Wall clock time and date at job start Fri Apr 10 2020 18:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48501 * 109.47445 * 239.99853 * 3 2 1 5 5 H 1.48501 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47233 * 119.99845 * 3 2 1 7 7 C 1.38808 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00353 * 191.03303 * 7 2 1 9 9 N 1.36938 * 119.99651 * 11.03251 * 7 2 1 10 10 C 1.46920 * 120.63252 * 31.70464 * 9 7 2 11 11 C 1.53193 * 108.77720 * 126.41241 * 10 9 7 12 12 C 1.53042 * 109.31511 * 54.63540 * 11 10 9 13 13 C 1.52988 * 109.46113 * 178.62954 * 12 11 10 14 14 O 1.42904 * 109.47248 * 180.76138 * 13 12 11 15 15 N 1.46502 * 109.45516 * 58.65478 * 12 11 10 16 16 C 1.34775 * 120.00132 * 62.66640 * 15 12 11 17 17 O 1.21284 * 119.99814 * 354.88822 * 16 15 12 18 18 C 1.50702 * 119.99929 * 174.88262 * 16 15 12 19 19 C 1.53001 * 109.46730 * 180.02562 * 18 16 15 20 20 H 1.08997 * 110.75191 * 51.53187 * 19 18 16 21 21 C 1.54266 * 111.01857 * 287.93601 * 19 18 16 22 22 O 1.45369 * 106.63094 * 226.53637 * 21 19 18 23 23 C 1.34249 * 111.58466 * 357.89614 * 22 21 19 24 24 O 1.20826 * 125.82719 * 199.57120 * 23 22 21 25 25 C 1.51664 * 108.47176 * 19.37564 * 23 22 21 26 26 C 1.53040 * 109.53637 * 298.63896 * 12 11 10 27 27 C 1.46934 * 120.62932 * 211.72541 * 9 7 2 28 28 H 0.97003 * 120.00619 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.58862 * 6.62808 * 10 9 7 30 30 H 1.08998 * 109.70599 * 246.26697 * 10 9 7 31 31 H 1.09004 * 109.49768 * 294.68463 * 11 10 9 32 32 H 1.09000 * 109.52538 * 174.60769 * 11 10 9 33 33 H 1.09001 * 109.47593 * 300.76009 * 13 12 11 34 34 H 1.08998 * 109.47785 * 60.75995 * 13 12 11 35 35 H 0.96696 * 114.00151 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00003 * 242.65999 * 15 12 11 37 37 H 1.08994 * 109.46906 * 60.00427 * 18 16 15 38 38 H 1.09002 * 109.46988 * 299.99981 * 18 16 15 39 39 H 1.08993 * 110.02859 * 345.83856 * 21 19 18 40 40 H 1.09007 * 110.02021 * 107.24833 * 21 19 18 41 41 H 1.09001 * 110.70548 * 213.25801 * 25 23 22 42 42 H 1.09003 * 110.70899 * 90.19060 * 25 23 22 43 43 H 1.09004 * 109.50013 * 181.31440 * 26 12 11 44 44 H 1.09004 * 109.49594 * 301.41082 * 26 12 11 45 45 H 1.08992 * 109.58561 * 353.37584 * 27 9 7 46 46 H 1.08998 * 109.58534 * 113.66258 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0753 -1.2108 0.1784 9 7 1.3445 -2.3769 -0.2280 10 6 0.1679 -2.4125 -1.1071 11 6 0.3858 -3.4847 -2.1794 12 6 0.7055 -4.8197 -1.5028 13 6 0.8901 -5.9005 -2.5697 14 8 1.1711 -7.1509 -1.9375 15 7 -0.3984 -5.1935 -0.6151 16 6 -1.6247 -5.4235 -1.1247 17 8 -1.8375 -5.2313 -2.3032 18 6 -2.7315 -5.9194 -0.2302 19 6 -4.0098 -6.0979 -1.0518 20 1 -3.8176 -6.7014 -1.9389 21 6 -4.6150 -4.7323 -1.4373 22 8 -6.0378 -4.8117 -1.1499 23 6 -6.3828 -6.0270 -0.6957 24 8 -7.4989 -6.4899 -0.6914 25 6 -5.1336 -6.7244 -0.1925 26 6 1.9928 -4.6843 -0.6864 27 6 1.7932 -3.6258 0.4028 28 1 -0.4851 0.8400 -0.0004 29 1 0.0379 -1.4407 -1.5833 30 1 -0.7200 -2.6550 -0.5231 31 1 1.2175 -3.1937 -2.8211 32 1 -0.5180 -3.5883 -2.7799 33 1 -0.0224 -5.9886 -3.1595 34 1 1.7196 -5.6289 -3.2225 35 1 1.3004 -7.8836 -2.5551 36 1 -0.2466 -5.2756 0.3394 37 1 -2.9083 -5.1950 0.5647 38 1 -2.4444 -6.8758 0.2069 39 1 -4.1579 -3.9405 -0.8439 40 1 -4.4588 -4.5412 -2.4991 41 1 -5.1964 -7.7990 -0.3643 42 1 -4.9735 -6.5132 0.8648 43 1 2.2326 -5.6417 -0.2237 44 1 2.8094 -4.3820 -1.3422 45 1 2.7355 -3.4544 0.9229 46 1 1.0404 -3.9672 1.1133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755177049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:40 Heat of formation + Delta-G solvation = -146.886868 kcal Electronic energy + Delta-G solvation = -29561.777142 eV Core-core repulsion = 25452.149915 eV Total energy + Delta-G solvation = -4109.627227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.15644 -40.18383 -37.97439 -37.37891 -36.18595 -34.40873 -34.05675 -32.05796 -30.70436 -29.85555 -28.91538 -27.26609 -26.73990 -23.95217 -22.46153 -22.14920 -21.50633 -20.88591 -20.10206 -18.76525 -17.68608 -17.26114 -17.05061 -16.82429 -16.56870 -16.16788 -15.41526 -15.13738 -14.93532 -14.56760 -14.19715 -13.99606 -13.78463 -13.58196 -13.51045 -13.32452 -13.10815 -12.86657 -12.77321 -12.31109 -12.16374 -11.91718 -11.63652 -11.46655 -11.41150 -11.26596 -10.92693 -10.77653 -10.57913 -10.46398 -10.35022 -10.32660 -10.10979 -10.00987 -9.79144 -9.62857 -9.13267 -8.65068 -8.52305 -6.66858 -5.83529 -3.32052 1.89334 2.82722 3.13342 3.30828 3.34505 3.40670 3.40993 3.75507 4.02872 4.35830 4.39000 4.44559 4.50585 4.85226 5.05069 5.07814 5.21848 5.26343 5.30879 5.36320 5.38252 5.45312 5.47776 5.60337 5.63181 5.70072 5.80673 5.85430 6.02894 6.18187 6.27158 6.44738 6.57536 6.62729 6.67377 6.70778 6.83800 6.96861 7.29848 7.32268 7.63937 7.67732 7.74179 7.82006 8.42698 8.45345 9.17454 9.78448 10.36421 11.24286 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003752 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.197619 B = 7461.209847 C = 9123.579485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.182 3.818 11 C -0.152 4.152 12 C 0.194 3.806 13 C 0.062 3.938 14 O -0.570 6.570 15 N -0.698 5.698 16 C 0.517 3.483 17 O -0.547 6.547 18 C -0.135 4.135 19 C -0.102 4.102 20 H 0.107 0.893 21 C 0.063 3.937 22 O -0.352 6.352 23 C 0.487 3.513 24 O -0.462 6.462 25 C -0.186 4.186 26 C -0.134 4.134 27 C 0.145 3.855 28 H 0.255 0.745 29 H 0.086 0.914 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.370 0.630 36 H 0.400 0.600 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 -15.382 -1.600 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.057 3.943 11 C -0.192 4.192 12 C 0.108 3.892 13 C -0.017 4.017 14 O -0.374 6.374 15 N -0.348 5.348 16 C 0.303 3.697 17 O -0.426 6.426 18 C -0.175 4.175 19 C -0.121 4.121 20 H 0.125 0.875 21 C -0.010 4.010 22 O -0.268 6.268 23 C 0.328 3.672 24 O -0.346 6.346 25 C -0.224 4.224 26 C -0.173 4.173 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.216 0.784 36 H 0.235 0.765 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.460 -14.736 -1.922 15.258 hybrid contribution 0.844 0.484 0.019 0.973 sum -2.616 -14.252 -1.903 14.615 Atomic orbital electron populations 1.69951 1.05260 1.25671 1.53829 1.25150 0.95373 0.98382 1.00265 0.86362 0.78873 0.83292 0.78125 1.20979 1.21588 1.20864 1.19114 0.90874 0.84008 1.44676 0.91945 1.44026 1.32813 1.03354 1.51214 1.20640 0.88122 0.96513 0.89055 1.22612 1.01808 0.94455 1.00371 1.20301 0.86538 0.92825 0.89506 1.22761 0.99824 0.83802 0.95267 1.86463 1.94365 1.18805 1.37746 1.45900 1.08759 1.68992 1.11174 1.20300 0.83401 0.77307 0.88655 1.90617 1.82348 1.52622 1.16976 1.21721 0.92883 1.04012 0.98856 1.22205 0.93542 0.96900 0.99449 0.87506 1.24130 0.74756 0.98152 1.04002 1.86835 1.29135 1.33382 1.77485 1.23179 0.89951 0.80048 0.74040 1.90711 1.25055 1.65732 1.53112 1.23174 0.93289 1.03103 1.02860 1.22245 0.95537 0.99872 0.99657 1.20895 0.97729 0.87192 0.92338 0.93514 0.89630 0.96462 0.92176 0.90818 0.91676 0.93579 0.78437 0.76532 0.88119 0.87984 0.88185 0.87662 0.87047 0.86458 0.91727 0.91082 0.92584 0.96839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.29 11.10 55.49 0.62 -24.68 16 2 C 0.01 0.20 5.04 -17.44 -0.09 0.11 16 3 Si 0.90 21.13 29.57 -169.99 -5.03 16.10 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.75 9.57 -15.06 -0.14 -6.89 16 8 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 9 N -0.59 -13.81 2.98 -172.32 -0.51 -14.33 16 10 C 0.18 4.11 4.99 -3.71 -0.02 4.09 16 11 C -0.15 -2.82 4.71 -26.61 -0.13 -2.94 16 12 C 0.19 3.00 0.44 -131.78 -0.06 2.94 16 13 C 0.06 0.84 5.68 37.15 0.21 1.05 16 14 O -0.57 -6.88 12.84 -35.23 -0.45 -7.33 16 15 N -0.70 -9.58 3.98 -47.57 -0.19 -9.76 16 16 C 0.52 6.66 7.08 -10.99 -0.08 6.58 16 17 O -0.55 -8.33 11.61 5.55 0.06 -8.27 16 18 C -0.13 -1.17 5.00 -27.88 -0.14 -1.31 16 19 C -0.10 -0.90 2.65 -89.05 -0.24 -1.13 16 20 H 0.11 0.97 7.88 -51.93 -0.41 0.56 16 21 C 0.06 0.69 6.82 37.82 0.26 0.95 16 22 O -0.35 -4.55 10.96 -38.91 -0.43 -4.98 16 23 C 0.49 5.96 8.65 36.48 0.32 6.27 16 24 O -0.46 -7.16 18.00 -18.35 -0.33 -7.49 16 25 C -0.19 -1.46 6.50 -26.50 -0.17 -1.63 16 26 C -0.13 -2.12 4.85 -26.61 -0.13 -2.25 16 27 C 0.15 2.75 6.24 -3.71 -0.02 2.73 16 28 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.09 2.24 6.15 -51.93 -0.32 1.92 16 30 H 0.02 0.41 7.74 -51.93 -0.40 0.00 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.38 6.23 -51.93 -0.32 1.06 16 33 H 0.07 0.95 6.17 -51.93 -0.32 0.63 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.37 2.89 9.12 45.56 0.42 3.31 16 36 H 0.40 5.06 7.20 -40.82 -0.29 4.76 16 37 H 0.10 0.80 7.97 -51.93 -0.41 0.39 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.10 7.67 -51.93 -0.40 0.71 16 40 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.12 0.72 7.91 -51.93 -0.41 0.31 16 43 H 0.06 0.94 7.66 -51.93 -0.40 0.54 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.01 0.25 6.90 -51.93 -0.36 -0.11 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -32.62 362.10 -7.35 -39.98 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.13 Total: 6.75 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.43 Total: 8.56 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.09 Total: -48.77 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.14 Total: -28.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.62 -7.35 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755177049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.911 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds