Wall clock time and date at job start Fri Apr 10 2020 18:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47011 * 239.99707 * 3 2 1 5 5 H 1.48498 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47201 * 119.99820 * 3 2 1 7 7 C 1.38950 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00128 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99493 * 180.27640 * 9 7 2 11 11 O 1.21291 * 120.00310 * 359.72019 * 10 9 7 12 12 C 1.50707 * 119.99730 * 179.72382 * 10 9 7 13 13 N 1.46899 * 109.46767 * 179.97438 * 12 10 9 14 14 C 1.46847 * 111.00029 * 71.96235 * 13 12 10 15 15 C 1.53037 * 109.52571 * 185.83591 * 14 13 12 16 16 C 1.53120 * 109.27528 * 300.81876 * 15 14 13 17 17 H 1.08999 * 109.51839 * 297.74174 * 16 15 14 18 18 C 1.50704 * 109.52046 * 177.55809 * 16 15 14 19 19 O 1.20823 * 119.99865 * 239.99911 * 18 16 15 20 20 O 1.34228 * 120.00260 * 59.99825 * 18 16 15 21 21 C 1.53120 * 109.16427 * 57.65433 * 16 15 14 22 22 C 1.46851 * 110.99777 * 196.16459 * 13 12 10 23 23 H 1.09006 * 109.46177 * 294.17916 * 22 13 12 24 24 C 1.53001 * 109.46243 * 54.14664 * 22 13 12 25 25 H 1.09006 * 110.33257 * 303.88959 * 24 22 13 26 26 C 1.54476 * 110.37297 * 181.63911 * 24 22 13 27 27 C 1.54511 * 104.06022 * 217.19337 * 26 24 22 28 28 C 1.54478 * 104.06674 * 359.97438 * 27 26 24 29 29 O 1.44427 * 110.37018 * 66.25463 * 24 22 13 30 30 H 0.97003 * 119.99970 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00315 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47055 * 299.99710 * 12 10 9 33 33 H 1.09006 * 109.47086 * 59.99978 * 12 10 9 34 34 H 1.09007 * 109.45815 * 305.85138 * 14 13 12 35 35 H 1.08999 * 109.46838 * 65.81314 * 14 13 12 36 36 H 1.09005 * 109.50349 * 60.75681 * 15 14 13 37 37 H 1.08995 * 109.50537 * 180.83578 * 15 14 13 38 38 H 0.96695 * 117.00359 * 180.02562 * 20 18 16 39 39 H 1.08998 * 109.50357 * 62.28134 * 21 16 15 40 40 H 1.08995 * 109.50458 * 182.40293 * 21 16 15 41 41 H 1.09000 * 110.50857 * 335.82871 * 26 24 22 42 42 H 1.08996 * 110.51356 * 98.54741 * 26 24 22 43 43 H 1.08998 * 110.51308 * 118.64545 * 27 26 24 44 44 H 1.09001 * 110.51152 * 241.35459 * 27 26 24 45 45 H 1.08993 * 110.37829 * 142.81142 * 28 27 26 46 46 H 1.09008 * 110.37336 * 265.04225 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0067 11 8 3.2103 -3.5578 0.0071 12 6 1.2439 -4.8629 0.0130 13 7 2.1985 -5.9794 0.0184 14 6 2.8632 -6.0972 1.3225 15 6 3.9502 -7.1718 1.2474 16 6 3.3137 -8.5081 0.8554 17 1 2.6010 -8.8110 1.6226 18 6 4.3873 -9.5571 0.7213 19 8 4.5514 -10.1221 -0.3340 20 8 5.1613 -9.8639 1.7742 21 6 2.5872 -8.3456 -0.4826 22 6 1.5397 -7.2369 -0.3573 23 1 0.8128 -7.5089 0.4082 24 6 0.8247 -7.0572 -1.6979 25 1 0.1225 -6.2252 -1.6442 26 6 0.0894 -8.3568 -2.0937 27 6 0.2682 -8.4373 -3.6264 28 6 1.0898 -7.1766 -3.9753 29 8 1.7850 -6.8400 -2.7546 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6169 -4.9162 0.9030 33 1 0.6175 -4.9251 -0.8770 34 1 3.3151 -5.1413 1.5874 35 1 2.1301 -6.3744 2.0801 36 1 4.6910 -6.8884 0.4997 37 1 4.4333 -7.2694 2.2195 38 1 5.8366 -10.5428 1.6397 39 1 3.3065 -8.0806 -1.2574 40 1 2.0960 -9.2822 -0.7462 41 1 0.5494 -9.2183 -1.6098 42 1 -0.9675 -8.2914 -1.8354 43 1 0.8164 -9.3388 -3.9001 44 1 -0.7004 -8.4118 -4.1257 45 1 1.8032 -7.3963 -4.7695 46 1 0.4284 -6.3634 -4.2746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:08 Heat of formation + Delta-G solvation = -191.611216 kcal Electronic energy + Delta-G solvation = -29337.051535 eV Core-core repulsion = 25225.484915 eV Total energy + Delta-G solvation = -4111.566620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78842 -40.84575 -39.95866 -38.69640 -37.10630 -35.93103 -34.72646 -33.31010 -33.19538 -32.46198 -29.53075 -28.67588 -26.85255 -25.23747 -24.97619 -23.08713 -22.18648 -21.57719 -20.93385 -20.55065 -19.82890 -18.99230 -18.04125 -17.72887 -17.13594 -17.01418 -16.58197 -16.45054 -16.32811 -16.18033 -15.93151 -15.52538 -15.25189 -14.81858 -14.72893 -14.38050 -14.27840 -13.98452 -13.70485 -13.44964 -13.28464 -13.03369 -12.79476 -12.59701 -12.52918 -12.50233 -12.39966 -12.29294 -12.16166 -12.11143 -11.90566 -11.76853 -11.50276 -11.45812 -11.32703 -11.15465 -10.54105 -10.22047 -9.95837 -9.07379 -8.43121 -5.91102 1.19732 1.40756 1.41990 1.52721 2.11236 2.12447 2.29932 2.66721 3.11937 3.23829 3.36225 3.53348 3.70003 3.79651 3.83931 3.93787 4.06543 4.12695 4.25631 4.30900 4.35481 4.38665 4.43905 4.48444 4.52657 4.59068 4.69966 4.71251 4.80693 4.87874 4.90177 4.93860 5.01638 5.09817 5.18527 5.19560 5.26802 5.39128 5.43727 5.63096 5.92700 6.04322 6.14894 6.32925 6.65912 7.01215 7.17683 7.62008 8.19194 8.74258 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.003561 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.959123 B = 7860.277761 C = 9412.820761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.577 5.577 10 C 0.445 3.555 11 O -0.613 6.613 12 C 0.055 3.945 13 N -0.529 5.529 14 C 0.062 3.938 15 C -0.094 4.094 16 C -0.077 4.077 17 H 0.138 0.862 18 C 0.492 3.508 19 O -0.548 6.548 20 O -0.509 6.509 21 C -0.083 4.083 22 C 0.095 3.905 23 H 0.083 0.917 24 C 0.068 3.932 25 H 0.070 0.930 26 C -0.146 4.146 27 C -0.146 4.146 28 C 0.029 3.971 29 O -0.383 6.383 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.426 0.574 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -21.629 1.156 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.215 5.215 10 C 0.232 3.768 11 O -0.499 6.499 12 C -0.076 4.076 13 N -0.255 5.255 14 C -0.066 4.066 15 C -0.132 4.132 16 C -0.096 4.096 17 H 0.156 0.844 18 C 0.336 3.664 19 O -0.439 6.439 20 O -0.323 6.323 21 C -0.121 4.121 22 C -0.012 4.012 23 H 0.100 0.900 24 C 0.011 3.989 25 H 0.087 0.913 26 C -0.184 4.184 27 C -0.183 4.183 28 C -0.047 4.047 29 O -0.303 6.303 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.288 0.712 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.886 -21.161 0.615 21.253 hybrid contribution -0.152 0.625 0.114 0.653 sum -2.037 -20.535 0.730 20.649 Atomic orbital electron populations 1.69664 1.06726 1.29193 1.50718 1.25971 0.96518 1.02187 0.96494 0.85038 0.77800 0.76940 0.78853 1.20035 1.19418 1.19667 1.19589 0.92582 0.84111 1.49722 0.90585 1.41912 1.09182 1.04640 1.65781 1.20808 0.88316 0.85885 0.81801 1.90480 1.15806 1.87808 1.55772 1.21793 0.93755 0.88749 1.03300 1.61295 1.30428 1.02740 1.30988 1.22066 0.96383 0.99278 0.88860 1.21447 0.97656 0.91539 1.02594 1.21180 0.94782 0.92174 1.01428 0.84430 1.23552 0.81061 0.81258 0.80545 1.90710 1.69714 1.52982 1.30482 1.84506 1.47644 1.59269 1.40836 1.21378 0.97607 0.97910 0.95175 1.21770 0.95146 0.88905 0.95421 0.89961 1.23306 0.90095 0.97659 0.87877 0.91280 1.23072 1.01987 0.97178 0.96175 1.22894 1.01354 0.98190 0.95900 1.23583 0.96209 0.96631 0.88326 1.89315 1.36091 1.88921 1.15942 0.91393 0.77144 0.90828 0.87745 0.92198 0.92617 0.93328 0.88476 0.71217 0.92600 0.89065 0.89404 0.88384 0.90300 0.88840 0.89228 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -30.16 5.29 -306.98 -1.62 -31.78 16 10 C 0.44 21.69 7.47 87.66 0.65 22.35 16 11 O -0.61 -34.90 14.43 -3.06 -0.04 -34.94 16 12 C 0.05 1.93 5.28 85.56 0.45 2.38 16 13 N -0.53 -17.29 4.10 -875.61 -3.59 -20.88 16 14 C 0.06 1.85 5.11 86.33 0.44 2.29 16 15 C -0.09 -2.41 5.31 30.65 0.16 -2.24 16 16 C -0.08 -1.58 2.70 -11.46 -0.03 -1.62 16 17 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 18 C 0.49 10.72 7.63 71.24 0.54 11.26 16 19 O -0.55 -15.53 16.74 21.97 0.37 -15.16 16 20 O -0.51 -8.00 13.35 -51.39 -0.69 -8.69 16 21 C -0.08 -1.97 3.53 30.65 0.11 -1.87 16 22 C 0.10 2.30 1.78 44.94 0.08 2.38 16 23 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 24 C 0.07 1.65 2.65 31.10 0.08 1.73 16 25 H 0.07 1.71 5.84 -2.38 -0.01 1.70 16 26 C -0.15 -2.38 6.46 31.61 0.20 -2.18 16 27 C -0.15 -2.38 7.09 31.61 0.22 -2.15 16 28 C 0.03 0.67 7.63 72.48 0.55 1.23 16 29 O -0.38 -11.98 10.45 -148.98 -1.56 -13.53 16 30 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.39 19.52 7.90 -92.71 -0.73 18.79 16 32 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 33 H 0.10 3.42 5.32 -2.38 -0.01 3.41 16 34 H 0.06 2.31 6.36 -2.38 -0.02 2.30 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.43 3.11 9.10 -74.06 -0.67 2.44 16 39 H 0.06 1.79 7.45 -2.39 -0.02 1.77 16 40 H 0.09 1.83 6.22 -2.39 -0.01 1.82 16 41 H 0.09 1.30 5.90 -2.39 -0.01 1.29 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.06 1.26 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -77.94 365.13 -0.45 -78.39 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -0.38 Total: 35.73 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 4.76 Total: 15.07 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -4.93 Total: -102.58 kcal Atomic # 8 Polarization: -70.40 SS G_CDS: -1.92 Total: -72.32 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -77.94 -0.45 -78.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.226 kcal (2) G-P(sol) polarization free energy of solvation -77.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds