Wall clock time and date at job start Fri Apr 10 2020 18:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99984 * 2 1 4 4 O 1.20827 * 120.00034 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99839 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.46936 * 57.62828 * 5 3 2 7 7 C 1.54092 * 110.51975 * 294.99844 * 5 3 2 8 8 N 1.47099 * 103.77744 * 241.23129 * 7 5 3 9 9 C 1.46503 * 125.55761 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.46716 * 90.00428 * 9 8 7 11 11 C 1.46847 * 110.99759 * 204.99578 * 10 9 8 12 12 C 1.53042 * 109.52590 * 185.83670 * 11 10 9 13 13 C 1.53115 * 109.27440 * 300.82303 * 12 11 10 14 14 C 1.53003 * 109.51825 * 177.55595 * 13 12 11 15 15 C 1.50703 * 109.47202 * 175.12918 * 14 13 12 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00216 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00069 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99806 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 90.00621 * 19 17 15 21 21 H 1.48503 * 109.47399 * 210.00111 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00717 * 19 17 15 23 23 C 1.53119 * 109.21524 * 57.62159 * 13 12 11 24 24 C 1.46850 * 111.00041 * 329.20560 * 10 9 8 25 25 C 1.34002 * 108.87991 * 0.24207 * 8 7 5 26 26 O 1.21504 * 123.07161 * 179.75519 * 25 8 7 27 27 O 1.33770 * 113.85435 * 359.56900 * 25 8 7 28 28 H 1.09006 * 109.47092 * 299.99969 * 1 2 3 29 29 H 1.09002 * 109.46986 * 59.99257 * 1 2 3 30 30 H 1.08993 * 109.47387 * 180.02562 * 1 2 3 31 31 H 1.08995 * 110.56997 * 122.65694 * 7 5 3 32 32 H 1.09004 * 110.69094 * 359.86403 * 7 5 3 33 33 H 1.08994 * 109.47181 * 330.00151 * 9 8 7 34 34 H 1.09000 * 109.46695 * 209.99520 * 9 8 7 35 35 H 1.09007 * 109.46169 * 65.82359 * 11 10 9 36 36 H 1.08993 * 109.45584 * 305.85262 * 11 10 9 37 37 H 1.08990 * 109.50495 * 180.88173 * 12 11 10 38 38 H 1.09005 * 109.49695 * 60.76034 * 12 11 10 39 39 H 1.08995 * 109.52468 * 297.67779 * 13 12 11 40 40 H 1.08999 * 109.47344 * 55.12835 * 14 13 12 41 41 H 1.09001 * 109.47340 * 295.12806 * 14 13 12 42 42 H 0.97000 * 119.99667 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.50445 * 62.31628 * 23 13 12 44 44 H 1.09003 * 109.50553 * 182.42932 * 23 13 12 45 45 H 1.08996 * 109.45929 * 294.18016 * 24 10 9 46 46 H 1.08998 * 109.45950 * 54.15765 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9753 0.7490 -0.8633 7 6 4.1382 0.6938 1.3070 8 7 4.8467 1.8305 1.9151 9 6 5.5712 1.8004 3.1881 10 7 6.9709 1.4260 2.9460 11 6 7.5674 0.8180 4.1422 12 6 9.0593 0.5750 3.9027 13 6 9.2331 -0.3511 2.6959 14 6 10.7239 -0.5490 2.4140 15 6 10.8962 -1.5532 1.3035 16 1 10.0291 -2.0053 0.8450 17 6 12.1607 -1.8955 0.8736 18 7 12.3110 -2.7722 -0.0951 19 14 13.6604 -1.1140 1.6671 20 1 14.0982 -1.9416 2.8198 21 1 14.7597 -1.0300 0.6723 22 1 13.3155 0.2507 2.1402 23 6 8.5610 0.2815 1.4742 24 6 7.0839 0.5344 1.7846 25 6 4.7163 2.8995 1.1177 26 8 5.2004 3.9833 1.3772 27 8 4.0080 2.6633 0.0078 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.8315 -0.1196 1.0936 32 1 3.3353 0.3499 1.9592 33 1 5.1092 1.0698 3.8519 34 1 5.5337 2.7866 3.6508 35 1 7.0739 -0.1311 4.3518 36 1 7.4405 1.4886 4.9920 37 1 9.4984 0.1094 4.7850 38 1 9.5558 1.5254 3.7067 39 1 8.7713 -1.3155 2.9072 40 1 11.2186 -0.9142 3.3140 41 1 11.1667 0.4014 2.1162 42 1 13.2006 -3.0127 -0.3978 43 1 9.0495 1.2271 1.2389 44 1 8.6444 -0.3936 0.6225 45 1 6.5927 -0.4132 2.0052 46 1 6.6060 0.9992 0.9223 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496164527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:36 Heat of formation + Delta-G solvation = -132.326949 kcal Electronic energy + Delta-G solvation = -28746.761627 eV Core-core repulsion = 24637.765766 eV Total energy + Delta-G solvation = -4108.995861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36618 -40.72105 -38.98619 -37.55997 -36.91350 -36.03551 -33.94949 -32.22070 -31.23072 -30.52632 -28.91859 -28.00344 -26.15395 -24.80994 -23.35863 -22.95166 -22.20336 -21.10122 -20.44666 -19.08075 -18.85478 -17.98560 -17.60103 -17.36496 -16.83800 -16.67858 -16.38380 -15.36864 -15.36092 -14.92780 -14.38744 -14.31228 -14.28760 -14.12160 -13.82369 -13.72291 -13.46199 -13.07448 -12.88440 -12.73794 -12.57342 -12.47923 -11.96872 -11.91393 -11.80727 -11.47076 -11.40494 -10.96683 -10.85803 -10.83940 -10.78105 -10.60201 -10.23305 -9.74693 -9.65568 -9.57613 -9.32132 -9.02466 -8.52319 -8.22794 -6.03764 -4.00739 1.40824 1.57481 2.05878 2.51651 3.02181 3.31461 3.39657 3.43185 3.44176 3.87837 3.90807 4.14317 4.38955 4.46638 4.57903 4.66767 4.71107 4.78602 4.99284 5.02700 5.13435 5.24142 5.26965 5.32490 5.49884 5.51101 5.65266 5.66563 5.79509 5.85692 5.95364 6.06499 6.25126 6.43013 6.49477 6.79367 6.86116 6.91672 6.99694 7.04148 7.08203 7.18313 7.28786 7.49036 7.74555 7.81520 8.54499 9.00639 9.59860 11.09569 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002762 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.768988 B =10136.930085 C =10816.507145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.350 6.350 3 C 0.455 3.545 4 O -0.476 6.476 5 C 0.083 3.917 6 H 0.161 0.839 7 C 0.072 3.928 8 N -0.629 5.629 9 C 0.317 3.683 10 N -0.551 5.551 11 C 0.063 3.937 12 C -0.115 4.115 13 C -0.072 4.072 14 C -0.009 4.009 15 C -0.514 4.514 16 H 0.072 0.928 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.265 1.265 23 C -0.101 4.101 24 C 0.057 3.943 25 C 0.649 3.351 26 O -0.496 6.496 27 O -0.297 6.297 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.010 0.990 41 H 0.016 0.984 42 H 0.262 0.738 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.029 0.971 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.455 3.465 4.755 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.295 3.705 4 O -0.361 6.361 5 C 0.025 3.975 6 H 0.178 0.822 7 C -0.051 4.051 8 N -0.378 5.378 9 C 0.108 3.892 10 N -0.279 5.279 11 C -0.065 4.065 12 C -0.152 4.152 13 C -0.091 4.091 14 C -0.047 4.047 15 C -0.552 4.552 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.139 4.139 24 C -0.070 4.070 25 C 0.402 3.598 26 O -0.377 6.377 27 O -0.207 6.207 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.028 0.972 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.113 4.875 4.512 24.048 hybrid contribution 0.187 -0.571 0.438 0.744 sum -22.926 4.303 4.950 23.845 Atomic orbital electron populations 1.23397 0.74962 1.04357 1.03007 1.86474 1.24328 1.31892 1.83967 1.23264 0.91011 0.82357 0.73872 1.90768 1.66250 1.36221 1.42826 1.23111 0.89160 0.82192 1.03031 0.82185 1.22919 0.98573 0.91406 0.92225 1.48152 1.55274 1.10117 1.24297 1.22009 0.84380 1.02704 0.80058 1.62368 1.14986 1.44616 1.05952 1.22095 0.96618 0.96674 0.91099 1.21722 0.93497 1.00841 0.99181 1.21047 0.98658 0.96545 0.92828 1.19611 0.91315 0.97064 0.96663 1.21132 0.93730 1.22961 1.17394 0.91007 1.25028 0.99030 0.94725 0.94778 1.69911 1.22888 1.33249 1.28439 0.86808 0.82806 0.80635 0.79214 1.20444 1.21509 1.18954 1.21571 0.91814 1.01321 0.99206 1.22251 0.99356 0.92881 0.92536 1.18373 0.77886 0.85071 0.78429 1.91094 1.50087 1.23811 1.72720 1.87433 1.65764 1.27521 1.39967 0.91558 0.91415 0.87329 0.86503 0.88213 0.92226 0.87754 0.94867 0.91103 0.91815 0.91387 0.92419 0.97187 0.96522 0.92833 0.91800 0.90273 0.95277 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.56 101.05 1.07 1.23 16 2 O -0.35 -2.34 10.57 -39.27 -0.41 -2.75 16 3 C 0.46 4.02 7.13 36.01 0.26 4.28 16 4 O -0.48 -5.97 16.32 -25.20 -0.41 -6.38 16 5 C 0.08 0.66 4.40 -27.31 -0.12 0.54 16 6 H 0.16 0.76 8.14 -51.93 -0.42 0.33 16 7 C 0.07 0.51 6.47 -3.15 -0.02 0.49 16 8 N -0.63 -6.72 1.81 -182.36 -0.33 -7.05 16 9 C 0.32 3.32 6.45 -63.31 -0.41 2.91 16 10 N -0.55 -7.17 4.91 -238.57 -1.17 -8.34 16 11 C 0.06 0.77 5.29 -3.83 -0.02 0.74 16 12 C -0.11 -1.74 5.38 -26.65 -0.14 -1.88 16 13 C -0.07 -1.33 2.20 -90.50 -0.20 -1.53 16 14 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 15 C -0.51 -14.08 9.00 -34.44 -0.31 -14.39 16 16 H 0.07 2.09 7.31 -52.49 -0.38 1.70 16 17 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.91 -27.51 13.96 55.43 0.77 -26.73 16 19 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 23 C -0.10 -1.78 5.15 -26.65 -0.14 -1.92 16 24 C 0.06 0.78 4.01 -3.83 -0.02 0.76 16 25 C 0.65 9.21 8.56 53.71 0.46 9.67 16 26 O -0.50 -9.03 17.54 -19.11 -0.34 -9.36 16 27 O -0.30 -3.80 10.38 -44.40 -0.46 -4.26 16 28 H 0.07 0.30 8.13 -51.93 -0.42 -0.12 16 29 H 0.07 0.32 8.13 -51.93 -0.42 -0.11 16 30 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.12 0.68 6.08 -51.93 -0.32 0.37 16 32 H 0.10 0.51 7.73 -51.93 -0.40 0.11 16 33 H 0.06 0.47 7.86 -51.93 -0.41 0.06 16 34 H 0.10 1.15 7.92 -51.93 -0.41 0.74 16 35 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 36 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.53 7.04 -51.93 -0.37 1.16 16 45 H 0.03 0.36 7.28 -51.93 -0.38 -0.02 16 46 H 0.06 0.87 5.97 -51.93 -0.31 0.56 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -36.16 368.94 -8.38 -44.54 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -7.13 Total: -4.56 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 0.21 Total: 2.36 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.73 Total: -42.13 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -1.62 Total: -22.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.16 -8.38 -44.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496164527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.785 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds