Wall clock time and date at job start Fri Apr 10 2020 18:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 120.00550 * 2 1 4 4 H 1.48497 * 109.47472 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00789 * 3 2 1 6 6 H 1.48508 * 109.46668 * 60.00192 * 3 2 1 7 7 C 1.38955 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99605 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99701 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00501 * 0.02562 * 10 9 7 12 12 C 1.50709 * 119.99442 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46751 * 180.02562 * 12 10 9 14 14 C 1.46841 * 111.00192 * 66.04558 * 13 12 10 15 15 C 1.53038 * 109.52216 * 174.16012 * 14 13 12 16 16 C 1.53125 * 109.27946 * 59.17894 * 15 14 13 17 17 C 1.53112 * 109.16041 * 302.34786 * 16 15 14 18 18 O 1.42904 * 109.50270 * 297.67566 * 17 16 15 19 19 C 1.52994 * 109.50445 * 177.59556 * 17 16 15 20 20 C 1.50704 * 112.84825 * 302.39678 * 19 17 16 21 21 O 1.20821 * 119.99805 * 354.18341 * 20 19 17 22 22 O 1.34233 * 119.99665 * 174.18902 * 20 19 17 23 23 C 1.53780 * 113.61637 * 73.59243 * 19 17 16 24 24 C 1.54051 * 86.98920 * 140.02043 * 23 19 17 25 25 C 1.53779 * 87.07615 * 334.56860 * 24 23 19 26 26 C 1.46851 * 110.99850 * 301.83303 * 13 12 10 27 27 H 0.97001 * 119.98943 * 359.97438 * 1 2 3 28 28 H 0.96995 * 120.00056 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46761 * 60.00439 * 12 10 9 30 30 H 1.09002 * 109.47211 * 299.99740 * 12 10 9 31 31 H 1.08999 * 109.46431 * 54.14273 * 14 13 12 32 32 H 1.09004 * 109.45769 * 294.16946 * 14 13 12 33 33 H 1.09002 * 109.50575 * 299.23504 * 15 14 13 34 34 H 1.09010 * 109.50376 * 179.11677 * 15 14 13 35 35 H 1.08996 * 109.52116 * 182.43736 * 16 15 14 36 36 H 1.08996 * 109.51692 * 62.25219 * 16 15 14 37 37 H 0.96695 * 114.00535 * 59.91570 * 18 17 16 38 38 H 0.96699 * 116.99579 * 179.97438 * 22 20 19 39 39 H 1.08996 * 113.61566 * 254.61732 * 23 19 17 40 40 H 1.09000 * 113.61447 * 25.51637 * 23 19 17 41 41 H 1.09000 * 113.62120 * 220.02309 * 24 23 19 42 42 H 1.09001 * 113.61319 * 89.11286 * 24 23 19 43 43 H 1.08998 * 113.61657 * 270.88052 * 25 24 23 44 44 H 1.09004 * 113.69148 * 139.98329 * 25 24 23 45 45 H 1.08994 * 109.46060 * 65.82501 * 26 13 12 46 46 H 1.08998 * 109.46289 * 305.85847 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3965 -1.2124 6 1 1.8896 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 7 2.1981 -5.9796 -0.0004 14 6 2.9622 -6.0180 1.2530 15 6 3.8384 -7.2724 1.2796 16 6 4.7902 -7.2498 0.0803 17 6 3.9707 -7.1608 -1.2100 18 8 3.1456 -8.3212 -1.3321 19 6 4.9155 -7.0773 -2.4105 20 6 5.8616 -5.9070 -2.3302 21 8 5.7481 -5.0985 -1.4396 22 8 6.8302 -5.7629 -3.2483 23 6 5.6096 -8.4089 -2.7420 24 6 5.3893 -8.0608 -4.2263 25 6 4.2009 -7.1999 -3.7667 26 6 3.0906 -5.9097 -1.1645 27 1 -0.4848 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6173 -4.9204 -0.8914 30 1 0.6165 -4.9209 0.8886 31 1 2.2735 -6.0380 2.0977 32 1 3.5939 -5.1322 1.3204 33 1 3.2065 -8.1589 1.2261 34 1 4.4172 -7.2925 2.2031 35 1 5.3863 -8.1622 0.0712 36 1 5.4485 -6.3842 0.1541 37 1 2.5204 -8.4377 -0.6036 38 1 7.4124 -4.9964 -3.1556 39 1 6.6593 -8.4386 -2.4501 40 1 5.0525 -9.2857 -2.4118 41 1 5.0988 -8.9156 -4.8370 42 1 6.2031 -7.4831 -4.6648 43 1 3.2593 -7.7467 -3.7161 44 1 4.1128 -6.2538 -4.3008 45 1 3.7216 -5.0245 -1.0856 46 1 2.4952 -5.8511 -2.0756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:17 Heat of formation + Delta-G solvation = -167.049097 kcal Electronic energy + Delta-G solvation = -30477.921860 eV Core-core repulsion = 26367.420333 eV Total energy + Delta-G solvation = -4110.501527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51023 -40.86574 -39.72633 -38.51911 -37.12577 -36.45276 -35.67314 -33.70198 -33.25351 -31.36602 -29.04574 -27.35472 -26.96320 -26.30523 -24.42529 -23.93301 -22.70842 -21.16741 -20.71599 -20.33560 -19.79053 -18.88142 -18.11564 -17.69645 -16.96953 -16.79411 -16.77222 -16.48430 -16.11373 -16.05890 -15.72375 -15.36789 -15.24909 -15.20583 -14.66945 -14.28844 -14.14300 -13.80693 -13.53720 -13.38384 -13.30281 -13.08962 -12.98875 -12.69047 -12.53862 -12.47235 -12.45118 -12.21661 -12.12516 -11.94485 -11.85758 -11.64509 -11.45275 -11.35950 -11.23205 -10.92494 -10.76190 -10.55510 -9.99688 -8.98590 -8.48912 -5.98502 1.13943 1.30475 1.35647 1.49663 1.91725 2.00619 2.25568 2.90406 3.16341 3.21697 3.25702 3.41295 3.62094 3.80887 3.86522 3.98402 4.04654 4.15335 4.21174 4.41186 4.46206 4.50354 4.51880 4.62046 4.63166 4.73902 4.83709 4.89655 4.92795 4.99655 5.02247 5.09485 5.11941 5.17361 5.20823 5.32660 5.38010 5.44229 5.57389 5.72202 5.86751 6.02848 6.07313 6.57534 6.87401 7.00458 7.10354 7.53104 8.10334 8.66713 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.003944 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.726100 B = 7097.147776 C = 7932.710549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.989 3.011 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.331 4.331 8 H 0.072 0.928 9 N -0.572 5.572 10 C 0.403 3.597 11 O -0.608 6.608 12 C 0.049 3.951 13 N -0.494 5.494 14 C 0.037 3.963 15 C -0.105 4.105 16 C -0.151 4.151 17 C 0.186 3.814 18 O -0.547 6.547 19 C -0.086 4.086 20 C 0.493 3.507 21 O -0.524 6.524 22 O -0.503 6.503 23 C -0.098 4.098 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.003 4.003 27 H 0.278 0.722 28 H 0.395 0.605 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.022 0.978 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.393 0.607 38 H 0.424 0.576 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -19.019 -5.133 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.461 4.461 8 H 0.090 0.910 9 N -0.210 5.210 10 C 0.189 3.811 11 O -0.495 6.495 12 C -0.083 4.083 13 N -0.216 5.216 14 C -0.091 4.091 15 C -0.142 4.142 16 C -0.189 4.189 17 C 0.144 3.856 18 O -0.356 6.356 19 C -0.088 4.088 20 C 0.335 3.665 21 O -0.412 6.412 22 O -0.316 6.316 23 C -0.136 4.136 24 C -0.165 4.165 25 C -0.151 4.151 26 C -0.131 4.131 27 H 0.087 0.913 28 H 0.229 0.771 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.244 0.756 38 H 0.285 0.715 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.697 -19.502 -5.500 21.675 hybrid contribution 0.255 3.045 0.851 3.172 sum 7.952 -16.456 -4.650 18.859 Atomic orbital electron populations 1.69677 1.06712 1.29182 1.50386 1.25989 0.96515 1.02243 0.96358 0.84932 0.77817 0.77421 0.78515 1.20309 1.19415 1.19359 1.19620 0.92396 0.84326 1.49730 0.90993 1.42112 1.09261 1.04915 1.64669 1.22240 0.88982 0.87206 0.82623 1.90501 1.15312 1.87426 1.56264 1.22137 0.95439 0.85425 1.05323 1.62501 1.17611 1.38720 1.02801 1.22291 0.96712 0.98272 0.91845 1.21519 0.97233 0.97457 0.98021 1.22323 0.98999 1.02413 0.95150 1.20201 0.88792 0.84562 0.92020 1.86236 1.53720 1.43619 1.52058 1.21515 0.95244 0.94145 0.97859 1.22862 0.79697 0.85622 0.78287 1.90863 1.70649 1.44140 1.35596 1.84436 1.42760 1.52421 1.51987 1.22881 1.00292 0.93756 0.96641 1.22929 0.97391 1.00039 0.96103 1.22890 0.99814 1.00931 0.91476 1.23239 0.96531 1.00764 0.92595 0.91279 0.77100 0.87636 0.86890 0.90274 0.95983 0.88991 0.90457 0.89870 0.92710 0.75621 0.71468 0.90633 0.87103 0.89027 0.89003 0.87535 0.92463 0.89979 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.49 13.05 21.67 0.28 -50.20 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 3 Si 0.99 44.24 29.55 68.60 2.03 46.26 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 8 H 0.07 4.56 7.16 -2.91 -0.02 4.54 16 9 N -0.57 -30.13 5.29 -306.97 -1.62 -31.75 16 10 C 0.40 19.52 7.20 87.66 0.63 20.15 16 11 O -0.61 -33.87 11.20 -3.06 -0.03 -33.91 16 12 C 0.05 1.74 5.86 85.56 0.50 2.24 16 13 N -0.49 -16.18 4.31 -900.92 -3.88 -20.07 16 14 C 0.04 1.21 5.09 86.33 0.44 1.65 16 15 C -0.10 -2.64 5.78 30.65 0.18 -2.46 16 16 C -0.15 -4.19 4.66 30.67 0.14 -4.04 16 17 C 0.19 5.13 0.35 -10.75 0.00 5.13 16 18 O -0.55 -12.62 11.03 -148.98 -1.64 -14.26 16 19 C -0.09 -2.18 0.46 -52.40 -0.02 -2.20 16 20 C 0.49 14.59 6.95 71.24 0.49 15.08 16 21 O -0.52 -20.77 12.82 21.98 0.28 -20.49 16 22 O -0.50 -10.85 11.52 -51.44 -0.59 -11.44 16 23 C -0.10 -1.85 6.73 31.21 0.21 -1.64 16 24 C -0.13 -2.18 7.64 31.21 0.24 -1.94 16 25 C -0.11 -2.56 6.56 31.12 0.20 -2.35 16 26 C 0.00 -0.11 3.61 86.32 0.31 0.20 16 27 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 29 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 30 H 0.11 3.51 8.06 -2.39 -0.02 3.49 16 31 H 0.08 2.33 8.06 -2.39 -0.02 2.31 16 32 H 0.02 0.96 6.00 -2.38 -0.01 0.94 16 33 H 0.09 1.80 6.91 -2.39 -0.02 1.79 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.08 1.92 7.98 -2.39 -0.02 1.90 16 36 H 0.05 1.93 5.78 -2.39 -0.01 1.92 16 37 H 0.39 7.92 6.93 -74.06 -0.51 7.40 16 38 H 0.42 6.21 9.10 -74.06 -0.67 5.54 16 39 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 40 H 0.11 1.95 7.27 -2.39 -0.02 1.93 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.57 6.86 -2.39 -0.02 1.56 16 43 H 0.11 2.35 7.44 -2.39 -0.02 2.34 16 44 H 0.06 1.40 8.09 -2.38 -0.02 1.38 16 45 H 0.08 3.73 3.00 -2.39 -0.01 3.72 16 46 H 0.05 1.94 7.75 -2.39 -0.02 1.93 16 Total: -1.00 -73.90 351.27 -1.45 -75.35 By element: Atomic # 1 Polarization: 50.26 SS G_CDS: -0.87 Total: 49.39 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 4.60 Total: 11.12 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -5.22 Total: -102.02 kcal Atomic # 8 Polarization: -78.12 SS G_CDS: -1.99 Total: -80.10 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -73.90 -1.45 -75.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.703 kcal (2) G-P(sol) polarization free energy of solvation -73.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds