Wall clock time and date at job start Fri Apr 10 2020 18:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00469 * 2 1 4 4 H 1.48503 * 109.47069 * 239.99995 * 3 2 1 5 5 H 1.48501 * 109.47015 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47599 * 119.99988 * 3 2 1 7 7 C 1.38814 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00268 * 158.71800 * 7 2 1 9 9 N 1.36939 * 119.99854 * 338.71690 * 7 2 1 10 10 C 1.46503 * 119.99841 * 322.57124 * 9 7 2 11 11 C 1.53003 * 109.47023 * 264.45402 * 10 9 7 12 12 O 1.42901 * 109.47107 * 65.00093 * 11 10 9 13 13 C 1.46499 * 120.00091 * 142.57298 * 9 7 2 14 14 H 1.08997 * 109.52635 * 179.97438 * 13 9 7 15 15 C 1.53355 * 109.68479 * 59.74883 * 13 9 7 16 16 C 1.53048 * 109.60448 * 178.74614 * 15 13 9 17 17 C 1.53193 * 109.30877 * 61.37838 * 16 15 13 18 18 N 1.46929 * 108.77551 * 305.35833 * 17 16 15 19 19 C 1.34773 * 120.63064 * 233.63413 * 18 17 16 20 20 O 1.21733 * 119.99873 * 175.96555 * 19 18 17 21 21 C 1.46374 * 119.99902 * 355.96354 * 19 18 17 22 22 C 1.33972 * 119.23608 * 318.49629 * 21 19 18 23 23 O 1.34998 * 121.69097 * 180.39253 * 22 21 19 24 24 C 1.43250 * 116.76655 * 342.79840 * 23 22 21 25 25 C 1.53556 * 108.08600 * 45.48511 * 24 23 22 26 26 O 1.36216 * 119.23155 * 138.22616 * 21 19 18 27 27 C 1.46928 * 118.73653 * 53.61521 * 18 17 16 28 28 H 0.96999 * 119.99954 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46987 * 24.45657 * 10 9 7 30 30 H 1.09001 * 109.46971 * 144.46147 * 10 9 7 31 31 H 1.09003 * 109.47034 * 185.00054 * 11 10 9 32 32 H 1.09000 * 109.47521 * 305.00159 * 11 10 9 33 33 H 0.96700 * 114.00356 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.41268 * 58.71416 * 15 13 9 35 35 H 1.08994 * 109.41877 * 298.78774 * 15 13 9 36 36 H 1.08996 * 109.49703 * 301.42382 * 16 15 13 37 37 H 1.09004 * 109.51922 * 181.34212 * 16 15 13 38 38 H 1.09002 * 109.57960 * 185.57504 * 17 16 15 39 39 H 1.09003 * 109.70783 * 65.22111 * 17 16 15 40 40 H 1.08007 * 119.15572 * 0.36781 * 22 21 19 41 41 H 1.08997 * 109.73973 * 165.13376 * 24 23 22 42 42 H 1.08999 * 109.73111 * 285.84201 * 24 23 22 43 43 H 1.08999 * 109.74955 * 61.47727 * 25 24 23 44 44 H 1.08994 * 109.75292 * 182.17179 * 25 24 23 45 45 H 1.08997 * 109.58575 * 66.17281 * 27 18 17 46 46 H 1.08998 * 109.58167 * 186.46161 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0350 -1.2343 -0.3389 9 7 1.3955 -2.3474 0.4315 10 6 0.4663 -2.2987 1.5631 11 6 1.2100 -2.6629 2.8497 12 8 2.1967 -1.6674 3.1276 13 6 1.6670 -3.6214 -0.2390 14 1 1.0925 -4.4145 0.2394 15 6 3.1631 -3.9452 -0.1465 16 6 3.4398 -5.2913 -0.8201 17 6 3.0554 -5.2054 -2.3005 18 7 1.6603 -4.7556 -2.4015 19 6 0.7600 -5.4642 -3.1113 20 8 -0.4081 -5.1218 -3.1272 21 6 1.1868 -6.6454 -3.8630 22 6 2.3389 -6.6057 -4.5455 23 8 2.7759 -7.6634 -5.2616 24 6 2.1784 -8.9319 -4.9686 25 6 0.6589 -8.7325 -4.8726 26 8 0.4060 -7.7615 -3.8477 27 6 1.2653 -3.5188 -1.7137 28 1 -0.4850 0.8400 -0.0004 29 1 0.0557 -1.2931 1.6530 30 1 -0.3442 -3.0088 1.3986 31 1 0.5018 -2.7135 3.6768 32 1 1.6952 -3.6312 2.7272 33 1 2.7078 -1.8338 3.9315 34 1 3.4587 -3.9960 0.9015 35 1 3.7346 -3.1640 -0.6476 36 1 2.8494 -6.0688 -0.3354 37 1 4.4995 -5.5313 -0.7327 38 1 3.1569 -6.1877 -2.7619 39 1 3.7064 -4.4940 -2.8087 40 1 2.9332 -5.7041 -4.5226 41 1 2.4072 -9.6395 -5.7655 42 1 2.5610 -9.3085 -4.0199 43 1 0.2734 -8.3747 -5.8273 44 1 0.1793 -9.6759 -4.6119 45 1 1.7707 -2.6686 -2.1717 46 1 0.1860 -3.3870 -1.7901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691520975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:17 Heat of formation + Delta-G solvation = -97.887987 kcal Electronic energy + Delta-G solvation = -29598.792375 eV Core-core repulsion = 25491.289899 eV Total energy + Delta-G solvation = -4107.502476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29520 -39.56577 -37.56539 -36.94746 -36.12174 -34.67717 -32.79364 -31.76407 -31.19682 -29.84686 -28.78080 -27.14205 -25.90649 -24.67561 -24.01920 -22.40746 -21.44891 -20.37834 -19.77016 -19.21240 -18.44076 -17.33655 -16.73348 -16.55205 -16.30396 -16.09409 -15.20482 -14.97575 -14.84526 -14.50631 -14.36590 -14.29914 -14.08315 -13.70993 -13.59088 -13.38635 -13.19037 -12.66948 -12.51945 -12.51528 -12.29358 -11.89097 -11.33854 -11.25456 -11.20188 -10.84975 -10.82517 -10.71352 -10.59258 -10.45942 -10.09643 -10.01224 -9.84671 -9.64353 -9.55804 -9.08177 -8.39684 -8.29665 -8.12957 -6.51134 -5.70485 -3.24998 1.40882 2.58660 2.98446 3.24018 3.45567 3.51617 3.56502 3.68566 4.06755 4.55518 4.57577 4.61417 4.71047 4.88378 5.00023 5.06168 5.21094 5.23502 5.24090 5.36112 5.41994 5.51425 5.66523 5.77666 5.85444 5.95376 6.06869 6.11725 6.19599 6.32596 6.33426 6.50224 6.60212 6.65695 6.68724 6.78127 6.87935 7.08803 7.10973 7.22566 7.68153 7.69327 7.91177 8.39839 8.47482 8.64712 9.25419 9.89573 10.45427 11.32454 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.003417 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.987229 B = 8192.400450 C = 8475.276319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.019 3.981 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.057 0.943 9 N -0.566 5.566 10 C 0.146 3.854 11 C 0.060 3.940 12 O -0.544 6.544 13 C 0.167 3.833 14 H 0.049 0.951 15 C -0.126 4.126 16 C -0.130 4.130 17 C 0.091 3.909 18 N -0.594 5.594 19 C 0.570 3.430 20 O -0.525 6.525 21 C -0.058 4.058 22 C -0.014 4.014 23 O -0.303 6.303 24 C 0.014 3.986 25 C 0.017 3.983 26 O -0.288 6.288 27 C 0.109 3.891 28 H 0.254 0.746 29 H 0.102 0.898 30 H 0.038 0.962 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.349 0.651 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.186 0.814 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.120 0.880 45 H 0.080 0.920 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.094 -17.748 -5.300 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.181 4.181 3 Si 0.727 3.273 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.075 0.925 9 N -0.285 5.285 10 C 0.020 3.980 11 C -0.021 4.021 12 O -0.345 6.345 13 C 0.058 3.942 14 H 0.067 0.933 15 C -0.166 4.166 16 C -0.169 4.169 17 C -0.032 4.032 18 N -0.329 5.329 19 C 0.357 3.643 20 O -0.402 6.402 21 C -0.107 4.107 22 C -0.079 4.079 23 O -0.216 6.216 24 C -0.061 4.061 25 C -0.059 4.059 26 O -0.202 6.202 27 C -0.014 4.014 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.192 0.808 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.202 0.798 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.138 0.862 45 H 0.098 0.902 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.046 -17.183 -5.888 19.144 hybrid contribution 0.683 0.374 0.543 0.949 sum 6.728 -16.810 -5.346 18.879 Atomic orbital electron populations 1.69994 1.05564 1.25768 1.51874 1.25077 0.94876 0.98572 0.99592 0.86482 0.79224 0.83555 0.78054 1.21098 1.21954 1.20800 1.18725 0.93605 0.85259 1.39839 0.92496 1.43646 1.51286 1.02783 1.30794 1.20995 0.90047 1.03524 0.83447 1.23084 0.90127 0.89973 0.98889 1.86853 1.52199 1.49305 1.46118 1.20693 0.93132 0.89677 0.90688 0.93276 1.22032 0.99530 0.94892 1.00129 1.21914 1.00792 0.99438 0.94779 1.22180 0.82393 1.00294 0.98284 1.48191 1.09385 1.26099 1.49229 1.17148 0.85697 0.81796 0.79669 1.90858 1.17101 1.69508 1.62705 1.20588 0.91954 0.90597 1.07542 1.23276 0.94007 0.92732 0.97935 1.86100 1.61148 1.15391 1.58915 1.23692 0.93737 0.84844 1.03860 1.23672 0.96231 0.93510 0.92461 1.86471 1.56661 1.27017 1.50014 1.22446 1.02484 0.82782 0.93655 0.93627 0.88051 0.94419 0.96200 0.95973 0.80833 0.92319 0.91466 0.92084 0.91299 0.89753 0.90951 0.79776 0.86309 0.90176 0.90453 0.86204 0.90198 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 11.54 55.49 0.64 -24.99 16 2 C 0.02 0.52 4.90 -17.43 -0.09 0.43 16 3 Si 0.90 22.03 29.60 -169.99 -5.03 17.00 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.42 7.90 -15.06 -0.12 -6.54 16 8 H 0.06 1.50 6.90 -52.48 -0.36 1.14 16 9 N -0.57 -13.47 2.33 -165.34 -0.39 -13.85 16 10 C 0.15 3.42 5.56 -4.04 -0.02 3.40 16 11 C 0.06 1.17 7.39 37.16 0.27 1.44 16 12 O -0.54 -11.26 13.40 -35.23 -0.47 -11.73 16 13 C 0.17 3.37 2.80 -67.65 -0.19 3.18 16 14 H 0.05 1.00 7.87 -51.93 -0.41 0.59 16 15 C -0.13 -2.15 5.12 -26.52 -0.14 -2.29 16 16 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 17 C 0.09 1.17 4.83 -3.71 -0.02 1.15 16 18 N -0.59 -10.04 2.97 -174.41 -0.52 -10.56 16 19 C 0.57 10.44 7.37 -12.99 -0.10 10.34 16 20 O -0.52 -11.95 16.52 -1.65 -0.03 -11.98 16 21 C -0.06 -0.85 5.89 -37.81 -0.22 -1.08 16 22 C -0.01 -0.17 8.32 29.23 0.24 0.08 16 23 O -0.30 -3.16 10.47 -30.82 -0.32 -3.49 16 24 C 0.01 0.10 7.29 37.45 0.27 0.38 16 25 C 0.02 0.15 7.32 37.45 0.27 0.43 16 26 O -0.29 -4.14 10.48 -42.08 -0.44 -4.58 16 27 C 0.11 2.23 5.76 -3.71 -0.02 2.21 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.10 2.74 5.58 -51.93 -0.29 2.45 16 30 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.35 5.24 9.12 45.56 0.42 5.66 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.23 7.06 -51.93 -0.37 0.86 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.92 4.67 -51.93 -0.24 0.68 16 39 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.19 1.92 6.33 -52.48 -0.33 1.58 16 41 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.75 7.50 -51.93 -0.39 1.36 16 46 H 0.09 2.16 6.99 -51.93 -0.36 1.79 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -34.45 364.94 -7.18 -41.63 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.12 Total: 5.79 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -0.01 Total: 11.26 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.26 Total: -49.40 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.26 Total: -31.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.45 -7.18 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691520975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.258 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds