Wall clock time and date at job start Fri Apr 10 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47199 * 2 1 4 4 C 1.50702 * 109.47014 * 239.99542 * 2 1 3 5 5 H 1.07996 * 119.99883 * 239.99580 * 4 2 1 6 6 C 1.37873 * 119.99717 * 60.00257 * 4 2 1 7 7 N 1.31513 * 120.00475 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99994 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46917 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47464 * 119.99969 * 8 6 4 11 11 H 1.48504 * 109.47269 * 239.99908 * 8 6 4 12 12 C 1.50698 * 109.47267 * 119.99757 * 2 1 3 13 13 O 1.21276 * 120.00300 * 105.10570 * 12 2 1 14 14 N 1.34776 * 119.99908 * 285.11223 * 12 2 1 15 15 C 1.47078 * 120.88171 * 5.67826 * 14 12 2 16 16 C 1.53239 * 108.51978 * 231.20630 * 15 14 12 17 17 N 1.46899 * 109.34245 * 306.17154 * 16 15 14 18 18 C 1.46898 * 110.99845 * 187.25472 * 17 16 15 19 19 C 1.50700 * 110.56357 * 177.71911 * 18 17 16 20 20 O 1.20829 * 120.00131 * 146.12687 * 19 18 17 21 21 O 1.34234 * 120.00091 * 326.13061 * 19 18 17 22 22 C 1.54804 * 110.60366 * 54.92850 * 18 17 16 23 23 C 1.54480 * 104.08620 * 241.36969 * 22 18 17 24 24 O 1.44423 * 104.80507 * 336.03417 * 23 22 18 25 25 C 1.44421 * 105.27866 * 40.51099 * 24 23 22 26 26 C 1.46897 * 111.27133 * 63.10421 * 17 16 15 27 27 C 1.47082 * 120.87986 * 185.69884 * 14 12 2 28 28 H 1.09003 * 109.47089 * 304.28171 * 1 2 3 29 29 H 1.09004 * 109.47218 * 64.27829 * 1 2 3 30 30 H 1.08995 * 109.47200 * 184.27763 * 1 2 3 31 31 H 0.97006 * 120.00431 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.63051 * 111.49953 * 15 14 12 33 33 H 1.08993 * 109.62905 * 350.92077 * 15 14 12 34 34 H 1.09005 * 109.49214 * 186.20754 * 16 15 14 35 35 H 1.08999 * 109.49105 * 66.13327 * 16 15 14 36 36 H 0.96704 * 116.99742 * 180.02562 * 21 19 18 37 37 H 1.08998 * 110.48989 * 122.72281 * 22 18 17 38 38 H 1.08995 * 110.50587 * 0.03127 * 22 18 17 39 39 H 1.09000 * 110.37266 * 217.19792 * 23 22 18 40 40 H 1.09006 * 110.37104 * 94.86371 * 23 22 18 41 41 H 1.08991 * 110.37409 * 78.31895 * 25 24 23 42 42 H 1.09002 * 110.37135 * 200.55311 * 25 24 23 43 43 H 1.08997 * 109.49231 * 56.85113 * 26 17 16 44 44 H 1.08997 * 109.49306 * 176.93521 * 26 17 16 45 45 H 1.08998 * 109.62935 * 248.49947 * 27 14 12 46 46 H 1.08995 * 109.63192 * 9.08877 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 3.1483 -2.2859 -3.6036 10 1 1.1677 -1.5868 -4.8165 11 1 3.1472 -0.1860 -4.8161 12 6 2.0323 -0.7103 1.2305 13 8 2.4925 -1.8287 1.1397 14 7 1.9701 -0.1028 2.4319 15 6 1.3045 1.1998 2.5856 16 6 2.2613 2.1527 3.3100 17 7 2.7092 1.5323 4.5639 18 6 3.4902 2.4797 5.3703 19 6 3.8974 1.8515 6.6782 20 8 4.9571 2.1389 7.1825 21 8 3.0828 0.9725 7.2830 22 6 2.6840 3.7776 5.6187 23 6 3.5379 4.8828 4.9585 24 8 4.8806 4.3512 4.9418 25 6 4.7342 2.9584 4.5893 26 6 3.4734 0.3042 4.3075 27 6 2.5663 -0.7246 3.6241 28 1 -0.3633 0.5789 0.8492 29 1 -0.3634 0.4460 -0.9259 30 1 -0.3633 -1.0247 0.0766 31 1 0.7087 1.1611 -3.4845 32 1 0.3941 1.0788 3.1727 33 1 1.0592 1.6037 1.6035 34 1 1.7458 3.0875 3.5305 35 1 3.1242 2.3538 2.6751 36 1 3.3869 0.5963 8.1203 37 1 2.5793 3.9632 6.6876 38 1 1.7051 3.7160 5.1432 39 1 3.4990 5.7970 5.5507 40 1 3.1925 5.0730 3.9422 41 1 4.5722 2.8534 3.5166 42 1 5.6151 2.3946 4.8964 43 1 4.3194 0.5310 3.6587 44 1 3.8370 -0.1016 5.2515 45 1 1.7772 -1.0305 4.3109 46 1 3.1553 -1.5928 3.3285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:28 Heat of formation + Delta-G solvation = -166.694173 kcal Electronic energy + Delta-G solvation = -29913.458834 eV Core-core repulsion = 25802.972698 eV Total energy + Delta-G solvation = -4110.486136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.46034 -40.98371 -40.08061 -38.51981 -37.12093 -35.90042 -35.63902 -33.16682 -32.05686 -31.82831 -30.22898 -27.46226 -27.24869 -26.01759 -25.08573 -24.09948 -23.32052 -22.11294 -21.01456 -19.91679 -19.23805 -18.46950 -18.18568 -18.01895 -17.32940 -16.94658 -16.83904 -16.75394 -16.33672 -16.06987 -15.96334 -15.72917 -15.23695 -14.82379 -14.73013 -14.54113 -14.28832 -13.99113 -13.67682 -13.59676 -13.15146 -12.98856 -12.96147 -12.76391 -12.69236 -12.62387 -12.53959 -12.38202 -12.27480 -12.19511 -12.09941 -12.03547 -11.98736 -11.57074 -11.03076 -10.96595 -10.59119 -10.23703 -9.81634 -9.37391 -8.14799 -6.24514 0.97908 1.38802 1.41732 1.54042 1.87353 1.89968 2.07461 2.35408 2.47251 3.00682 3.14678 3.26972 3.35524 3.66682 3.87986 3.96021 3.97386 4.03492 4.11660 4.19195 4.29112 4.31552 4.43675 4.47585 4.51868 4.63584 4.73310 4.75890 4.76765 4.80458 4.84980 4.95386 4.98930 5.03729 5.08271 5.40913 5.45866 5.52467 5.62037 5.72392 5.74420 5.77310 5.98040 6.22596 6.59151 6.82701 6.93360 7.39958 7.49790 8.90586 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.003329 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.814673 B = 8408.059348 C = 8909.355871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.031 3.969 3 H 0.045 0.955 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.950 3.050 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.590 6.590 14 N -0.621 5.621 15 C 0.111 3.889 16 C 0.033 3.967 17 N -0.498 5.498 18 C 0.088 3.912 19 C 0.506 3.494 20 O -0.537 6.537 21 O -0.490 6.490 22 C -0.134 4.134 23 C 0.033 3.967 24 O -0.385 6.385 25 C 0.029 3.971 26 C 0.045 3.955 27 C 0.121 3.879 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.039 0.961 36 H 0.426 0.574 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.031 0.969 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 9.170 19.889 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.010 3.990 3 H 0.062 0.938 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.776 3.224 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.313 3.687 13 O -0.470 6.470 14 N -0.355 5.355 15 C -0.011 4.011 16 C -0.095 4.095 17 N -0.224 5.224 18 C -0.004 4.004 19 C 0.348 3.652 20 O -0.427 6.427 21 O -0.302 6.302 22 C -0.172 4.172 23 C -0.043 4.043 24 O -0.303 6.303 25 C -0.050 4.050 26 C -0.083 4.083 27 C -0.001 4.001 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.057 0.943 36 H 0.287 0.713 37 H 0.110 0.890 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.424 8.919 19.804 21.724 hybrid contribution 1.370 -0.917 -0.920 1.888 sum 0.946 8.002 18.884 20.531 Atomic orbital electron populations 1.21627 0.94992 0.98921 1.02428 1.18760 0.95275 0.95879 0.89121 0.93765 1.21290 1.31631 1.12490 0.91325 0.93954 1.25496 0.95189 0.95720 1.01093 1.69918 1.36994 1.23380 1.24244 0.85631 0.78390 0.78627 0.79756 1.20765 1.19963 1.19877 1.21696 0.76124 0.85656 0.85267 1.90499 1.48199 1.21684 1.86624 1.48347 1.57527 1.22275 1.07373 1.22079 0.95698 0.81429 1.01917 1.22812 0.98839 0.99026 0.88786 1.62192 1.37847 1.03847 1.18475 1.22382 0.94532 0.94333 0.89124 1.22764 0.80695 0.75716 0.86040 1.90770 1.25094 1.60668 1.66148 1.84626 1.49878 1.54457 1.41257 1.23192 1.00749 0.89213 1.04010 1.23819 0.80677 0.97708 1.02081 1.89183 1.28138 1.22093 1.90880 1.23990 0.97965 0.83883 0.99159 1.22500 0.94647 0.90782 1.00382 1.21552 0.97235 0.95272 0.86079 0.92423 0.90795 0.96495 0.92538 0.88693 0.88648 0.85479 0.94320 0.71261 0.88987 0.85467 0.86558 0.89972 0.90220 0.89614 0.95051 0.88599 0.89503 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.70 71.98 0.63 -4.77 16 2 C 0.03 1.49 1.78 -12.29 -0.02 1.47 16 3 H 0.04 2.17 7.11 -2.39 -0.02 2.15 16 4 C -0.53 -30.23 8.36 25.60 0.21 -30.01 16 5 H 0.04 2.63 6.85 -2.91 -0.02 2.61 16 6 C 0.02 1.34 5.29 84.65 0.45 1.79 16 7 N -0.91 -49.20 11.29 21.45 0.24 -48.96 16 8 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 9 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 C 0.52 23.60 6.93 87.66 0.61 24.20 16 13 O -0.59 -31.46 15.07 -3.02 -0.05 -31.50 16 14 N -0.62 -20.63 3.01 -817.94 -2.46 -23.09 16 15 C 0.11 2.75 5.54 86.35 0.48 3.23 16 16 C 0.03 0.63 4.89 86.38 0.42 1.05 16 17 N -0.50 -9.48 4.29 -843.65 -3.62 -13.10 16 18 C 0.09 1.61 0.70 3.90 0.00 1.61 16 19 C 0.51 9.94 5.69 71.24 0.41 10.34 16 20 O -0.54 -13.93 16.69 21.96 0.37 -13.56 16 21 O -0.49 -6.96 12.43 -51.46 -0.64 -7.60 16 22 C -0.13 -1.73 5.80 31.71 0.18 -1.54 16 23 C 0.03 0.47 7.63 72.49 0.55 1.02 16 24 O -0.38 -8.82 11.65 -148.98 -1.74 -10.56 16 25 C 0.03 0.63 5.29 72.49 0.38 1.01 16 26 C 0.05 1.03 5.02 86.39 0.43 1.47 16 27 C 0.12 3.41 6.58 86.35 0.57 3.97 16 28 H 0.06 2.03 6.18 -2.39 -0.01 2.01 16 29 H 0.07 3.62 5.97 -2.38 -0.01 3.61 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.10 2.64 4.79 -2.39 -0.01 2.63 16 34 H 0.13 1.60 5.86 -2.38 -0.01 1.58 16 35 H 0.04 0.87 6.27 -2.39 -0.01 0.85 16 36 H 0.43 2.41 9.10 -74.05 -0.67 1.74 16 37 H 0.09 1.10 7.73 -2.39 -0.02 1.08 16 38 H 0.13 1.15 6.16 -2.39 -0.01 1.14 16 39 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 1.74 5.75 -2.39 -0.01 1.73 16 42 H 0.09 2.10 7.38 -2.39 -0.02 2.08 16 43 H 0.03 0.80 7.48 -2.39 -0.02 0.79 16 44 H 0.10 1.93 6.35 -2.39 -0.02 1.91 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 2.35 7.10 -2.39 -0.02 2.34 16 Total: -1.00 -74.94 352.61 -0.21 -75.14 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.36 Total: 12.01 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.30 Total: 14.85 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -5.84 Total: -85.16 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -2.05 Total: -63.22 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.94 -0.21 -75.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.550 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds