Wall clock time and date at job start Fri Apr 10 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46906 * 2 1 4 4 O 1.42906 * 109.46706 * 240.00148 * 2 1 3 5 5 C 1.52996 * 109.47200 * 120.00154 * 2 1 3 6 6 H 1.09001 * 109.47141 * 300.02769 * 5 2 1 7 7 N 1.46502 * 109.47166 * 60.02573 * 5 2 1 8 8 C 1.34771 * 119.99981 * 274.99793 * 7 5 2 9 9 O 1.21285 * 120.00408 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00288 * 179.97438 * 8 7 5 11 11 C 1.52995 * 117.50122 * 248.75287 * 10 8 7 12 12 C 1.52998 * 117.50241 * 180.08769 * 10 8 7 13 13 C 1.50698 * 109.47104 * 180.02562 * 5 2 1 14 14 O 1.21281 * 120.00013 * 266.26806 * 13 5 2 15 15 N 1.34777 * 120.00252 * 86.26810 * 13 5 2 16 16 C 1.47426 * 125.65278 * 174.82194 * 15 13 5 17 17 C 1.54910 * 104.83265 * 204.16383 * 16 15 13 18 18 C 1.55161 * 101.58157 * 322.99108 * 17 16 15 19 19 O 1.42898 * 110.71820 * 277.13603 * 18 17 16 20 20 C 1.50699 * 110.86950 * 153.93609 * 18 17 16 21 21 H 1.08005 * 120.00090 * 243.94386 * 20 18 17 22 22 C 1.37874 * 120.00039 * 63.95098 * 20 18 17 23 23 N 1.31514 * 120.00102 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00086 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47206 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47350 * 119.99945 * 24 22 20 27 27 H 1.48505 * 109.47368 * 240.00059 * 24 22 20 28 28 C 1.47027 * 125.64232 * 354.86507 * 15 13 5 29 29 H 1.09001 * 109.47420 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47041 * 299.99836 * 1 2 3 31 31 H 1.08998 * 109.47712 * 59.99943 * 1 2 3 32 32 H 0.96694 * 114.00214 * 60.00081 * 4 2 1 33 33 H 0.97000 * 119.99939 * 95.00278 * 7 5 2 34 34 H 1.09006 * 115.54910 * 34.41935 * 10 8 7 35 35 H 1.09002 * 117.50379 * 359.97438 * 11 10 8 36 36 H 1.08997 * 117.50255 * 145.01868 * 11 10 8 37 37 H 1.09000 * 117.50160 * 214.97821 * 12 10 8 38 38 H 1.08998 * 117.49793 * 0.02562 * 12 10 8 39 39 H 1.08998 * 110.36636 * 323.00473 * 16 15 13 40 40 H 1.08998 * 110.36614 * 85.32818 * 16 15 13 41 41 H 1.08996 * 111.00399 * 204.91452 * 17 16 15 42 42 H 1.08996 * 111.00253 * 81.06651 * 17 16 15 43 43 H 0.96689 * 114.00666 * 293.52556 * 19 18 17 44 44 H 0.97005 * 119.99997 * 180.02562 * 23 22 20 45 45 H 1.08993 * 109.88344 * 59.48749 * 28 15 13 46 46 H 1.08996 * 109.88316 * 298.32035 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 1 1.6763 -0.2077 2.1392 7 7 1.5522 -2.1027 1.2488 8 6 0.3303 -2.3859 1.7419 9 8 -0.3657 -1.4972 2.1854 10 6 -0.1718 -3.8069 1.7410 11 6 -1.3314 -4.1458 0.8023 12 6 -1.5677 -4.0633 2.3124 13 6 3.5470 -0.7207 1.2495 14 8 4.1538 -1.6622 0.7846 15 7 4.2204 0.3261 1.7663 16 6 5.6832 0.4111 1.9289 17 6 5.8965 1.4379 3.0690 18 6 4.7668 2.4619 2.7814 19 8 5.1744 3.3965 1.7803 20 6 4.3581 3.1787 4.0425 21 1 3.3580 3.0581 4.4323 22 6 5.2607 3.9885 4.6985 23 7 6.4785 4.1351 4.2241 24 14 4.7538 4.8775 6.2613 25 1 3.3416 4.5488 6.5820 26 1 5.6293 4.4480 7.3813 27 1 4.8874 6.3432 6.0626 28 6 3.6177 1.5721 2.2623 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7209 -0.2701 -1.9980 33 1 2.1087 -2.8134 0.8939 34 1 0.5863 -4.5735 1.9016 35 1 -1.7315 -3.3411 0.1855 36 1 -1.3364 -5.1355 0.3456 37 1 -1.7282 -4.9986 2.8485 38 1 -2.1232 -3.2041 2.6886 39 1 6.0905 -0.5596 2.2115 40 1 6.1473 0.7648 1.0083 41 1 6.8775 1.9071 2.9939 42 1 5.7620 0.9716 4.0450 43 1 5.8945 3.9797 2.0565 44 1 7.1136 4.7046 4.6859 45 1 2.9243 1.3511 3.0737 46 1 3.0938 2.0787 1.4518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771753765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:48 Heat of formation + Delta-G solvation = -163.536212 kcal Electronic energy + Delta-G solvation = -29460.903790 eV Core-core repulsion = 25350.554594 eV Total energy + Delta-G solvation = -4110.349196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89107 -40.72830 -39.22417 -38.27927 -37.01956 -36.12630 -35.43216 -34.16354 -32.45099 -31.47914 -30.18869 -28.76368 -26.96205 -25.27700 -24.12405 -23.28572 -22.41421 -21.74981 -21.23880 -20.42084 -19.28059 -18.92341 -18.39039 -17.68506 -17.41947 -16.98213 -16.92229 -16.77927 -15.99842 -15.85416 -15.82297 -15.48965 -15.05379 -14.85278 -14.74779 -14.28113 -13.89622 -13.74870 -13.60525 -13.43939 -13.30830 -13.22472 -13.10219 -12.97804 -12.67950 -12.42344 -12.40594 -12.36321 -12.25043 -12.02223 -11.53221 -11.45706 -11.37055 -11.27993 -10.96611 -10.87050 -10.62803 -10.21376 -10.13656 -9.71255 -8.24721 -6.39302 1.29646 1.41785 1.46601 1.47473 1.55862 1.65697 2.22818 2.39783 2.92914 3.00806 3.09725 3.23861 3.65810 3.71399 3.78898 3.85637 4.00984 4.02680 4.06283 4.12808 4.17516 4.20952 4.30288 4.31778 4.54238 4.62158 4.74954 4.78650 4.83473 4.85341 4.92479 5.02917 5.12377 5.15577 5.22265 5.23454 5.27346 5.42613 5.47664 5.76307 6.02214 6.40681 6.44003 6.66121 6.76372 6.92437 7.13628 7.31384 7.40683 8.81503 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.003413 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.102622 B = 8200.963748 C = 8866.098078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 H 0.067 0.933 4 O -0.568 6.568 5 C 0.143 3.857 6 H 0.113 0.887 7 N -0.696 5.696 8 C 0.541 3.459 9 O -0.568 6.568 10 C -0.206 4.206 11 C -0.137 4.137 12 C -0.146 4.146 13 C 0.529 3.471 14 O -0.563 6.563 15 N -0.607 5.607 16 C 0.112 3.888 17 C -0.126 4.126 18 C 0.237 3.763 19 O -0.592 6.592 20 C -0.558 4.558 21 H 0.062 0.938 22 C 0.035 3.965 23 N -0.909 5.909 24 Si 0.959 3.041 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.280 1.280 28 C 0.117 3.883 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.395 0.605 33 H 0.414 0.586 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.382 0.618 44 H 0.271 0.729 45 H 0.080 0.920 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 -12.653 -6.951 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.085 0.915 4 O -0.376 6.376 5 C 0.034 3.966 6 H 0.130 0.870 7 N -0.348 5.348 8 C 0.330 3.670 9 O -0.448 6.448 10 C -0.226 4.226 11 C -0.175 4.175 12 C -0.183 4.183 13 C 0.318 3.682 14 O -0.442 6.442 15 N -0.340 5.340 16 C -0.010 4.010 17 C -0.165 4.165 18 C 0.197 3.803 19 O -0.401 6.401 20 C -0.597 4.597 21 H 0.080 0.920 22 C -0.166 4.166 23 N -0.548 5.548 24 Si 0.785 3.215 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.005 4.005 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.245 0.755 33 H 0.252 0.748 34 H 0.161 0.839 35 H 0.109 0.891 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.232 0.768 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.092 -13.168 -6.779 19.120 hybrid contribution 0.821 1.257 0.729 1.669 sum -11.271 -11.911 -6.050 17.479 Atomic orbital electron populations 1.22399 0.93621 1.02788 1.03153 1.21983 0.94671 0.94562 0.84723 0.91514 1.86563 1.77194 1.57531 1.16299 1.20801 0.89706 0.86042 1.00087 0.86969 1.45560 1.18155 1.08206 1.62898 1.20215 0.80226 0.90871 0.75680 1.90693 1.56954 1.49236 1.47903 1.22227 0.95129 0.93583 1.11703 1.23052 0.97023 1.04296 0.93106 1.23041 0.94274 1.04217 0.96773 1.20268 0.89756 0.81245 0.76980 1.90618 1.70489 1.36077 1.47050 1.48596 1.08607 1.16596 1.60173 1.22266 0.80024 0.99689 0.98992 1.23122 1.01413 0.96103 0.95839 1.19567 0.89159 0.85915 0.85701 1.86073 1.58576 1.51987 1.43495 1.21795 0.99287 1.29382 1.09195 0.91974 1.25617 0.94646 0.96257 1.00116 1.69719 1.05009 1.38842 1.41258 0.85492 0.78442 0.78236 0.79344 1.19522 1.20642 1.20555 1.22150 0.96673 0.83161 0.98504 0.92539 0.91723 0.90312 0.75534 0.74832 0.83922 0.89126 0.85142 0.85551 0.89196 0.91047 0.92162 0.90660 0.92332 0.76781 0.91947 0.90200 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 8.06 71.98 0.58 -3.26 16 2 C 0.10 2.72 3.38 30.59 0.10 2.82 16 3 H 0.07 1.83 7.23 -2.39 -0.02 1.81 16 4 O -0.57 -14.73 12.80 -148.98 -1.91 -16.64 16 5 C 0.14 4.41 1.98 44.24 0.09 4.50 16 6 H 0.11 3.65 6.66 -2.39 -0.02 3.63 16 7 N -0.70 -18.97 4.81 -446.10 -2.15 -21.12 16 8 C 0.54 14.04 5.97 87.66 0.52 14.56 16 9 O -0.57 -17.89 13.38 -3.05 -0.04 -17.93 16 10 C -0.21 -3.70 6.19 -11.54 -0.07 -3.77 16 11 C -0.14 -1.89 10.24 30.62 0.31 -1.58 16 12 C -0.15 -2.26 10.05 30.62 0.31 -1.95 16 13 C 0.53 19.41 6.69 87.66 0.59 20.00 16 14 O -0.56 -22.82 16.32 -3.03 -0.05 -22.87 16 15 N -0.61 -23.42 3.33 -811.79 -2.70 -26.12 16 16 C 0.11 4.45 6.88 86.86 0.60 5.05 16 17 C -0.13 -5.50 5.58 31.99 0.18 -5.32 16 18 C 0.24 10.93 0.85 -10.35 -0.01 10.92 16 19 O -0.59 -28.75 13.09 -148.98 -1.95 -30.70 16 20 C -0.56 -27.89 8.22 25.60 0.21 -27.68 16 21 H 0.06 3.08 7.55 -2.91 -0.02 3.06 16 22 C 0.03 1.73 5.27 84.65 0.45 2.17 16 23 N -0.91 -45.59 10.68 21.45 0.23 -45.36 16 24 Si 0.96 40.12 29.54 68.60 2.03 42.15 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 28 C 0.12 4.69 5.66 86.73 0.49 5.18 16 29 H 0.06 1.42 5.77 -2.39 -0.01 1.40 16 30 H 0.06 1.71 7.53 -2.39 -0.02 1.69 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.39 6.57 9.08 -74.06 -0.67 5.89 16 33 H 0.41 11.00 7.80 -92.71 -0.72 10.28 16 34 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.76 7.67 -2.39 -0.02 1.74 16 39 H 0.07 2.69 8.09 -2.39 -0.02 2.67 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.07 3.46 7.66 -2.39 -0.02 3.44 16 42 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 43 H 0.38 19.01 7.17 -74.06 -0.53 18.48 16 44 H 0.27 12.98 8.31 -92.70 -0.77 12.21 16 45 H 0.08 3.09 7.18 -2.39 -0.02 3.07 16 46 H 0.07 2.69 7.15 -2.39 -0.02 2.68 16 Total: -1.00 -61.90 372.03 -3.08 -64.98 By element: Atomic # 1 Polarization: 52.85 SS G_CDS: -0.89 Total: 51.96 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 4.34 Total: 21.64 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -4.62 Total: -92.59 kcal Atomic # 8 Polarization: -84.18 SS G_CDS: -3.95 Total: -88.13 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -61.90 -3.08 -64.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771753765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.558 kcal (2) G-P(sol) polarization free energy of solvation -61.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds