Wall clock time and date at job start Fri Apr 10 2020 18:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00469 * 2 1 4 4 H 1.48503 * 109.47069 * 239.99995 * 3 2 1 5 5 H 1.48501 * 109.47015 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47599 * 119.99988 * 3 2 1 7 7 C 1.38814 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00268 * 158.71800 * 7 2 1 9 9 N 1.36939 * 119.99854 * 338.71690 * 7 2 1 10 10 C 1.46503 * 119.99841 * 322.57124 * 9 7 2 11 11 C 1.53003 * 109.47023 * 264.45402 * 10 9 7 12 12 O 1.42901 * 109.47107 * 65.00093 * 11 10 9 13 13 C 1.46499 * 120.00091 * 142.57298 * 9 7 2 14 14 H 1.08997 * 109.52635 * 179.97438 * 13 9 7 15 15 C 1.53355 * 109.68479 * 59.74883 * 13 9 7 16 16 C 1.53048 * 109.60448 * 178.74614 * 15 13 9 17 17 C 1.53193 * 109.30877 * 61.37838 * 16 15 13 18 18 N 1.46929 * 108.77551 * 305.35833 * 17 16 15 19 19 C 1.34773 * 120.63064 * 233.63413 * 18 17 16 20 20 O 1.21733 * 119.99873 * 175.96555 * 19 18 17 21 21 C 1.46374 * 119.99902 * 355.96354 * 19 18 17 22 22 C 1.33972 * 119.23608 * 318.49629 * 21 19 18 23 23 O 1.34998 * 121.69097 * 180.39253 * 22 21 19 24 24 C 1.43250 * 116.76655 * 342.79840 * 23 22 21 25 25 C 1.53556 * 108.08600 * 45.48511 * 24 23 22 26 26 O 1.36216 * 119.23155 * 138.22616 * 21 19 18 27 27 C 1.46928 * 118.73653 * 53.61521 * 18 17 16 28 28 H 0.96999 * 119.99954 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46987 * 24.45657 * 10 9 7 30 30 H 1.09001 * 109.46971 * 144.46147 * 10 9 7 31 31 H 1.09003 * 109.47034 * 185.00054 * 11 10 9 32 32 H 1.09000 * 109.47521 * 305.00159 * 11 10 9 33 33 H 0.96700 * 114.00356 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.41268 * 58.71416 * 15 13 9 35 35 H 1.08994 * 109.41877 * 298.78774 * 15 13 9 36 36 H 1.08996 * 109.49703 * 301.42382 * 16 15 13 37 37 H 1.09004 * 109.51922 * 181.34212 * 16 15 13 38 38 H 1.09002 * 109.57960 * 185.57504 * 17 16 15 39 39 H 1.09003 * 109.70783 * 65.22111 * 17 16 15 40 40 H 1.08007 * 119.15572 * 0.36781 * 22 21 19 41 41 H 1.08997 * 109.73973 * 165.13376 * 24 23 22 42 42 H 1.08999 * 109.73111 * 285.84201 * 24 23 22 43 43 H 1.08999 * 109.74955 * 61.47727 * 25 24 23 44 44 H 1.08994 * 109.75292 * 182.17179 * 25 24 23 45 45 H 1.08997 * 109.58575 * 66.17281 * 27 18 17 46 46 H 1.08998 * 109.58167 * 186.46161 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0350 -1.2343 -0.3389 9 7 1.3955 -2.3474 0.4315 10 6 0.4663 -2.2987 1.5631 11 6 1.2100 -2.6629 2.8497 12 8 2.1967 -1.6674 3.1276 13 6 1.6670 -3.6214 -0.2390 14 1 1.0925 -4.4145 0.2394 15 6 3.1631 -3.9452 -0.1465 16 6 3.4398 -5.2913 -0.8201 17 6 3.0554 -5.2054 -2.3005 18 7 1.6603 -4.7556 -2.4015 19 6 0.7600 -5.4642 -3.1113 20 8 -0.4081 -5.1218 -3.1272 21 6 1.1868 -6.6454 -3.8630 22 6 2.3389 -6.6057 -4.5455 23 8 2.7759 -7.6634 -5.2616 24 6 2.1784 -8.9319 -4.9686 25 6 0.6589 -8.7325 -4.8726 26 8 0.4060 -7.7615 -3.8477 27 6 1.2653 -3.5188 -1.7137 28 1 -0.4850 0.8400 -0.0004 29 1 0.0557 -1.2931 1.6530 30 1 -0.3442 -3.0088 1.3986 31 1 0.5018 -2.7135 3.6768 32 1 1.6952 -3.6312 2.7272 33 1 2.7078 -1.8338 3.9315 34 1 3.4587 -3.9960 0.9015 35 1 3.7346 -3.1640 -0.6476 36 1 2.8494 -6.0688 -0.3354 37 1 4.4995 -5.5313 -0.7327 38 1 3.1569 -6.1877 -2.7619 39 1 3.7064 -4.4940 -2.8087 40 1 2.9332 -5.7041 -4.5226 41 1 2.4072 -9.6395 -5.7655 42 1 2.5610 -9.3085 -4.0199 43 1 0.2734 -8.3747 -5.8273 44 1 0.1793 -9.6759 -4.6119 45 1 1.7707 -2.6686 -2.1717 46 1 0.1860 -3.3870 -1.7901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691520975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:17 Heat of formation + Delta-G solvation = -124.589199 kcal Electronic energy + Delta-G solvation = -29599.950227 eV Core-core repulsion = 25491.289899 eV Total energy + Delta-G solvation = -4108.660327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.27070 -40.85640 -39.03100 -38.03920 -37.60950 -36.32781 -34.22969 -32.98114 -32.84215 -31.23739 -29.88630 -28.86412 -27.01586 -25.97312 -25.63878 -23.83870 -22.68771 -21.97847 -21.09229 -20.43484 -19.31986 -18.50256 -18.28934 -18.15697 -17.57561 -17.26940 -16.79239 -16.43018 -15.96683 -15.80923 -15.75286 -15.37738 -15.29977 -15.19614 -15.00146 -14.67261 -14.57215 -14.18290 -14.05384 -13.88355 -13.43791 -13.20644 -13.05081 -12.94932 -12.71880 -12.43943 -12.24934 -12.01817 -11.91761 -11.79674 -11.68464 -11.60560 -11.58069 -11.28023 -11.00623 -10.63991 -10.40225 -9.75689 -9.15611 -8.47881 -7.75022 -5.32320 0.34201 1.43516 1.47567 1.52858 1.58593 1.93478 2.20597 2.56135 2.64901 3.37149 3.43449 3.54531 3.56049 3.79941 3.92442 4.01348 4.05420 4.07754 4.13480 4.24585 4.31244 4.45345 4.46854 4.53721 4.59547 4.65184 4.66217 4.77361 4.85029 4.90246 4.91928 5.00297 5.03261 5.08998 5.20619 5.44176 5.48612 5.61058 5.73609 5.76705 5.81462 6.25536 6.41343 6.54350 7.02569 7.19761 7.26713 7.93105 8.45677 9.24310 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.003417 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.987229 B = 8192.400450 C = 8475.276319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.035 4.035 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.301 1.301 6 H -0.283 1.283 7 C -0.231 4.231 8 H 0.058 0.942 9 N -0.580 5.580 10 C 0.141 3.859 11 C 0.073 3.927 12 O -0.572 6.572 13 C 0.166 3.834 14 H 0.044 0.956 15 C -0.114 4.114 16 C -0.121 4.121 17 C 0.087 3.913 18 N -0.590 5.590 19 C 0.564 3.436 20 O -0.588 6.588 21 C -0.090 4.090 22 C 0.030 3.970 23 O -0.303 6.303 24 C 0.013 3.987 25 C 0.008 3.992 26 O -0.321 6.321 27 C 0.125 3.875 28 H 0.246 0.754 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.376 0.624 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.201 0.799 41 H 0.157 0.843 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.149 0.851 45 H 0.062 0.938 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.590 -20.575 -5.878 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.231 4.231 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.228 1.228 6 H -0.210 1.210 7 C -0.361 4.361 8 H 0.076 0.924 9 N -0.300 5.300 10 C 0.014 3.986 11 C -0.007 4.007 12 O -0.377 6.377 13 C 0.058 3.942 14 H 0.063 0.937 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.034 4.034 18 N -0.323 5.323 19 C 0.354 3.646 20 O -0.470 6.470 21 C -0.139 4.139 22 C -0.037 4.037 23 O -0.215 6.215 24 C -0.062 4.062 25 C -0.067 4.067 26 O -0.236 6.236 27 C 0.001 3.999 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.222 0.778 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.218 0.782 41 H 0.175 0.825 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.167 0.833 45 H 0.080 0.920 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.624 -20.068 -6.463 23.176 hybrid contribution -0.375 1.088 0.655 1.324 sum 9.249 -18.980 -5.807 21.898 Atomic orbital electron populations 1.70145 1.06874 1.25564 1.54431 1.25705 0.95404 1.01251 1.00772 0.85611 0.77920 0.80354 0.78097 1.20014 1.22807 1.20956 1.18905 0.93459 0.86037 1.37736 0.92423 1.43835 1.51124 1.03423 1.31606 1.20918 0.90675 1.01325 0.85669 1.22785 0.90374 0.90150 0.97402 1.86763 1.52814 1.50000 1.48131 1.20837 0.95685 0.87932 0.89705 0.93723 1.21854 0.95915 0.97008 1.00556 1.21889 1.03275 0.96693 0.94085 1.22544 0.79799 1.02153 0.98894 1.48166 1.11205 1.24645 1.48309 1.17791 0.84917 0.82610 0.79301 1.90814 1.19831 1.71215 1.65143 1.19969 0.93687 0.90219 1.09981 1.23447 0.92235 0.93383 0.94601 1.86119 1.60971 1.16181 1.58244 1.24063 0.92205 0.83759 1.06155 1.24052 0.97904 0.93363 0.91341 1.86403 1.57684 1.27500 1.52037 1.21925 0.99285 0.84185 0.94486 0.94531 0.91828 0.94853 0.93716 0.94238 0.77795 0.92399 0.92524 0.91962 0.87331 0.87034 0.88896 0.78229 0.82508 0.88846 0.90660 0.83335 0.92019 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 11.54 21.65 0.25 -55.75 16 2 C -0.04 -1.98 4.90 84.86 0.42 -1.57 16 3 Si 0.95 46.32 29.60 68.60 2.03 48.35 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 7 C -0.23 -12.36 7.90 84.03 0.66 -11.70 16 8 H 0.06 3.05 6.90 -2.91 -0.02 3.03 16 9 N -0.58 -28.32 2.33 -677.01 -1.58 -29.90 16 10 C 0.14 6.78 5.56 86.38 0.48 7.26 16 11 C 0.07 2.79 7.39 71.98 0.53 3.32 16 12 O -0.57 -23.03 13.40 -148.98 -2.00 -25.03 16 13 C 0.17 6.82 2.80 45.18 0.13 6.95 16 14 H 0.04 1.86 7.87 -2.39 -0.02 1.84 16 15 C -0.11 -3.68 5.12 30.73 0.16 -3.52 16 16 C -0.12 -2.74 6.08 30.67 0.19 -2.55 16 17 C 0.09 1.96 4.83 86.36 0.42 2.37 16 18 N -0.59 -19.95 2.97 -823.93 -2.45 -22.40 16 19 C 0.56 21.21 7.37 86.36 0.64 21.85 16 20 O -0.59 -28.71 16.52 2.05 0.03 -28.67 16 21 C -0.09 -2.57 5.89 23.42 0.14 -2.43 16 22 C 0.03 0.61 8.32 66.85 0.56 1.17 16 23 O -0.30 -5.04 10.47 -69.20 -0.72 -5.77 16 24 C 0.01 0.13 7.29 72.17 0.53 0.66 16 25 C 0.01 0.12 7.32 72.17 0.53 0.65 16 26 O -0.32 -8.97 10.48 -75.32 -0.79 -9.76 16 27 C 0.13 5.39 5.76 86.36 0.50 5.88 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.06 3.60 5.58 -2.39 -0.01 3.59 16 30 H 0.03 1.58 8.04 -2.39 -0.02 1.56 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.38 10.49 9.12 -74.06 -0.68 9.81 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.96 7.06 -2.39 -0.02 1.94 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 1.96 4.67 -2.39 -0.01 1.95 16 39 H 0.09 1.79 8.11 -2.39 -0.02 1.77 16 40 H 0.20 3.39 6.33 -2.91 -0.02 3.37 16 41 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 2.84 7.50 -2.39 -0.02 2.82 16 46 H 0.04 2.20 6.99 -2.39 -0.02 2.18 16 Total: -1.00 -81.61 364.94 0.97 -80.64 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.33 Total: 19.94 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 5.86 Total: 28.35 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -3.78 Total: -108.05 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -3.48 Total: -69.23 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -81.61 0.97 -80.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691520975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.949 kcal (2) G-P(sol) polarization free energy of solvation -81.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds