Wall clock time and date at job start Fri Apr 10 2020 18:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47011 * 239.99707 * 3 2 1 5 5 H 1.48498 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47201 * 119.99820 * 3 2 1 7 7 C 1.38950 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00128 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99493 * 180.27640 * 9 7 2 11 11 O 1.21291 * 120.00310 * 359.72019 * 10 9 7 12 12 C 1.50707 * 119.99730 * 179.72382 * 10 9 7 13 13 N 1.46899 * 109.46767 * 179.97438 * 12 10 9 14 14 C 1.46847 * 111.00029 * 71.96235 * 13 12 10 15 15 C 1.53037 * 109.52571 * 185.83591 * 14 13 12 16 16 C 1.53120 * 109.27528 * 300.81876 * 15 14 13 17 17 H 1.08999 * 109.51839 * 297.74174 * 16 15 14 18 18 C 1.50704 * 109.52046 * 177.55809 * 16 15 14 19 19 O 1.20823 * 119.99865 * 239.99911 * 18 16 15 20 20 O 1.34228 * 120.00260 * 59.99825 * 18 16 15 21 21 C 1.53120 * 109.16427 * 57.65433 * 16 15 14 22 22 C 1.46851 * 110.99777 * 196.16459 * 13 12 10 23 23 H 1.09006 * 109.46177 * 294.17916 * 22 13 12 24 24 C 1.53001 * 109.46243 * 54.14664 * 22 13 12 25 25 H 1.09006 * 110.33257 * 303.88959 * 24 22 13 26 26 C 1.54476 * 110.37297 * 181.63911 * 24 22 13 27 27 C 1.54511 * 104.06022 * 217.19337 * 26 24 22 28 28 C 1.54478 * 104.06674 * 359.97438 * 27 26 24 29 29 O 1.44427 * 110.37018 * 66.25463 * 24 22 13 30 30 H 0.97003 * 119.99970 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00315 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47055 * 299.99710 * 12 10 9 33 33 H 1.09006 * 109.47086 * 59.99978 * 12 10 9 34 34 H 1.09007 * 109.45815 * 305.85138 * 14 13 12 35 35 H 1.08999 * 109.46838 * 65.81314 * 14 13 12 36 36 H 1.09005 * 109.50349 * 60.75681 * 15 14 13 37 37 H 1.08995 * 109.50537 * 180.83578 * 15 14 13 38 38 H 0.96695 * 117.00359 * 180.02562 * 20 18 16 39 39 H 1.08998 * 109.50357 * 62.28134 * 21 16 15 40 40 H 1.08995 * 109.50458 * 182.40293 * 21 16 15 41 41 H 1.09000 * 110.50857 * 335.82871 * 26 24 22 42 42 H 1.08996 * 110.51356 * 98.54741 * 26 24 22 43 43 H 1.08998 * 110.51308 * 118.64545 * 27 26 24 44 44 H 1.09001 * 110.51152 * 241.35459 * 27 26 24 45 45 H 1.08993 * 110.37829 * 142.81142 * 28 27 26 46 46 H 1.09008 * 110.37336 * 265.04225 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0067 11 8 3.2103 -3.5578 0.0071 12 6 1.2439 -4.8629 0.0130 13 7 2.1985 -5.9794 0.0184 14 6 2.8632 -6.0972 1.3225 15 6 3.9502 -7.1718 1.2474 16 6 3.3137 -8.5081 0.8554 17 1 2.6010 -8.8110 1.6226 18 6 4.3873 -9.5571 0.7213 19 8 4.5514 -10.1221 -0.3340 20 8 5.1613 -9.8639 1.7742 21 6 2.5872 -8.3456 -0.4826 22 6 1.5397 -7.2369 -0.3573 23 1 0.8128 -7.5089 0.4082 24 6 0.8247 -7.0572 -1.6979 25 1 0.1225 -6.2252 -1.6442 26 6 0.0894 -8.3568 -2.0937 27 6 0.2682 -8.4373 -3.6264 28 6 1.0898 -7.1766 -3.9753 29 8 1.7850 -6.8400 -2.7546 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6169 -4.9162 0.9030 33 1 0.6175 -4.9251 -0.8770 34 1 3.3151 -5.1413 1.5874 35 1 2.1301 -6.3744 2.0801 36 1 4.6910 -6.8884 0.4997 37 1 4.4333 -7.2694 2.2195 38 1 5.8366 -10.5428 1.6397 39 1 3.3065 -8.0806 -1.2574 40 1 2.0960 -9.2822 -0.7462 41 1 0.5494 -9.2183 -1.6098 42 1 -0.9675 -8.2914 -1.8354 43 1 0.8164 -9.3388 -3.9001 44 1 -0.7004 -8.4118 -4.1257 45 1 1.8032 -7.3963 -4.7695 46 1 0.4284 -6.3634 -4.2746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:09 Heat of formation + Delta-G solvation = -164.839710 kcal Electronic energy + Delta-G solvation = -29335.890636 eV Core-core repulsion = 25225.484915 eV Total energy + Delta-G solvation = -4110.405720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.79986 -39.83208 -38.43192 -37.35287 -36.22792 -34.01746 -33.42876 -32.32165 -31.53012 -31.14865 -28.27656 -27.54171 -25.20956 -24.11367 -23.66638 -22.09757 -21.26126 -20.62213 -19.57602 -19.08743 -18.10920 -17.80480 -16.99799 -16.51158 -16.02487 -15.78695 -15.49244 -15.27013 -15.02877 -14.82614 -14.45032 -14.00026 -13.78301 -13.65567 -13.50951 -13.29714 -13.10043 -12.94471 -12.35011 -12.01768 -11.78221 -11.73009 -11.61845 -11.53303 -11.42306 -11.29198 -11.23467 -11.02520 -10.91899 -10.75212 -10.56962 -10.40876 -10.33300 -10.21437 -10.14818 -9.51597 -9.40672 -8.38848 -7.90481 -7.78159 -6.36282 -3.76539 2.10713 2.91749 3.23802 3.28810 3.33452 3.77826 3.97411 4.07305 4.25065 4.41377 4.61108 4.69401 4.75977 4.85338 4.87523 4.98862 5.12848 5.20339 5.27067 5.30424 5.32048 5.39106 5.51976 5.54259 5.57982 5.64723 5.67459 5.74750 5.78928 5.87647 5.89221 5.95198 6.02995 6.07362 6.26758 6.32142 6.33535 6.38093 6.49319 6.95639 7.31736 7.43467 7.60290 7.78253 8.12522 8.68800 9.24509 9.61384 10.14154 10.81703 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.003561 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.959123 B = 7860.277761 C = 9412.820761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.296 4.296 8 H 0.102 0.898 9 N -0.568 5.568 10 C 0.448 3.552 11 O -0.573 6.573 12 C 0.040 3.960 13 N -0.502 5.502 14 C 0.060 3.940 15 C -0.103 4.103 16 C -0.081 4.081 17 H 0.103 0.897 18 C 0.485 3.515 19 O -0.515 6.515 20 O -0.517 6.517 21 C -0.091 4.091 22 C 0.094 3.906 23 H 0.051 0.949 24 C 0.077 3.923 25 H 0.076 0.924 26 C -0.155 4.155 27 C -0.153 4.153 28 C 0.039 3.961 29 O -0.342 6.342 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.027 0.973 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.407 0.593 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -19.960 0.226 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.234 3.766 11 O -0.456 6.456 12 C -0.091 4.091 13 N -0.226 5.226 14 C -0.067 4.067 15 C -0.141 4.141 16 C -0.101 4.101 17 H 0.121 0.879 18 C 0.328 3.672 19 O -0.402 6.402 20 O -0.328 6.328 21 C -0.129 4.129 22 C -0.015 4.015 23 H 0.068 0.932 24 C 0.019 3.981 25 H 0.093 0.907 26 C -0.193 4.193 27 C -0.191 4.191 28 C -0.038 4.038 29 O -0.261 6.261 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.265 0.735 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.294 -19.462 -0.332 19.467 hybrid contribution -0.719 0.138 0.407 0.838 sum -1.013 -19.324 0.076 19.350 Atomic orbital electron populations 1.69606 1.05899 1.28098 1.51053 1.25225 0.95603 0.99596 0.97536 0.85943 0.78758 0.80621 0.79042 1.19939 1.21064 1.19976 1.19638 0.93301 0.82255 1.47357 0.88028 1.41849 1.09076 1.04561 1.65034 1.19708 0.88425 0.84400 0.84104 1.90508 1.13638 1.86893 1.54568 1.21981 0.94127 0.91495 1.01515 1.61412 1.29719 1.01513 1.29971 1.22151 0.95413 1.00640 0.88514 1.21574 0.98875 0.91098 1.02570 1.21207 0.94287 0.93367 1.01204 0.87901 1.23591 0.81127 0.81751 0.80758 1.90712 1.68746 1.51598 1.29188 1.84559 1.47462 1.58663 1.42143 1.21493 0.98358 0.97437 0.95580 1.21633 0.94625 0.90759 0.94468 0.93159 1.23139 0.90409 0.96080 0.88440 0.90681 1.23087 1.01102 0.98899 0.96197 1.22917 1.00835 0.99542 0.95813 1.23408 0.95899 0.95266 0.89226 1.89346 1.34187 1.88345 1.14173 0.91948 0.77639 0.93480 0.89015 0.87977 0.95529 0.90045 0.90395 0.73509 0.88747 0.90884 0.90198 0.90621 0.90805 0.90833 0.89318 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 10 C 0.45 10.61 7.47 -10.98 -0.08 10.52 16 11 O -0.57 -15.51 14.43 5.55 0.08 -15.43 16 12 C 0.04 0.71 5.28 -4.97 -0.03 0.68 16 13 N -0.50 -8.29 4.10 -228.11 -0.94 -9.22 16 14 C 0.06 0.92 5.11 -3.83 -0.02 0.90 16 15 C -0.10 -1.35 5.31 -26.65 -0.14 -1.49 16 16 C -0.08 -0.93 2.70 -91.65 -0.25 -1.18 16 17 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 18 C 0.49 5.71 7.63 36.01 0.27 5.99 16 19 O -0.51 -7.52 16.74 -18.75 -0.31 -7.83 16 20 O -0.52 -4.69 13.35 -39.25 -0.52 -5.22 16 21 C -0.09 -1.15 3.53 -26.65 -0.09 -1.24 16 22 C 0.09 1.22 1.78 -67.72 -0.12 1.10 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 C 0.08 0.99 2.65 -25.96 -0.07 0.92 16 25 H 0.08 0.98 5.84 -51.93 -0.30 0.68 16 26 C -0.15 -1.49 6.46 -25.16 -0.16 -1.65 16 27 C -0.15 -1.42 7.09 -25.16 -0.18 -1.60 16 28 C 0.04 0.46 7.63 37.93 0.29 0.75 16 29 O -0.34 -5.28 10.45 -35.23 -0.37 -5.65 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 32 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.09 1.53 5.32 -51.93 -0.28 1.25 16 34 H 0.10 1.90 6.36 -51.92 -0.33 1.57 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.41 1.97 9.10 45.56 0.41 2.38 16 39 H 0.09 1.48 7.45 -51.93 -0.39 1.10 16 40 H 0.07 0.83 6.22 -51.93 -0.32 0.50 16 41 H 0.08 0.73 5.90 -51.93 -0.31 0.43 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -34.34 365.13 -7.72 -42.07 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.99 Total: 12.26 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.82 Total: 5.76 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.27 Total: -47.67 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.13 Total: -34.13 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.34 -7.72 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.775 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds