Wall clock time and date at job start Fri Apr 10 2020 18:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99984 * 2 1 4 4 O 1.20827 * 120.00034 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99839 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.46936 * 57.62828 * 5 3 2 7 7 C 1.54092 * 110.51975 * 294.99844 * 5 3 2 8 8 N 1.47099 * 103.77744 * 241.23129 * 7 5 3 9 9 C 1.46503 * 125.55761 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.46716 * 90.00428 * 9 8 7 11 11 C 1.46847 * 110.99759 * 204.99578 * 10 9 8 12 12 C 1.53042 * 109.52590 * 185.83670 * 11 10 9 13 13 C 1.53115 * 109.27440 * 300.82303 * 12 11 10 14 14 C 1.53003 * 109.51825 * 177.55595 * 13 12 11 15 15 C 1.50703 * 109.47202 * 175.12918 * 14 13 12 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00216 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00069 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99806 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 90.00621 * 19 17 15 21 21 H 1.48503 * 109.47399 * 210.00111 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00717 * 19 17 15 23 23 C 1.53119 * 109.21524 * 57.62159 * 13 12 11 24 24 C 1.46850 * 111.00041 * 329.20560 * 10 9 8 25 25 C 1.34002 * 108.87991 * 0.24207 * 8 7 5 26 26 O 1.21504 * 123.07161 * 179.75519 * 25 8 7 27 27 O 1.33770 * 113.85435 * 359.56900 * 25 8 7 28 28 H 1.09006 * 109.47092 * 299.99969 * 1 2 3 29 29 H 1.09002 * 109.46986 * 59.99257 * 1 2 3 30 30 H 1.08993 * 109.47387 * 180.02562 * 1 2 3 31 31 H 1.08995 * 110.56997 * 122.65694 * 7 5 3 32 32 H 1.09004 * 110.69094 * 359.86403 * 7 5 3 33 33 H 1.08994 * 109.47181 * 330.00151 * 9 8 7 34 34 H 1.09000 * 109.46695 * 209.99520 * 9 8 7 35 35 H 1.09007 * 109.46169 * 65.82359 * 11 10 9 36 36 H 1.08993 * 109.45584 * 305.85262 * 11 10 9 37 37 H 1.08990 * 109.50495 * 180.88173 * 12 11 10 38 38 H 1.09005 * 109.49695 * 60.76034 * 12 11 10 39 39 H 1.08995 * 109.52468 * 297.67779 * 13 12 11 40 40 H 1.08999 * 109.47344 * 55.12835 * 14 13 12 41 41 H 1.09001 * 109.47340 * 295.12806 * 14 13 12 42 42 H 0.97000 * 119.99667 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.50445 * 62.31628 * 23 13 12 44 44 H 1.09003 * 109.50553 * 182.42932 * 23 13 12 45 45 H 1.08996 * 109.45929 * 294.18016 * 24 10 9 46 46 H 1.08998 * 109.45950 * 54.15765 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9753 0.7490 -0.8633 7 6 4.1382 0.6938 1.3070 8 7 4.8467 1.8305 1.9151 9 6 5.5712 1.8004 3.1881 10 7 6.9709 1.4260 2.9460 11 6 7.5674 0.8180 4.1422 12 6 9.0593 0.5750 3.9027 13 6 9.2331 -0.3511 2.6959 14 6 10.7239 -0.5490 2.4140 15 6 10.8962 -1.5532 1.3035 16 1 10.0291 -2.0053 0.8450 17 6 12.1607 -1.8955 0.8736 18 7 12.3110 -2.7722 -0.0951 19 14 13.6604 -1.1140 1.6671 20 1 14.0982 -1.9416 2.8198 21 1 14.7597 -1.0300 0.6723 22 1 13.3155 0.2507 2.1402 23 6 8.5610 0.2815 1.4742 24 6 7.0839 0.5344 1.7846 25 6 4.7163 2.8995 1.1177 26 8 5.2004 3.9833 1.3772 27 8 4.0080 2.6633 0.0078 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.8315 -0.1196 1.0936 32 1 3.3353 0.3499 1.9592 33 1 5.1092 1.0698 3.8519 34 1 5.5337 2.7866 3.6508 35 1 7.0739 -0.1311 4.3518 36 1 7.4405 1.4886 4.9920 37 1 9.4984 0.1094 4.7850 38 1 9.5558 1.5254 3.7067 39 1 8.7713 -1.3155 2.9072 40 1 11.2186 -0.9142 3.3140 41 1 11.1667 0.4014 2.1162 42 1 13.2006 -3.0127 -0.3978 43 1 9.0495 1.2271 1.2389 44 1 8.6444 -0.3936 0.6225 45 1 6.5927 -0.4132 2.0052 46 1 6.6060 0.9992 0.9223 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496164527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:35 Heat of formation + Delta-G solvation = -156.812196 kcal Electronic energy + Delta-G solvation = -28747.823387 eV Core-core repulsion = 24637.765766 eV Total energy + Delta-G solvation = -4110.057621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.20522 -41.43461 -40.09077 -38.56718 -37.66217 -37.14328 -35.37217 -34.00409 -32.06921 -31.67897 -30.38804 -28.56351 -27.30138 -25.59997 -24.82696 -24.10829 -22.96603 -22.29253 -21.63103 -20.43726 -19.54982 -18.85356 -18.77329 -18.32820 -18.22708 -17.47172 -17.25153 -16.38171 -16.30107 -16.24236 -15.77321 -15.38994 -15.22484 -14.98184 -14.86377 -14.83537 -14.44819 -14.32935 -14.02761 -13.91499 -13.62138 -13.39633 -13.15357 -13.04063 -12.90413 -12.71443 -12.63007 -12.28622 -12.03821 -12.00851 -11.92828 -11.87561 -11.63807 -11.59775 -11.20696 -10.94044 -10.81099 -10.68874 -10.39802 -9.14106 -8.24806 -6.25645 0.73416 0.91147 1.24544 1.35270 1.38477 1.49469 1.56070 2.30247 2.38633 2.81568 2.95848 3.11284 3.28010 3.55238 3.79028 3.99365 4.02901 4.08431 4.20659 4.25639 4.28415 4.31639 4.32827 4.42406 4.58410 4.63147 4.65248 4.72758 4.78999 4.84263 4.93296 4.96623 5.09798 5.12952 5.14329 5.28380 5.36938 5.43159 5.55242 5.74878 5.77689 5.99349 6.11938 6.18767 6.36124 6.40474 6.75781 6.81571 7.38214 8.91477 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002762 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.768988 B =10136.930085 C =10816.507145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.341 6.341 3 C 0.463 3.537 4 O -0.520 6.520 5 C 0.079 3.921 6 H 0.195 0.805 7 C 0.074 3.926 8 N -0.622 5.622 9 C 0.317 3.683 10 N -0.573 5.573 11 C 0.069 3.931 12 C -0.110 4.110 13 C -0.068 4.068 14 C -0.009 4.009 15 C -0.514 4.514 16 H 0.041 0.959 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.253 1.253 23 C -0.098 4.098 24 C 0.070 3.930 25 C 0.645 3.355 26 O -0.551 6.551 27 O -0.320 6.320 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.015 0.985 41 H 0.007 0.993 42 H 0.263 0.737 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.736 2.598 6.866 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.257 6.257 3 C 0.305 3.695 4 O -0.408 6.408 5 C 0.022 3.978 6 H 0.211 0.789 7 C -0.047 4.047 8 N -0.370 5.370 9 C 0.109 3.891 10 N -0.302 5.302 11 C -0.058 4.058 12 C -0.148 4.148 13 C -0.087 4.087 14 C -0.046 4.046 15 C -0.552 4.552 16 H 0.059 0.941 17 C -0.193 4.193 18 N -0.594 5.594 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.177 1.177 23 C -0.136 4.136 24 C -0.057 4.057 25 C 0.399 3.601 26 O -0.437 6.437 27 O -0.229 6.229 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.025 0.975 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.427 3.953 6.638 25.620 hybrid contribution 0.481 -0.412 -0.299 0.700 sum -23.946 3.541 6.338 25.023 Atomic orbital electron populations 1.23693 0.73623 1.06356 1.02824 1.86481 1.25571 1.30418 1.83213 1.23425 0.91238 0.82278 0.72562 1.90761 1.67200 1.37744 1.45136 1.23570 0.88826 0.80164 1.05232 0.78875 1.23221 0.99441 0.90269 0.91808 1.48218 1.54659 1.10211 1.23925 1.22106 0.83234 1.03500 0.80247 1.62240 1.17108 1.44800 1.06044 1.22057 0.94112 0.98288 0.91362 1.21645 0.96288 0.99142 0.97726 1.20959 0.95328 0.97594 0.94802 1.19595 0.94972 0.95003 0.95025 1.21473 0.92678 1.23045 1.17976 0.94082 1.25927 1.02467 0.95438 0.95486 1.70055 1.23658 1.35254 1.30389 0.85783 0.78814 0.80298 0.78501 1.19123 1.21457 1.17711 1.21439 0.94953 0.99222 0.98007 1.22033 0.96113 0.94265 0.93333 1.18575 0.77547 0.85173 0.78805 1.91036 1.52418 1.26084 1.74123 1.87379 1.65639 1.30438 1.39483 0.91666 0.91819 0.84190 0.84489 0.85431 0.88100 0.88582 0.92890 0.88649 0.90549 0.92791 0.92474 0.96668 0.97462 0.92787 0.94139 0.93110 0.92910 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 113.37 1.20 1.39 16 2 O -0.34 -3.67 10.57 -51.45 -0.54 -4.21 16 3 C 0.46 7.40 7.13 71.24 0.51 7.91 16 4 O -0.52 -12.85 16.32 28.13 0.46 -12.39 16 5 C 0.08 1.09 4.40 30.22 0.13 1.22 16 6 H 0.19 1.28 8.14 -2.39 -0.02 1.26 16 7 C 0.07 0.78 6.47 86.63 0.56 1.34 16 8 N -0.62 -11.79 1.81 -962.58 -1.74 -13.53 16 9 C 0.32 5.58 6.45 170.81 1.10 6.68 16 10 N -0.57 -13.30 4.91 -908.71 -4.46 -17.76 16 11 C 0.07 1.41 5.29 86.33 0.46 1.87 16 12 C -0.11 -3.07 5.38 30.65 0.16 -2.91 16 13 C -0.07 -2.45 2.20 -10.71 -0.02 -2.47 16 14 C -0.01 -0.39 3.52 29.85 0.11 -0.29 16 15 C -0.51 -28.69 9.00 25.60 0.23 -28.46 16 16 H 0.04 2.48 7.31 -2.91 -0.02 2.46 16 17 C 0.00 0.18 5.47 84.65 0.46 0.64 16 18 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 19 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 23 C -0.10 -3.45 5.15 30.65 0.16 -3.29 16 24 C 0.07 1.75 4.01 86.33 0.35 2.10 16 25 C 0.65 18.06 8.56 129.91 1.11 19.17 16 26 O -0.55 -20.60 17.54 19.67 0.35 -20.26 16 27 O -0.32 -8.07 10.38 -41.02 -0.43 -8.50 16 28 H 0.06 0.49 8.13 -2.38 -0.02 0.47 16 29 H 0.06 0.51 8.13 -2.39 -0.02 0.49 16 30 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.14 0.97 6.08 -2.39 -0.01 0.96 16 32 H 0.13 0.70 7.73 -2.38 -0.02 0.68 16 33 H 0.10 1.02 7.86 -2.39 -0.02 1.00 16 34 H 0.10 1.90 7.92 -2.39 -0.02 1.88 16 35 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.10 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 41 H 0.01 0.34 7.20 -2.39 -0.02 0.32 16 42 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.05 2.02 7.04 -2.39 -0.02 2.01 16 45 H 0.05 1.08 7.28 -2.39 -0.02 1.07 16 46 H 0.07 1.66 5.97 -2.39 -0.01 1.64 16 Total: -1.00 -83.21 368.94 3.25 -79.95 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 0.92 Total: 4.15 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.51 Total: 4.90 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -5.90 Total: -90.21 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -0.17 Total: -45.36 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -83.21 3.25 -79.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496164527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.857 kcal (2) G-P(sol) polarization free energy of solvation -83.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds