Wall clock time and date at job start Fri Apr 10 2020 18:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47084 * 269.99634 * 3 2 1 5 5 H 1.48500 * 109.47414 * 29.99834 * 3 2 1 6 6 H 1.48500 * 109.47230 * 149.99739 * 3 2 1 7 7 C 1.38956 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00125 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00049 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00267 * 359.97438 * 10 9 7 12 12 C 1.50709 * 120.00123 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47020 * 179.97438 * 12 10 9 14 14 C 1.46851 * 111.00126 * 75.56243 * 13 12 10 15 15 C 1.53039 * 109.52524 * 185.83813 * 14 13 12 16 16 C 1.53122 * 109.27499 * 300.81876 * 15 14 13 17 17 H 1.08993 * 109.52215 * 297.68580 * 16 15 14 18 18 C 1.50704 * 109.51745 * 177.55776 * 16 15 14 19 19 O 1.20825 * 119.99981 * 239.99365 * 18 16 15 20 20 O 1.34228 * 119.99884 * 60.00189 * 18 16 15 21 21 C 1.53117 * 109.16250 * 57.65495 * 16 15 14 22 22 C 1.46847 * 111.00076 * 199.76940 * 13 12 10 23 23 H 1.09004 * 109.46021 * 294.17733 * 22 13 12 24 24 C 1.52998 * 109.46296 * 54.15363 * 22 13 12 25 25 H 1.08997 * 109.87206 * 293.23188 * 24 22 13 26 26 C 1.54101 * 109.87689 * 54.23565 * 24 22 13 27 27 C 1.54810 * 104.18694 * 121.45351 * 26 24 22 28 28 C 1.54988 * 102.09254 * 20.88161 * 27 26 24 29 29 O 1.43746 * 109.88139 * 172.06585 * 24 22 13 30 30 H 0.96994 * 120.00109 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00114 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46966 * 59.99645 * 12 10 9 33 33 H 1.08999 * 109.46778 * 300.00082 * 12 10 9 34 34 H 1.08998 * 109.46588 * 65.81745 * 14 13 12 35 35 H 1.09005 * 109.45747 * 305.85251 * 14 13 12 36 36 H 1.08996 * 109.50140 * 180.87742 * 15 14 13 37 37 H 1.08997 * 109.53439 * 60.77880 * 15 14 13 38 38 H 0.96705 * 116.99613 * 179.97438 * 20 18 16 39 39 H 1.09002 * 109.50159 * 62.28321 * 21 16 15 40 40 H 1.08996 * 109.50322 * 182.40158 * 21 16 15 41 41 H 1.09000 * 110.48557 * 240.13101 * 26 24 22 42 42 H 1.08996 * 110.48802 * 2.77629 * 26 24 22 43 43 H 1.09003 * 110.90321 * 139.08080 * 27 26 24 44 44 H 1.09001 * 110.90842 * 262.68023 * 27 26 24 45 45 H 1.09006 * 110.61857 * 81.47969 * 28 27 26 46 46 H 1.09002 * 110.61783 * 204.31535 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 2.7991 -6.1574 1.3299 15 6 3.8898 -7.2285 1.2586 16 6 3.2747 -8.5449 0.7756 17 1 2.5268 -8.8824 1.4931 18 6 4.3549 -9.5878 0.6459 19 8 4.5707 -10.1042 -0.4249 20 8 5.0772 -9.9430 1.7201 21 6 2.6137 -8.3207 -0.5873 22 6 1.5601 -7.2179 -0.4625 23 1 0.7973 -7.5238 0.2536 24 6 0.9110 -6.9765 -1.8267 25 1 0.0785 -6.2807 -1.7230 26 6 1.9523 -6.4051 -2.8086 27 6 1.9773 -7.4263 -3.9718 28 6 0.6121 -8.1410 -3.8059 29 8 0.4459 -8.2217 -2.3740 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.6181 -4.9209 -0.8897 33 1 0.6160 -4.9205 0.8903 34 1 2.0306 -6.4682 2.0375 35 1 3.2365 -5.2150 1.6597 36 1 4.3248 -7.3713 2.2477 37 1 4.6661 -6.9123 0.5618 38 1 5.7587 -10.6163 1.5878 39 1 3.3695 -8.0213 -1.3134 40 1 2.1371 -9.2439 -0.9168 41 1 1.6397 -5.4248 -3.1682 42 1 2.9313 -6.3440 -2.3335 43 1 2.0358 -6.9181 -4.9343 44 1 2.8015 -8.1299 -3.8542 45 1 -0.1875 -7.5498 -4.2524 46 1 0.6440 -9.1370 -4.2477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:57 Heat of formation + Delta-G solvation = -167.891042 kcal Electronic energy + Delta-G solvation = -29476.035194 eV Core-core repulsion = 25365.497158 eV Total energy + Delta-G solvation = -4110.538036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85297 -39.90167 -38.46833 -37.40584 -36.23910 -34.07075 -33.54309 -32.08548 -31.54668 -31.20154 -28.23896 -27.64438 -25.26496 -23.93138 -23.68294 -21.91365 -21.73537 -20.64683 -19.37471 -19.06247 -18.10971 -17.85154 -16.96803 -16.43120 -16.09660 -16.00909 -15.61505 -15.31427 -15.02681 -14.60513 -14.49072 -14.01760 -13.82771 -13.61008 -13.44627 -13.39476 -13.09043 -12.93432 -12.31324 -12.06627 -11.88046 -11.65783 -11.60693 -11.55296 -11.45424 -11.31285 -11.10508 -11.03884 -10.84695 -10.69980 -10.63203 -10.39665 -10.32013 -10.30568 -10.20806 -9.54380 -9.46655 -8.49146 -7.96187 -7.88096 -6.41137 -3.81776 2.10097 2.91011 3.17762 3.26491 3.31810 3.56662 3.91465 4.10049 4.28026 4.47465 4.70676 4.73186 4.78157 4.90859 4.96390 5.03018 5.13886 5.19787 5.25510 5.28710 5.36699 5.43162 5.49138 5.60283 5.67305 5.69267 5.75436 5.78887 5.87898 5.90762 5.97112 6.01499 6.16299 6.19569 6.22252 6.28698 6.30881 6.39550 6.49694 6.89204 7.22475 7.32858 7.55653 7.77459 8.07204 8.62942 9.19300 9.55907 10.07924 10.76709 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.003543 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.476063 B = 7902.115615 C = 9279.122949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.574 6.574 12 C 0.037 3.963 13 N -0.505 5.505 14 C 0.064 3.936 15 C -0.104 4.104 16 C -0.082 4.082 17 H 0.104 0.896 18 C 0.485 3.515 19 O -0.515 6.515 20 O -0.517 6.517 21 C -0.088 4.088 22 C 0.089 3.911 23 H 0.046 0.954 24 C 0.081 3.919 25 H 0.071 0.929 26 C -0.143 4.143 27 C -0.157 4.157 28 C 0.048 3.952 29 O -0.374 6.374 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.030 0.970 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.407 0.593 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -17.916 -0.767 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.458 6.458 12 C -0.094 4.094 13 N -0.231 5.231 14 C -0.064 4.064 15 C -0.142 4.142 16 C -0.101 4.101 17 H 0.122 0.878 18 C 0.328 3.672 19 O -0.402 6.402 20 O -0.328 6.328 21 C -0.125 4.125 22 C -0.020 4.020 23 H 0.064 0.936 24 C 0.023 3.977 25 H 0.089 0.911 26 C -0.181 4.181 27 C -0.194 4.194 28 C -0.029 4.029 29 O -0.293 6.293 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.265 0.735 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.128 -17.656 -1.207 17.825 hybrid contribution -0.451 0.429 0.317 0.698 sum 1.677 -17.227 -0.890 17.332 Atomic orbital electron populations 1.69607 1.05919 1.28092 1.50817 1.25238 0.95601 0.99648 0.97447 0.85884 0.79237 0.80953 0.78371 1.20455 1.20988 1.19448 1.19678 0.93313 0.82213 1.47473 0.87953 1.41869 1.09138 1.04593 1.64795 1.19715 0.88426 0.84378 0.84362 1.90514 1.13564 1.86926 1.54754 1.22005 0.94033 0.91461 1.01886 1.61456 1.32406 1.02380 1.26812 1.22105 0.95722 1.00193 0.88374 1.21584 0.98947 0.91474 1.02172 1.21215 0.94401 0.93299 1.01198 0.87768 1.23594 0.81229 0.81358 0.81044 1.90711 1.67097 1.53489 1.28946 1.84562 1.49084 1.58604 1.40592 1.21450 0.98050 0.98535 0.94492 1.21585 0.94825 0.90371 0.95197 0.93582 1.22775 0.95761 0.85696 0.93421 0.91085 1.22921 1.01733 0.98582 0.94844 1.23165 0.98067 0.98792 0.99420 1.23513 0.96225 1.00962 0.82161 1.88809 1.84859 1.36129 1.19467 0.91926 0.77601 0.89158 0.93063 0.95185 0.88256 0.90320 0.90138 0.73507 0.89902 0.90016 0.90759 0.88301 0.90523 0.90613 0.92374 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.57 -13.89 5.29 -10.96 -0.06 -13.95 16 10 C 0.45 10.00 7.49 -10.98 -0.08 9.92 16 11 O -0.57 -14.73 14.74 5.55 0.08 -14.64 16 12 C 0.04 0.63 5.20 -4.97 -0.03 0.60 16 13 N -0.50 -7.71 3.16 -228.12 -0.72 -8.43 16 14 C 0.06 0.91 5.11 -3.83 -0.02 0.89 16 15 C -0.10 -1.27 5.31 -26.65 -0.14 -1.41 16 16 C -0.08 -0.93 2.70 -91.65 -0.25 -1.17 16 17 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 18 C 0.49 5.65 7.63 36.01 0.27 5.93 16 19 O -0.51 -7.44 16.74 -18.75 -0.31 -7.76 16 20 O -0.52 -4.63 13.35 -39.25 -0.52 -5.16 16 21 C -0.09 -1.11 3.53 -26.65 -0.09 -1.20 16 22 C 0.09 1.17 1.87 -67.73 -0.13 1.04 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 C 0.08 1.07 2.67 -26.16 -0.07 1.00 16 25 H 0.07 0.94 6.35 -51.93 -0.33 0.61 16 26 C -0.14 -1.92 5.59 -25.20 -0.14 -2.06 16 27 C -0.16 -1.73 7.15 -24.73 -0.18 -1.91 16 28 C 0.05 0.51 7.72 38.21 0.29 0.81 16 29 O -0.37 -4.89 10.23 -35.23 -0.36 -5.25 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 32 H 0.09 1.40 5.33 -51.93 -0.28 1.12 16 33 H 0.05 0.79 8.00 -51.93 -0.42 0.38 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 1.71 6.69 -51.93 -0.35 1.37 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.41 1.92 9.10 45.56 0.41 2.34 16 39 H 0.08 1.18 6.68 -51.93 -0.35 0.83 16 40 H 0.08 1.06 7.54 -51.93 -0.39 0.67 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.10 1.51 6.22 -51.93 -0.32 1.19 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -32.18 365.28 -7.56 -39.74 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.08 Total: 12.99 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.80 Total: 4.68 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.06 Total: -45.89 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.12 Total: -32.81 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.18 -7.56 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.147 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds