Wall clock time and date at job start Fri Apr 10 2020 18:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46906 * 2 1 4 4 O 1.42906 * 109.46706 * 240.00148 * 2 1 3 5 5 C 1.52996 * 109.47200 * 120.00154 * 2 1 3 6 6 H 1.09001 * 109.47141 * 300.02769 * 5 2 1 7 7 N 1.46502 * 109.47166 * 60.02573 * 5 2 1 8 8 C 1.34771 * 119.99981 * 274.99793 * 7 5 2 9 9 O 1.21285 * 120.00408 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00288 * 179.97438 * 8 7 5 11 11 C 1.52995 * 117.50122 * 248.75287 * 10 8 7 12 12 C 1.52998 * 117.50241 * 180.08769 * 10 8 7 13 13 C 1.50698 * 109.47104 * 180.02562 * 5 2 1 14 14 O 1.21281 * 120.00013 * 266.26806 * 13 5 2 15 15 N 1.34777 * 120.00252 * 86.26810 * 13 5 2 16 16 C 1.47426 * 125.65278 * 174.82194 * 15 13 5 17 17 C 1.54910 * 104.83265 * 204.16383 * 16 15 13 18 18 C 1.55161 * 101.58157 * 322.99108 * 17 16 15 19 19 O 1.42898 * 110.71820 * 277.13603 * 18 17 16 20 20 C 1.50699 * 110.86950 * 153.93609 * 18 17 16 21 21 H 1.08005 * 120.00090 * 243.94386 * 20 18 17 22 22 C 1.37874 * 120.00039 * 63.95098 * 20 18 17 23 23 N 1.31514 * 120.00102 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00086 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47206 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47350 * 119.99945 * 24 22 20 27 27 H 1.48505 * 109.47368 * 240.00059 * 24 22 20 28 28 C 1.47027 * 125.64232 * 354.86507 * 15 13 5 29 29 H 1.09001 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47041 * 299.99836 * 1 2 3 31 31 H 1.08998 * 109.47712 * 59.99943 * 1 2 3 32 32 H 0.96694 * 114.00214 * 60.00081 * 4 2 1 33 33 H 0.97000 * 119.99939 * 95.00278 * 7 5 2 34 34 H 1.09006 * 115.54910 * 34.41935 * 10 8 7 35 35 H 1.09002 * 117.50379 * 359.97438 * 11 10 8 36 36 H 1.08997 * 117.50255 * 145.01868 * 11 10 8 37 37 H 1.09000 * 117.50160 * 214.97821 * 12 10 8 38 38 H 1.08998 * 117.49793 * 0.02562 * 12 10 8 39 39 H 1.08998 * 110.36636 * 323.00473 * 16 15 13 40 40 H 1.08998 * 110.36614 * 85.32818 * 16 15 13 41 41 H 1.08996 * 111.00399 * 204.91452 * 17 16 15 42 42 H 1.08996 * 111.00253 * 81.06651 * 17 16 15 43 43 H 0.96689 * 114.00666 * 293.52556 * 19 18 17 44 44 H 0.97005 * 119.99997 * 180.02562 * 23 22 20 45 45 H 1.08993 * 109.88344 * 59.48749 * 28 15 13 46 46 H 1.08996 * 109.88316 * 298.32035 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 1 1.6763 -0.2077 2.1392 7 7 1.5522 -2.1027 1.2488 8 6 0.3303 -2.3859 1.7419 9 8 -0.3657 -1.4972 2.1854 10 6 -0.1718 -3.8069 1.7410 11 6 -1.3314 -4.1458 0.8023 12 6 -1.5677 -4.0633 2.3124 13 6 3.5470 -0.7207 1.2495 14 8 4.1538 -1.6622 0.7846 15 7 4.2204 0.3261 1.7663 16 6 5.6832 0.4111 1.9289 17 6 5.8965 1.4379 3.0690 18 6 4.7668 2.4619 2.7814 19 8 5.1744 3.3965 1.7803 20 6 4.3581 3.1787 4.0425 21 1 3.3580 3.0581 4.4323 22 6 5.2607 3.9885 4.6985 23 7 6.4785 4.1351 4.2241 24 14 4.7538 4.8775 6.2613 25 1 3.3416 4.5488 6.5820 26 1 5.6293 4.4480 7.3813 27 1 4.8874 6.3432 6.0626 28 6 3.6177 1.5721 2.2623 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7209 -0.2701 -1.9980 33 1 2.1087 -2.8134 0.8939 34 1 0.5863 -4.5735 1.9016 35 1 -1.7315 -3.3411 0.1855 36 1 -1.3364 -5.1355 0.3456 37 1 -1.7282 -4.9986 2.8485 38 1 -2.1232 -3.2041 2.6886 39 1 6.0905 -0.5596 2.2115 40 1 6.1473 0.7648 1.0083 41 1 6.8775 1.9071 2.9939 42 1 5.7620 0.9716 4.0450 43 1 5.8945 3.9797 2.0565 44 1 7.1136 4.7046 4.6859 45 1 2.9243 1.3511 3.0737 46 1 3.0938 2.0787 1.4518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771753765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:49 Heat of formation + Delta-G solvation = -139.887262 kcal Electronic energy + Delta-G solvation = -29459.878295 eV Core-core repulsion = 25350.554594 eV Total energy + Delta-G solvation = -4109.323701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65150 -39.39595 -37.76830 -36.97846 -36.18255 -34.40971 -34.23568 -32.24597 -31.21258 -29.99133 -28.49315 -27.50248 -25.15912 -24.30974 -22.67537 -22.61394 -21.18627 -20.21915 -19.92081 -19.01006 -17.95671 -17.37738 -17.22622 -16.32065 -16.17295 -15.66824 -15.35976 -15.03245 -14.98318 -14.67518 -14.42425 -14.15772 -13.80453 -13.48299 -13.13667 -12.90058 -12.71971 -12.31821 -12.15586 -12.09759 -11.94682 -11.81741 -11.78996 -11.41516 -11.35927 -11.24026 -10.93255 -10.84455 -10.72630 -10.59114 -10.52505 -10.19456 -10.13510 -9.90364 -9.68600 -9.36845 -9.02411 -8.74097 -8.28147 -8.11257 -6.35619 -4.44143 2.39615 2.74010 2.98519 3.15031 3.24597 3.28493 3.51305 3.69406 4.16109 4.20616 4.49560 4.57149 4.66151 4.68628 4.87027 4.92330 4.96929 5.19524 5.22632 5.34637 5.38108 5.53189 5.55943 5.70511 5.74426 5.76576 5.85847 5.88904 5.90310 5.98717 6.19900 6.21955 6.26741 6.34890 6.51161 6.84663 6.88487 7.24556 7.29158 7.50364 7.60703 7.66620 7.88204 7.98100 8.18515 8.45031 8.58327 9.23976 9.34296 10.71848 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.003413 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.102622 B = 8200.963748 C = 8866.098078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.070 0.930 4 O -0.554 6.554 5 C 0.141 3.859 6 H 0.121 0.879 7 N -0.697 5.697 8 C 0.544 3.456 9 O -0.539 6.539 10 C -0.192 4.192 11 C -0.152 4.152 12 C -0.147 4.147 13 C 0.528 3.472 14 O -0.544 6.544 15 N -0.604 5.604 16 C 0.106 3.894 17 C -0.136 4.136 18 C 0.250 3.750 19 O -0.587 6.587 20 C -0.538 4.538 21 H 0.066 0.934 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.903 3.097 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.108 3.892 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.375 0.625 33 H 0.412 0.588 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.386 0.614 44 H 0.269 0.731 45 H 0.074 0.926 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.645 -11.529 -6.578 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.036 3.964 3 H 0.088 0.912 4 O -0.359 6.359 5 C 0.032 3.968 6 H 0.138 0.862 7 N -0.350 5.350 8 C 0.331 3.669 9 O -0.417 6.417 10 C -0.213 4.213 11 C -0.190 4.190 12 C -0.185 4.185 13 C 0.315 3.685 14 O -0.422 6.422 15 N -0.337 5.337 16 C -0.016 4.016 17 C -0.175 4.175 18 C 0.210 3.790 19 O -0.396 6.396 20 C -0.576 4.576 21 H 0.084 0.916 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.730 3.270 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.015 4.015 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.222 0.778 33 H 0.249 0.751 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.238 0.762 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.862 -12.033 -6.382 17.422 hybrid contribution 0.430 0.912 0.645 1.197 sum -10.431 -11.121 -5.737 16.291 Atomic orbital electron populations 1.22523 0.94896 1.03089 1.02612 1.22085 0.93905 0.95213 0.85238 0.91197 1.86609 1.76862 1.57058 1.15403 1.20876 0.92013 0.84659 0.99277 0.86182 1.45535 1.17782 1.08988 1.62673 1.19591 0.80943 0.89589 0.76777 1.90708 1.56350 1.47936 1.46698 1.22156 0.94025 0.95571 1.09580 1.22936 0.99233 1.03275 0.93534 1.22967 0.95717 1.03871 0.95899 1.19789 0.88612 0.82112 0.77996 1.90635 1.69710 1.35544 1.46271 1.48583 1.08875 1.16414 1.59813 1.22392 0.79409 0.99884 0.99867 1.23329 1.02488 0.96056 0.95628 1.19390 0.87838 0.85697 0.86098 1.86081 1.58741 1.51743 1.43081 1.21552 0.99269 1.28612 1.08203 0.91588 1.24996 0.94560 0.95678 0.97785 1.69649 1.04559 1.38667 1.40514 0.86355 0.78927 0.79350 0.82324 1.19535 1.20790 1.20725 1.22317 0.97674 0.83355 0.98114 0.91867 0.90427 0.92758 0.77783 0.75065 0.85808 0.88302 0.87834 0.87974 0.87309 0.91918 0.91981 0.89369 0.91476 0.76228 0.92105 0.90753 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 8.06 37.16 0.30 -1.87 16 2 C 0.10 1.34 3.38 -26.73 -0.09 1.25 16 3 H 0.07 0.99 7.23 -51.93 -0.38 0.62 16 4 O -0.55 -7.63 12.80 -35.23 -0.45 -8.08 16 5 C 0.14 2.21 1.98 -69.08 -0.14 2.07 16 6 H 0.12 1.95 6.66 -51.93 -0.35 1.60 16 7 N -0.70 -9.78 4.81 -54.93 -0.26 -10.05 16 8 C 0.54 7.28 5.97 -10.99 -0.07 7.21 16 9 O -0.54 -8.54 13.38 5.55 0.07 -8.47 16 10 C -0.19 -1.91 6.19 -91.77 -0.57 -2.48 16 11 C -0.15 -1.24 10.24 -26.69 -0.27 -1.51 16 12 C -0.15 -1.28 10.05 -26.69 -0.27 -1.55 16 13 C 0.53 9.83 6.69 -10.99 -0.07 9.76 16 14 O -0.54 -11.21 16.32 5.56 0.09 -11.12 16 15 N -0.60 -11.76 3.33 -170.52 -0.57 -12.33 16 16 C 0.11 2.11 6.88 -2.53 -0.02 2.10 16 17 C -0.14 -2.95 5.58 -24.58 -0.14 -3.09 16 18 C 0.25 5.75 0.85 -89.93 -0.08 5.67 16 19 O -0.59 -14.15 13.09 -35.23 -0.46 -14.61 16 20 C -0.54 -13.41 8.22 -34.44 -0.28 -13.69 16 21 H 0.07 1.63 7.55 -52.48 -0.40 1.24 16 22 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16 23 N -0.89 -22.39 10.68 55.43 0.59 -21.80 16 24 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.11 2.16 5.66 -3.06 -0.02 2.14 16 29 H 0.06 0.83 5.77 -51.93 -0.30 0.53 16 30 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.38 3.51 9.08 45.56 0.41 3.92 16 33 H 0.41 5.67 7.80 -40.82 -0.32 5.36 16 34 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 1.10 7.67 -51.93 -0.40 0.70 16 39 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.99 7.66 -51.93 -0.40 1.59 16 42 H 0.07 1.48 8.04 -51.93 -0.42 1.07 16 43 H 0.39 9.49 7.17 45.56 0.33 9.81 16 44 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 45 H 0.07 1.44 7.18 -51.93 -0.37 1.07 16 46 H 0.06 1.23 7.15 -51.93 -0.37 0.86 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -29.40 372.03 -7.64 -37.04 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -5.44 Total: 21.42 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.80 Total: 7.73 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.24 Total: -44.17 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.75 Total: -42.28 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.40 -7.64 -37.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771753765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.845 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds