Wall clock time and date at job start Fri Apr 10 2020 18:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48501 * 109.47445 * 239.99853 * 3 2 1 5 5 H 1.48501 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47233 * 119.99845 * 3 2 1 7 7 C 1.38808 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00353 * 191.03303 * 7 2 1 9 9 N 1.36938 * 119.99651 * 11.03251 * 7 2 1 10 10 C 1.46920 * 120.63252 * 31.70464 * 9 7 2 11 11 C 1.53193 * 108.77720 * 126.41241 * 10 9 7 12 12 C 1.53042 * 109.31511 * 54.63540 * 11 10 9 13 13 C 1.52988 * 109.46113 * 178.62954 * 12 11 10 14 14 O 1.42904 * 109.47248 * 180.76138 * 13 12 11 15 15 N 1.46502 * 109.45516 * 58.65478 * 12 11 10 16 16 C 1.34775 * 120.00132 * 62.66640 * 15 12 11 17 17 O 1.21284 * 119.99814 * 354.88822 * 16 15 12 18 18 C 1.50702 * 119.99929 * 174.88262 * 16 15 12 19 19 C 1.53001 * 109.46730 * 180.02562 * 18 16 15 20 20 H 1.08997 * 110.75191 * 51.53187 * 19 18 16 21 21 C 1.54266 * 111.01857 * 287.93601 * 19 18 16 22 22 O 1.45369 * 106.63094 * 226.53637 * 21 19 18 23 23 C 1.34249 * 111.58466 * 357.89614 * 22 21 19 24 24 O 1.20826 * 125.82719 * 199.57120 * 23 22 21 25 25 C 1.51664 * 108.47176 * 19.37564 * 23 22 21 26 26 C 1.53040 * 109.53637 * 298.63896 * 12 11 10 27 27 C 1.46934 * 120.62932 * 211.72541 * 9 7 2 28 28 H 0.97003 * 120.00619 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.58862 * 6.62808 * 10 9 7 30 30 H 1.08998 * 109.70599 * 246.26697 * 10 9 7 31 31 H 1.09004 * 109.49768 * 294.68463 * 11 10 9 32 32 H 1.09000 * 109.52538 * 174.60769 * 11 10 9 33 33 H 1.09001 * 109.47593 * 300.76009 * 13 12 11 34 34 H 1.08998 * 109.47785 * 60.75995 * 13 12 11 35 35 H 0.96696 * 114.00151 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00003 * 242.65999 * 15 12 11 37 37 H 1.08994 * 109.46906 * 60.00427 * 18 16 15 38 38 H 1.09002 * 109.46988 * 299.99981 * 18 16 15 39 39 H 1.08993 * 110.02859 * 345.83856 * 21 19 18 40 40 H 1.09007 * 110.02021 * 107.24833 * 21 19 18 41 41 H 1.09001 * 110.70548 * 213.25801 * 25 23 22 42 42 H 1.09003 * 110.70899 * 90.19060 * 25 23 22 43 43 H 1.09004 * 109.50013 * 181.31440 * 26 12 11 44 44 H 1.09004 * 109.49594 * 301.41082 * 26 12 11 45 45 H 1.08992 * 109.58561 * 353.37584 * 27 9 7 46 46 H 1.08998 * 109.58534 * 113.66258 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0753 -1.2108 0.1784 9 7 1.3445 -2.3769 -0.2280 10 6 0.1679 -2.4125 -1.1071 11 6 0.3858 -3.4847 -2.1794 12 6 0.7055 -4.8197 -1.5028 13 6 0.8901 -5.9005 -2.5697 14 8 1.1711 -7.1509 -1.9375 15 7 -0.3984 -5.1935 -0.6151 16 6 -1.6247 -5.4235 -1.1247 17 8 -1.8375 -5.2313 -2.3032 18 6 -2.7315 -5.9194 -0.2302 19 6 -4.0098 -6.0979 -1.0518 20 1 -3.8176 -6.7014 -1.9389 21 6 -4.6150 -4.7323 -1.4373 22 8 -6.0378 -4.8117 -1.1499 23 6 -6.3828 -6.0270 -0.6957 24 8 -7.4989 -6.4899 -0.6914 25 6 -5.1336 -6.7244 -0.1925 26 6 1.9928 -4.6843 -0.6864 27 6 1.7932 -3.6258 0.4028 28 1 -0.4851 0.8400 -0.0004 29 1 0.0379 -1.4407 -1.5833 30 1 -0.7200 -2.6550 -0.5231 31 1 1.2175 -3.1937 -2.8211 32 1 -0.5180 -3.5883 -2.7799 33 1 -0.0224 -5.9886 -3.1595 34 1 1.7196 -5.6289 -3.2225 35 1 1.3004 -7.8836 -2.5551 36 1 -0.2466 -5.2756 0.3394 37 1 -2.9083 -5.1950 0.5647 38 1 -2.4444 -6.8758 0.2069 39 1 -4.1579 -3.9405 -0.8439 40 1 -4.4588 -4.5412 -2.4991 41 1 -5.1964 -7.7990 -0.3643 42 1 -4.9735 -6.5132 0.8648 43 1 2.2326 -5.6417 -0.2237 44 1 2.8094 -4.3820 -1.3422 45 1 2.7355 -3.4544 0.9229 46 1 1.0404 -3.9672 1.1133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755177049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:38 Heat of formation + Delta-G solvation = -170.743368 kcal Electronic energy + Delta-G solvation = -29562.811637 eV Core-core repulsion = 25452.149915 eV Total energy + Delta-G solvation = -4110.661722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.08393 -41.32863 -39.13721 -38.48721 -37.38114 -35.61295 -35.13959 -33.61163 -32.16691 -31.44299 -29.76829 -28.41453 -27.99435 -25.61796 -23.92881 -23.25928 -22.39822 -22.27907 -21.11451 -20.10367 -18.83903 -18.55458 -18.08267 -17.81258 -17.72291 -17.10630 -16.86871 -16.35248 -16.31416 -15.76090 -15.59560 -15.17701 -14.98647 -14.90044 -14.68158 -14.56347 -14.20410 -14.14299 -13.96960 -13.35645 -13.29378 -13.18531 -12.96410 -12.85947 -12.58417 -12.43799 -12.41271 -12.23078 -12.11051 -12.01314 -11.81419 -11.47204 -11.39008 -11.33725 -11.17627 -10.96923 -10.52337 -10.26498 -9.81105 -8.57835 -7.84853 -5.35083 0.96124 1.47390 1.49193 1.55300 1.85274 2.23650 2.32599 2.51831 2.97312 3.26428 3.29673 3.36536 3.61982 3.73574 3.76311 3.89559 4.07152 4.13991 4.31718 4.41212 4.44360 4.53139 4.55926 4.59274 4.66410 4.70786 4.73444 4.81343 4.82794 4.87433 5.02628 5.07976 5.11878 5.21872 5.23778 5.36654 5.52106 5.66272 5.73552 5.78652 5.82486 6.36209 6.43385 6.78840 6.94003 7.19010 7.45508 7.89438 8.41061 9.19898 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003752 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.197619 B = 7461.209847 C = 9123.579485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.608 5.608 10 C 0.197 3.803 11 C -0.139 4.139 12 C 0.196 3.804 13 C 0.076 3.924 14 O -0.573 6.573 15 N -0.700 5.700 16 C 0.510 3.490 17 O -0.574 6.574 18 C -0.125 4.125 19 C -0.092 4.092 20 H 0.107 0.893 21 C 0.061 3.939 22 O -0.376 6.376 23 C 0.481 3.519 24 O -0.504 6.504 25 C -0.165 4.165 26 C -0.118 4.118 27 C 0.142 3.858 28 H 0.248 0.752 29 H 0.041 0.959 30 H 0.002 0.998 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.392 0.608 36 H 0.406 0.594 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -17.799 -0.684 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.791 3.209 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.332 5.332 10 C 0.071 3.929 11 C -0.179 4.179 12 C 0.109 3.891 13 C -0.003 4.003 14 O -0.380 6.380 15 N -0.351 5.351 16 C 0.298 3.702 17 O -0.454 6.454 18 C -0.164 4.164 19 C -0.111 4.111 20 H 0.125 0.875 21 C -0.013 4.013 22 O -0.293 6.293 23 C 0.324 3.676 24 O -0.391 6.391 25 C -0.203 4.203 26 C -0.157 4.157 27 C 0.017 3.983 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.240 0.760 36 H 0.243 0.757 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.156 -17.198 -0.999 17.361 hybrid contribution 0.467 1.231 -0.291 1.349 sum -1.688 -15.967 -1.290 16.107 Atomic orbital electron populations 1.70112 1.06524 1.25682 1.55487 1.25826 0.96057 1.01271 1.00887 0.85426 0.77592 0.79607 0.78287 1.20630 1.22295 1.20008 1.19442 0.91237 0.85342 1.43403 0.91811 1.44235 1.32702 1.04144 1.52091 1.20297 0.87596 0.95557 0.89463 1.22361 1.01234 0.95351 0.98959 1.20100 0.87028 0.91838 0.90138 1.22419 0.99660 0.84081 0.94117 1.86393 1.94247 1.18783 1.38542 1.45885 1.08782 1.69131 1.11293 1.21041 0.83791 0.76496 0.88878 1.90615 1.82726 1.53602 1.18499 1.21738 0.90769 1.05915 0.98002 1.22139 0.93812 0.95308 0.99806 0.87463 1.24170 0.74030 0.99700 1.03378 1.86802 1.30373 1.34483 1.77601 1.23929 0.90704 0.79864 0.73077 1.90682 1.27106 1.66571 1.54734 1.23159 0.89635 1.03729 1.03749 1.22067 0.95495 0.99668 0.98494 1.21057 0.97741 0.86102 0.93427 0.94287 0.94044 0.97982 0.93010 0.91348 0.92622 0.93043 0.75954 0.75744 0.86935 0.84428 0.88656 0.88724 0.84597 0.83772 0.89254 0.91770 0.92739 0.95615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.75 11.10 21.65 0.24 -53.51 16 2 C -0.04 -2.43 5.04 84.86 0.43 -2.00 16 3 Si 0.96 43.99 29.57 68.60 2.03 46.02 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.26 -13.94 9.57 84.03 0.80 -13.14 16 8 H 0.06 3.29 7.85 -2.91 -0.02 3.26 16 9 N -0.61 -28.49 2.98 -699.10 -2.09 -30.57 16 10 C 0.20 9.07 4.99 86.36 0.43 9.50 16 11 C -0.14 -5.15 4.71 30.67 0.14 -5.01 16 12 C 0.20 5.69 0.44 3.63 0.00 5.69 16 13 C 0.08 1.88 5.68 71.98 0.41 2.29 16 14 O -0.57 -11.65 12.84 -148.98 -1.91 -13.56 16 15 N -0.70 -17.59 3.98 -422.81 -1.68 -19.27 16 16 C 0.51 12.03 7.08 87.66 0.62 12.65 16 17 O -0.57 -16.87 11.61 -3.04 -0.04 -16.90 16 18 C -0.12 -1.74 5.00 29.85 0.15 -1.59 16 19 C -0.09 -1.38 2.65 -9.78 -0.03 -1.41 16 20 H 0.11 1.68 7.88 -2.39 -0.02 1.66 16 21 C 0.06 1.30 6.82 72.41 0.49 1.79 16 22 O -0.38 -9.77 10.96 -51.99 -0.57 -10.34 16 23 C 0.48 11.37 8.65 71.54 0.62 11.98 16 24 O -0.50 -15.62 18.00 21.58 0.39 -15.23 16 25 C -0.17 -2.06 6.50 30.74 0.20 -1.86 16 26 C -0.12 -3.47 4.85 30.67 0.15 -3.32 16 27 C 0.14 5.17 6.24 86.36 0.54 5.71 16 28 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.04 2.26 6.15 -2.39 -0.01 2.25 16 30 H 0.00 0.10 7.74 -2.39 -0.02 0.08 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.60 6.23 -2.39 -0.01 2.59 16 33 H 0.06 1.51 6.17 -2.39 -0.01 1.50 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.39 4.57 9.12 -74.06 -0.68 3.89 16 36 H 0.41 9.06 7.20 -92.71 -0.67 8.39 16 37 H 0.11 1.40 7.97 -2.39 -0.02 1.38 16 38 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 2.11 7.67 -2.39 -0.02 2.09 16 40 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.14 1.12 7.91 -2.39 -0.02 1.10 16 43 H 0.09 2.25 7.66 -2.39 -0.02 2.23 16 44 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 46 H 0.03 0.89 6.90 -2.39 -0.02 0.87 16 Total: -1.00 -73.32 362.10 1.01 -72.31 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -0.32 Total: 19.75 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 4.96 Total: 21.30 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.53 Total: -103.35 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -2.13 Total: -56.03 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.32 1.01 -72.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755177049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.434 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds