Wall clock time and date at job start Fri Apr 10 2020 18:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.46910 * 2 1 4 4 C 1.34640 * 116.99960 * 179.97438 * 3 2 1 5 5 O 1.21511 * 119.99874 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00221 * 179.97438 * 4 3 2 7 7 C 1.46924 * 120.63258 * 180.02562 * 6 4 3 8 8 C 1.53192 * 108.77466 * 233.59283 * 7 6 4 9 9 C 1.53048 * 109.31204 * 305.36040 * 8 7 6 10 10 C 1.50697 * 109.45786 * 181.38500 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.70269 * 10 9 8 12 12 N 1.34784 * 119.99774 * 179.97438 * 10 9 8 13 13 C 1.47066 * 136.05424 * 359.35471 * 12 10 9 14 14 C 1.53243 * 88.08224 * 207.20237 * 13 12 10 15 15 O 1.42905 * 114.01128 * 87.71939 * 14 13 12 16 16 C 1.50696 * 114.32525 * 220.47051 * 14 13 12 17 17 H 1.08004 * 119.99928 * 93.76444 * 16 14 13 18 18 C 1.37875 * 120.00281 * 273.75710 * 16 14 13 19 19 N 1.31515 * 119.99974 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00135 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46905 * 60.00331 * 20 18 16 22 22 H 1.48496 * 109.46969 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47100 * 300.00254 * 20 18 16 24 24 C 1.47060 * 136.05955 * 179.72672 * 12 10 9 25 25 C 1.53043 * 109.52468 * 61.37565 * 9 8 7 26 26 C 1.46927 * 120.62837 * 359.97438 * 6 4 3 27 27 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47375 * 300.00575 * 1 2 3 29 29 H 1.09004 * 109.46978 * 60.00522 * 1 2 3 30 30 H 1.08992 * 109.47243 * 239.99835 * 2 1 3 31 31 H 1.08999 * 109.46824 * 119.99027 * 2 1 3 32 32 H 1.08994 * 109.58714 * 113.80664 * 7 6 4 33 33 H 1.08999 * 109.58306 * 353.37535 * 7 6 4 34 34 H 1.09002 * 109.49761 * 185.41210 * 8 7 6 35 35 H 1.08993 * 109.52742 * 65.33099 * 8 7 6 36 36 H 1.08998 * 109.46056 * 301.36473 * 9 8 7 37 37 H 1.08993 * 113.47056 * 321.94030 * 13 12 10 38 38 H 1.09001 * 113.46576 * 92.37754 * 13 12 10 39 39 H 0.96699 * 114.00114 * 86.39169 * 15 14 13 40 40 H 0.97003 * 120.00132 * 179.97438 * 19 18 16 41 41 H 1.08995 * 113.47148 * 267.62912 * 24 12 10 42 42 H 1.09008 * 113.46765 * 38.06450 * 24 12 10 43 43 H 1.09000 * 109.49830 * 58.57454 * 25 9 8 44 44 H 1.08999 * 109.49472 * 178.67439 * 25 9 8 45 45 H 1.08997 * 109.59010 * 246.19581 * 26 6 4 46 46 H 1.09003 * 109.59077 * 6.47977 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0889 0.5818 0.0005 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9994 0.0001 8 6 5.6840 3.9220 1.1670 9 6 4.8643 5.2108 1.0695 10 6 5.2462 6.1351 2.1968 11 8 6.0866 5.7945 3.0021 12 7 4.6497 7.3382 2.3132 13 6 3.6300 8.0911 1.5674 14 6 4.2781 9.3801 2.0838 15 8 5.3411 9.8662 1.2616 16 6 3.2965 10.4497 2.4879 17 1 2.9774 10.5290 3.5167 18 6 2.8057 11.3272 1.5444 19 7 3.1939 11.2304 0.2916 20 14 1.5895 12.6535 2.0456 21 1 2.2111 13.5350 3.0663 22 1 1.2176 13.4594 0.8551 23 1 0.3725 12.0199 2.6137 24 6 4.7369 8.4783 3.2380 25 6 3.3737 4.8774 1.1662 26 6 2.9817 3.9658 -0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 5.6212 3.4612 -0.9396 33 1 5.8247 2.0415 0.1190 34 1 6.7463 4.1622 1.1217 35 1 5.4642 3.4215 2.1099 36 1 5.0662 5.6983 0.1158 37 1 3.7059 7.9714 0.4868 38 1 2.6172 7.9353 1.9392 39 1 5.0487 10.4340 0.5355 40 1 2.8484 11.8476 -0.3723 41 1 4.0221 8.4268 4.0592 42 1 5.7524 8.6873 3.5748 43 1 3.1754 4.3674 2.1089 44 1 2.7915 5.7977 1.1204 45 1 3.0946 4.5062 -0.9415 46 1 1.9462 3.6455 0.1136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496677659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:39 Heat of formation + Delta-G solvation = -131.592728 kcal Electronic energy + Delta-G solvation = -28667.534461 eV Core-core repulsion = 24558.570438 eV Total energy + Delta-G solvation = -4108.964023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84894 -39.86875 -38.40976 -37.24092 -36.33011 -34.07060 -33.18239 -32.23935 -31.85193 -31.15485 -28.83499 -26.42363 -25.20526 -25.05294 -23.62836 -23.18685 -21.88309 -20.45089 -19.72899 -18.53769 -18.10294 -17.42597 -17.09523 -16.83772 -16.35464 -15.55731 -15.11602 -15.06600 -14.88498 -14.76027 -14.23297 -14.09874 -13.92711 -13.53394 -13.45494 -13.07116 -12.91546 -12.74930 -12.55009 -12.42984 -12.15426 -11.95969 -11.86207 -11.70132 -11.60233 -11.39923 -11.08819 -11.05395 -10.85157 -10.73900 -10.69041 -10.53700 -10.50895 -10.30549 -9.64102 -9.21994 -8.92489 -8.80589 -8.42502 -7.88829 -6.45033 -4.55435 1.95384 2.67062 3.12575 3.14091 3.18954 3.21174 3.50371 3.65592 4.14039 4.60234 4.66397 4.67230 4.72528 4.75358 4.81061 4.92727 5.00564 5.14128 5.17404 5.30307 5.36130 5.48391 5.49929 5.57700 5.59102 5.64602 5.67119 5.75165 5.82836 5.93125 6.03756 6.14861 6.19221 6.27583 6.33508 6.38107 6.44425 6.59803 6.64781 7.06099 7.16392 7.58207 7.75813 8.12233 8.46138 8.50143 8.72753 9.16162 9.44250 10.61510 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.002875 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.321286 B = 9735.179825 C =10841.493400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.652 3.348 5 O -0.578 6.578 6 N -0.592 5.592 7 C 0.127 3.873 8 C -0.113 4.113 9 C -0.100 4.100 10 C 0.539 3.461 11 O -0.564 6.564 12 N -0.633 5.633 13 C 0.073 3.927 14 C 0.240 3.760 15 O -0.572 6.572 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.105 3.895 25 C -0.127 4.127 26 C 0.114 3.886 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.394 0.606 40 H 0.275 0.725 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 -15.287 -4.021 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.406 3.594 5 O -0.467 6.467 6 N -0.333 5.333 7 C 0.006 3.994 8 C -0.151 4.151 9 C -0.122 4.122 10 C 0.329 3.671 11 O -0.444 6.444 12 N -0.366 5.366 13 C -0.051 4.051 14 C 0.198 3.802 15 O -0.385 6.385 16 C -0.572 4.572 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.017 4.017 25 C -0.166 4.166 26 C -0.008 4.008 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.250 0.750 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.512 -16.279 -3.410 17.234 hybrid contribution -1.070 0.985 -0.245 1.475 sum -5.582 -15.294 -3.655 16.686 Atomic orbital electron populations 1.21830 0.92543 1.03012 1.03647 1.22936 0.94812 0.78848 1.02686 1.86236 1.22138 1.33009 1.87008 1.17974 0.81130 0.84030 0.76262 1.90973 1.59835 1.39426 1.56492 1.47006 1.07650 1.03052 1.75589 1.21747 0.77350 1.01367 0.98901 1.21758 1.00737 0.93911 0.98731 1.21205 0.96392 0.95566 0.98997 1.19916 0.81267 0.79879 0.86053 1.90638 1.34402 1.74549 1.44800 1.49705 1.40426 1.14738 1.31690 1.24154 0.91791 0.92300 0.96807 1.19491 0.85073 0.88881 0.86764 1.86051 1.34776 1.70507 1.47157 1.21392 1.24949 1.14795 0.96085 0.91012 1.25071 0.96143 0.97230 0.94557 1.69250 1.44654 1.38327 1.01650 0.86368 0.80838 0.81006 0.78206 1.19835 1.20980 1.19859 1.23326 1.01235 0.82270 0.94858 1.21959 0.94898 1.00602 0.99101 1.21788 0.94368 0.85667 0.98971 0.90065 0.91387 0.91424 0.91265 0.91247 0.90683 0.88323 0.89408 0.90706 0.88430 0.91708 0.90101 0.74981 0.91501 0.89782 0.91635 0.91027 0.89248 0.90579 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.08 0.74 6.19 37.16 0.23 0.97 16 3 O -0.37 -4.33 8.86 -40.32 -0.36 -4.69 16 4 C 0.65 8.86 8.43 54.06 0.46 9.32 16 5 O -0.58 -9.27 15.54 -19.28 -0.30 -9.57 16 6 N -0.59 -7.23 2.97 -178.53 -0.53 -7.76 16 7 C 0.13 1.47 6.43 -3.71 -0.02 1.45 16 8 C -0.11 -1.49 4.65 -26.61 -0.12 -1.62 16 9 C -0.10 -1.44 2.36 -91.73 -0.22 -1.66 16 10 C 0.54 10.36 7.40 -10.98 -0.08 10.28 16 11 O -0.56 -12.58 16.76 5.56 0.09 -12.49 16 12 N -0.63 -12.65 3.64 -185.39 -0.67 -13.32 16 13 C 0.07 1.44 6.14 -8.65 -0.05 1.39 16 14 C 0.24 5.51 1.57 -91.39 -0.14 5.37 16 15 O -0.57 -14.29 13.53 -35.23 -0.48 -14.77 16 16 C -0.53 -12.85 8.69 -34.44 -0.30 -13.15 16 17 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 18 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 19 N -0.90 -21.85 11.01 55.43 0.61 -21.24 16 20 Si 0.91 18.77 29.54 -169.99 -5.02 13.74 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 C 0.11 2.23 8.03 -8.52 -0.07 2.17 16 25 C -0.13 -1.58 5.26 -26.58 -0.14 -1.72 16 26 C 0.11 1.22 6.45 -3.68 -0.02 1.20 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.19 7.00 -51.93 -0.36 0.83 16 34 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 39 H 0.39 9.92 6.33 45.56 0.29 10.21 16 40 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 41 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 42 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.13 6.31 -51.93 -0.33 0.80 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.94 6.93 -51.93 -0.36 0.59 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -29.76 375.04 -7.84 -37.60 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.64 Total: 11.79 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -0.20 Total: 15.04 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.59 Total: -42.32 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.04 Total: -41.51 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.76 -7.84 -37.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496677659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.995 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds