Wall clock time and date at job start Fri Apr 10 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47199 * 2 1 4 4 C 1.50702 * 109.47014 * 239.99542 * 2 1 3 5 5 H 1.07996 * 119.99883 * 239.99580 * 4 2 1 6 6 C 1.37873 * 119.99717 * 60.00257 * 4 2 1 7 7 N 1.31513 * 120.00475 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99994 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46917 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47464 * 119.99969 * 8 6 4 11 11 H 1.48504 * 109.47269 * 239.99908 * 8 6 4 12 12 C 1.50698 * 109.47267 * 119.99757 * 2 1 3 13 13 O 1.21276 * 120.00300 * 105.10570 * 12 2 1 14 14 N 1.34776 * 119.99908 * 285.11223 * 12 2 1 15 15 C 1.47078 * 120.88171 * 5.67826 * 14 12 2 16 16 C 1.53239 * 108.51978 * 231.20630 * 15 14 12 17 17 N 1.46899 * 109.34245 * 306.17154 * 16 15 14 18 18 C 1.46898 * 110.99845 * 187.25472 * 17 16 15 19 19 C 1.50700 * 110.56357 * 177.71911 * 18 17 16 20 20 O 1.20829 * 120.00131 * 146.12687 * 19 18 17 21 21 O 1.34234 * 120.00091 * 326.13061 * 19 18 17 22 22 C 1.54804 * 110.60366 * 54.92850 * 18 17 16 23 23 C 1.54480 * 104.08620 * 241.36969 * 22 18 17 24 24 O 1.44423 * 104.80507 * 336.03417 * 23 22 18 25 25 C 1.44421 * 105.27866 * 40.51099 * 24 23 22 26 26 C 1.46897 * 111.27133 * 63.10421 * 17 16 15 27 27 C 1.47082 * 120.87986 * 185.69884 * 14 12 2 28 28 H 1.09003 * 109.47089 * 304.28171 * 1 2 3 29 29 H 1.09004 * 109.47218 * 64.27829 * 1 2 3 30 30 H 1.08995 * 109.47200 * 184.27763 * 1 2 3 31 31 H 0.97006 * 120.00431 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.63051 * 111.49953 * 15 14 12 33 33 H 1.08993 * 109.62905 * 350.92077 * 15 14 12 34 34 H 1.09005 * 109.49214 * 186.20754 * 16 15 14 35 35 H 1.08999 * 109.49105 * 66.13327 * 16 15 14 36 36 H 0.96704 * 116.99742 * 180.02562 * 21 19 18 37 37 H 1.08998 * 110.48989 * 122.72281 * 22 18 17 38 38 H 1.08995 * 110.50587 * 0.03127 * 22 18 17 39 39 H 1.09000 * 110.37266 * 217.19792 * 23 22 18 40 40 H 1.09006 * 110.37104 * 94.86371 * 23 22 18 41 41 H 1.08991 * 110.37409 * 78.31895 * 25 24 23 42 42 H 1.09002 * 110.37135 * 200.55311 * 25 24 23 43 43 H 1.08997 * 109.49231 * 56.85113 * 26 17 16 44 44 H 1.08997 * 109.49306 * 176.93521 * 26 17 16 45 45 H 1.08998 * 109.62935 * 248.49947 * 27 14 12 46 46 H 1.08995 * 109.63192 * 9.08877 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 3.1483 -2.2859 -3.6036 10 1 1.1677 -1.5868 -4.8165 11 1 3.1472 -0.1860 -4.8161 12 6 2.0323 -0.7103 1.2305 13 8 2.4925 -1.8287 1.1397 14 7 1.9701 -0.1028 2.4319 15 6 1.3045 1.1998 2.5856 16 6 2.2613 2.1527 3.3100 17 7 2.7092 1.5323 4.5639 18 6 3.4902 2.4797 5.3703 19 6 3.8974 1.8515 6.6782 20 8 4.9571 2.1389 7.1825 21 8 3.0828 0.9725 7.2830 22 6 2.6840 3.7776 5.6187 23 6 3.5379 4.8828 4.9585 24 8 4.8806 4.3512 4.9418 25 6 4.7342 2.9584 4.5893 26 6 3.4734 0.3042 4.3075 27 6 2.5663 -0.7246 3.6241 28 1 -0.3633 0.5789 0.8492 29 1 -0.3634 0.4460 -0.9259 30 1 -0.3633 -1.0247 0.0766 31 1 0.7087 1.1611 -3.4845 32 1 0.3941 1.0788 3.1727 33 1 1.0592 1.6037 1.6035 34 1 1.7458 3.0875 3.5305 35 1 3.1242 2.3538 2.6751 36 1 3.3869 0.5963 8.1203 37 1 2.5793 3.9632 6.6876 38 1 1.7051 3.7160 5.1432 39 1 3.4990 5.7970 5.5507 40 1 3.1925 5.0730 3.9422 41 1 4.5722 2.8534 3.5166 42 1 5.6151 2.3946 4.8964 43 1 4.3194 0.5310 3.6587 44 1 3.8370 -0.1016 5.2515 45 1 1.7772 -1.0305 4.3109 46 1 3.1553 -1.5928 3.3285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:28 Heat of formation + Delta-G solvation = -140.484879 kcal Electronic energy + Delta-G solvation = -29912.322314 eV Core-core repulsion = 25802.972698 eV Total energy + Delta-G solvation = -4109.349616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60220 -39.69378 -39.06053 -37.31421 -36.32000 -34.44131 -33.89194 -31.89358 -30.96857 -30.34075 -29.27938 -26.32664 -25.28275 -25.03609 -23.95809 -22.70380 -22.47356 -20.89441 -20.00185 -18.76514 -18.18050 -17.45265 -17.04288 -16.40545 -16.11414 -15.94093 -15.79371 -15.24616 -15.12553 -14.93259 -14.78453 -14.38326 -14.19692 -13.74694 -13.52040 -13.18248 -12.90761 -12.76683 -12.56010 -12.23463 -12.13771 -11.99258 -11.80091 -11.48595 -11.45794 -11.33044 -11.20562 -11.05256 -10.99158 -10.74465 -10.68134 -10.56249 -10.32644 -10.18452 -10.01008 -9.01712 -8.76415 -8.63867 -8.33564 -8.10389 -6.07310 -4.10497 1.80502 2.60270 3.10753 3.29706 3.37600 3.44657 3.57684 3.63147 3.81339 4.02854 4.16508 4.43564 4.58029 4.66509 4.74608 4.80295 4.93660 5.06088 5.19118 5.22717 5.26192 5.29214 5.33710 5.34667 5.41210 5.45481 5.56426 5.69042 5.77386 5.96251 6.08948 6.14847 6.17040 6.29069 6.55759 6.58576 6.66712 6.79950 6.90616 7.00709 7.38937 7.61738 7.72675 7.93246 8.06495 8.33634 8.97628 9.15350 9.55176 10.99934 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.003329 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.814673 B = 8408.059348 C = 8909.355871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.032 3.968 3 H 0.048 0.952 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.523 3.477 13 O -0.544 6.544 14 N -0.630 5.630 15 C 0.117 3.883 16 C 0.028 3.972 17 N -0.507 5.507 18 C 0.088 3.912 19 C 0.501 3.499 20 O -0.506 6.506 21 O -0.495 6.495 22 C -0.140 4.140 23 C 0.040 3.960 24 O -0.359 6.359 25 C 0.028 3.972 26 C 0.037 3.963 27 C 0.121 3.879 28 H 0.017 0.983 29 H 0.095 0.905 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.406 0.594 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 7.670 18.528 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.315 3.685 13 O -0.419 6.419 14 N -0.367 5.367 15 C -0.006 4.006 16 C -0.099 4.099 17 N -0.233 5.233 18 C -0.004 4.004 19 C 0.341 3.659 20 O -0.392 6.392 21 O -0.305 6.305 22 C -0.178 4.178 23 C -0.037 4.037 24 O -0.276 6.276 25 C -0.050 4.050 26 C -0.091 4.091 27 C -0.003 4.003 28 H 0.036 0.964 29 H 0.114 0.886 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.264 0.736 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.878 7.378 18.391 19.835 hybrid contribution 0.989 -0.482 -0.581 1.245 sum 1.867 6.896 17.810 19.189 Atomic orbital electron populations 1.21812 0.96258 0.99409 1.01864 1.18864 0.94300 0.96541 0.89221 0.93421 1.21164 1.30961 1.12647 0.89024 0.90977 1.24927 0.95087 0.95054 0.99072 1.69860 1.37085 1.23105 1.23479 0.86421 0.78680 0.79800 0.82508 1.19583 1.20975 1.21055 1.22063 0.76190 0.86211 0.84011 1.90527 1.45908 1.19828 1.85681 1.48429 1.58557 1.21415 1.08269 1.21835 0.94326 0.82850 1.01628 1.22818 0.99491 0.98481 0.89145 1.62192 1.38245 1.04180 1.18691 1.22355 0.94749 0.93650 0.89634 1.22745 0.81168 0.75902 0.86036 1.90772 1.23757 1.59480 1.65241 1.84677 1.50493 1.55262 1.40070 1.23141 1.00462 0.90961 1.03253 1.23556 0.82244 0.97094 1.00836 1.89208 1.25775 1.21918 1.90748 1.24065 0.97945 0.83849 0.99189 1.22634 0.95608 0.90593 1.00277 1.21435 0.96640 0.95226 0.86955 0.96429 0.88611 0.95082 0.92977 0.91108 0.87505 0.89005 0.93205 0.73551 0.89720 0.87388 0.88279 0.91251 0.90000 0.88052 0.93788 0.90078 0.91336 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.70 37.16 0.32 -2.70 16 2 C 0.03 0.76 1.78 -92.92 -0.17 0.60 16 3 H 0.05 1.16 7.11 -51.93 -0.37 0.79 16 4 C -0.50 -13.87 8.36 -34.44 -0.29 -14.16 16 5 H 0.07 2.13 6.85 -52.49 -0.36 1.78 16 6 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 7 N -0.90 -24.38 11.29 55.43 0.63 -23.76 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 11.65 6.93 -10.99 -0.08 11.58 16 13 O -0.54 -13.95 15.07 5.56 0.08 -13.87 16 14 N -0.63 -10.74 3.01 -172.46 -0.52 -11.26 16 15 C 0.12 1.60 5.54 -3.60 -0.02 1.58 16 16 C 0.03 0.31 4.89 -3.70 -0.02 0.30 16 17 N -0.51 -5.52 4.29 -218.01 -0.94 -6.46 16 18 C 0.09 0.91 0.70 -131.03 -0.09 0.82 16 19 C 0.50 5.44 5.69 36.01 0.20 5.65 16 20 O -0.51 -6.84 16.69 -18.75 -0.31 -7.15 16 21 O -0.49 -4.24 12.43 -39.27 -0.49 -4.73 16 22 C -0.14 -1.15 5.80 -25.00 -0.14 -1.30 16 23 C 0.04 0.33 7.63 37.93 0.29 0.62 16 24 O -0.36 -4.35 11.65 -35.23 -0.41 -4.76 16 25 C 0.03 0.32 5.29 37.93 0.20 0.52 16 26 C 0.04 0.45 5.02 -3.70 -0.02 0.43 16 27 C 0.12 1.76 6.58 -3.60 -0.02 1.73 16 28 H 0.02 0.32 6.18 -51.93 -0.32 0.00 16 29 H 0.10 2.36 5.97 -51.93 -0.31 2.05 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 1.59 4.79 -51.93 -0.25 1.35 16 34 H 0.09 0.79 5.86 -51.93 -0.30 0.48 16 35 H 0.05 0.60 6.27 -51.93 -0.33 0.28 16 36 H 0.41 1.72 9.10 45.56 0.41 2.13 16 37 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 38 H 0.11 0.76 6.16 -51.93 -0.32 0.44 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.92 5.75 -51.93 -0.30 0.62 16 42 H 0.10 1.23 7.38 -51.93 -0.38 0.85 16 43 H 0.04 0.57 7.48 -51.93 -0.39 0.18 16 44 H 0.08 0.89 6.35 -51.93 -0.33 0.56 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 1.49 7.10 -51.93 -0.37 1.13 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -33.76 352.61 -7.15 -40.91 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.56 Total: 2.15 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 0.08 Total: 7.18 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.83 Total: -41.47 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.13 Total: -30.51 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.76 -7.15 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.579 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds