.42 11.13 9.10 -74.06 -0.67 10.45 16 43 H 0.09 1.45 8.14 -2.38 -0.02 1.44 16 44 H 0.11 1.59 6.06 -2.38 -0.01 1.58 16 45 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.05 1.90 6.03 -2.39 -0.01 1.89 16 Total: -1.00 -83.62 375.20 0.50 -83.12 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.33 Total: 24.02 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 4.86 Total: 26.72 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -3.75 Total: -99.99 kcal Atomic # 8 Polarization: -79.65 SS G_CDS: -2.31 Total: -81.96 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.10 kcal Total: -83.62 0.50 -83.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.157 kcal (2) G-P(sol) polarization free energy of solvation -83.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds