Wall clock time and date at job start Fri Apr 10 2020 18:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.46910 * 2 1 4 4 C 1.34640 * 116.99960 * 179.97438 * 3 2 1 5 5 O 1.21511 * 119.99874 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00221 * 179.97438 * 4 3 2 7 7 C 1.46924 * 120.63258 * 180.02562 * 6 4 3 8 8 C 1.53192 * 108.77466 * 233.59283 * 7 6 4 9 9 C 1.53048 * 109.31204 * 305.36040 * 8 7 6 10 10 C 1.50697 * 109.45786 * 181.38500 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.70269 * 10 9 8 12 12 N 1.34784 * 119.99774 * 179.97438 * 10 9 8 13 13 C 1.47066 * 136.05424 * 359.35471 * 12 10 9 14 14 C 1.53243 * 88.08224 * 207.20237 * 13 12 10 15 15 O 1.42905 * 114.01128 * 87.71939 * 14 13 12 16 16 C 1.50696 * 114.32525 * 220.47051 * 14 13 12 17 17 H 1.08004 * 119.99928 * 93.76444 * 16 14 13 18 18 C 1.37875 * 120.00281 * 273.75710 * 16 14 13 19 19 N 1.31515 * 119.99974 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00135 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46905 * 60.00331 * 20 18 16 22 22 H 1.48496 * 109.46969 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47100 * 300.00254 * 20 18 16 24 24 C 1.47060 * 136.05955 * 179.72672 * 12 10 9 25 25 C 1.53043 * 109.52468 * 61.37565 * 9 8 7 26 26 C 1.46927 * 120.62837 * 359.97438 * 6 4 3 27 27 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47375 * 300.00575 * 1 2 3 29 29 H 1.09004 * 109.46978 * 60.00522 * 1 2 3 30 30 H 1.08992 * 109.47243 * 239.99835 * 2 1 3 31 31 H 1.08999 * 109.46824 * 119.99027 * 2 1 3 32 32 H 1.08994 * 109.58714 * 113.80664 * 7 6 4 33 33 H 1.08999 * 109.58306 * 353.37535 * 7 6 4 34 34 H 1.09002 * 109.49761 * 185.41210 * 8 7 6 35 35 H 1.08993 * 109.52742 * 65.33099 * 8 7 6 36 36 H 1.08998 * 109.46056 * 301.36473 * 9 8 7 37 37 H 1.08993 * 113.47056 * 321.94030 * 13 12 10 38 38 H 1.09001 * 113.46576 * 92.37754 * 13 12 10 39 39 H 0.96699 * 114.00114 * 86.39169 * 15 14 13 40 40 H 0.97003 * 120.00132 * 179.97438 * 19 18 16 41 41 H 1.08995 * 113.47148 * 267.62912 * 24 12 10 42 42 H 1.09008 * 113.46765 * 38.06450 * 24 12 10 43 43 H 1.09000 * 109.49830 * 58.57454 * 25 9 8 44 44 H 1.08999 * 109.49472 * 178.67439 * 25 9 8 45 45 H 1.08997 * 109.59010 * 246.19581 * 26 6 4 46 46 H 1.09003 * 109.59077 * 6.47977 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0889 0.5818 0.0005 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9994 0.0001 8 6 5.6840 3.9220 1.1670 9 6 4.8643 5.2108 1.0695 10 6 5.2462 6.1351 2.1968 11 8 6.0866 5.7945 3.0021 12 7 4.6497 7.3382 2.3132 13 6 3.6300 8.0911 1.5674 14 6 4.2781 9.3801 2.0838 15 8 5.3411 9.8662 1.2616 16 6 3.2965 10.4497 2.4879 17 1 2.9774 10.5290 3.5167 18 6 2.8057 11.3272 1.5444 19 7 3.1939 11.2304 0.2916 20 14 1.5895 12.6535 2.0456 21 1 2.2111 13.5350 3.0663 22 1 1.2176 13.4594 0.8551 23 1 0.3725 12.0199 2.6137 24 6 4.7369 8.4783 3.2380 25 6 3.3737 4.8774 1.1662 26 6 2.9817 3.9658 -0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 5.6212 3.4612 -0.9396 33 1 5.8247 2.0415 0.1190 34 1 6.7463 4.1622 1.1217 35 1 5.4642 3.4215 2.1099 36 1 5.0662 5.6983 0.1158 37 1 3.7059 7.9714 0.4868 38 1 2.6172 7.9353 1.9392 39 1 5.0487 10.4340 0.5355 40 1 2.8484 11.8476 -0.3723 41 1 4.0221 8.4268 4.0592 42 1 5.7524 8.6873 3.5748 43 1 3.1754 4.3674 2.1089 44 1 2.7915 5.7977 1.1204 45 1 3.0946 4.5062 -0.9415 46 1 1.9462 3.6455 0.1136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496677659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:38 Heat of formation + Delta-G solvation = -151.721357 kcal Electronic energy + Delta-G solvation = -28668.407304 eV Core-core repulsion = 24558.570438 eV Total energy + Delta-G solvation = -4109.836866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90833 -41.32871 -39.72350 -38.58660 -37.39954 -35.87796 -34.29713 -34.09416 -32.62607 -32.05085 -30.45319 -27.81525 -26.85145 -26.47448 -24.55615 -24.04612 -22.95403 -21.83164 -20.92698 -19.99777 -19.36635 -19.02310 -18.09995 -17.90117 -17.73878 -17.22725 -16.74868 -16.28142 -15.98550 -15.92066 -15.67622 -15.33058 -15.03236 -14.82698 -14.51496 -14.34435 -14.13005 -14.02500 -13.67096 -13.60645 -13.40210 -13.34820 -13.02413 -12.87578 -12.75535 -12.70172 -12.51140 -12.37225 -12.20688 -12.13984 -11.95938 -11.75576 -11.57563 -11.52390 -11.32458 -10.87204 -10.60677 -10.20022 -9.88339 -9.56024 -8.25085 -6.41545 1.06045 1.50286 1.53084 1.59375 1.61295 1.66433 1.98134 2.42917 2.79633 2.97067 3.37444 3.60833 3.66796 3.79107 3.94346 4.03743 4.09649 4.12513 4.19729 4.24130 4.28427 4.36954 4.46399 4.57224 4.61695 4.63164 4.66751 4.74455 4.76362 4.82385 4.90248 4.94627 4.96738 4.99135 5.04941 5.14435 5.21636 5.27970 5.36954 5.40222 5.75488 5.94099 6.19205 6.63597 6.91584 7.13126 7.15188 7.32417 7.52469 8.80622 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.002875 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.321286 B = 9735.179825 C =10841.493400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 O -0.370 6.370 4 C 0.648 3.352 5 O -0.608 6.608 6 N -0.592 5.592 7 C 0.133 3.867 8 C -0.105 4.105 9 C -0.092 4.092 10 C 0.532 3.468 11 O -0.600 6.600 12 N -0.634 5.634 13 C 0.092 3.908 14 C 0.217 3.783 15 O -0.587 6.587 16 C -0.553 4.553 17 H 0.072 0.928 18 C 0.035 3.965 19 N -0.915 5.915 20 Si 0.967 3.033 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.266 1.266 24 C 0.103 3.897 25 C -0.119 4.119 26 C 0.120 3.880 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.390 0.610 40 H 0.277 0.723 41 H 0.101 0.899 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -15.650 -5.010 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 O -0.284 6.284 4 C 0.403 3.597 5 O -0.500 6.500 6 N -0.332 5.332 7 C 0.012 3.988 8 C -0.143 4.143 9 C -0.113 4.113 10 C 0.324 3.676 11 O -0.483 6.483 12 N -0.366 5.366 13 C -0.031 4.031 14 C 0.176 3.824 15 O -0.400 6.400 16 C -0.591 4.591 17 H 0.090 0.910 18 C -0.165 4.165 19 N -0.555 5.555 20 Si 0.792 3.208 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.191 1.191 24 C -0.020 4.020 25 C -0.158 4.158 26 C -0.002 4.002 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.423 -16.643 -4.404 18.375 hybrid contribution -0.440 1.101 0.116 1.191 sum -6.862 -15.542 -4.288 17.522 Atomic orbital electron populations 1.21841 0.90155 1.04498 1.03736 1.23228 0.96603 0.77716 1.02533 1.86251 1.20928 1.34558 1.86641 1.18157 0.81572 0.84038 0.75952 1.90949 1.60656 1.40478 1.57946 1.47119 1.08019 1.03137 1.74963 1.21725 0.77238 1.00735 0.99058 1.21667 1.00436 0.93533 0.98691 1.21246 0.97921 0.94810 0.97354 1.20825 0.80288 0.79822 0.86697 1.90618 1.35922 1.75216 1.46502 1.49758 1.40608 1.14875 1.31355 1.23921 0.92059 0.90141 0.96974 1.19775 0.85098 0.89940 0.87572 1.86037 1.36032 1.70661 1.47318 1.21608 1.25414 1.15732 0.96298 0.90980 1.25705 0.97494 0.98780 0.94565 1.69304 1.45185 1.38854 1.02198 0.85460 0.79085 0.78596 0.77610 1.20344 1.20837 1.19086 1.23339 1.00658 0.82855 0.95183 1.21901 0.93239 1.01027 0.99607 1.21868 0.94625 0.84771 0.98924 0.87882 0.91469 0.91069 0.91203 0.91734 0.88210 0.88914 0.89725 0.92635 0.86887 0.91207 0.88564 0.75449 0.91326 0.88135 0.93357 0.92060 0.88990 0.88476 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 71.98 0.74 -0.75 16 2 C 0.07 1.23 6.19 71.98 0.45 1.67 16 3 O -0.37 -8.09 8.86 -55.49 -0.49 -8.58 16 4 C 0.65 16.81 8.43 129.79 1.09 17.91 16 5 O -0.61 -19.20 15.54 19.81 0.31 -18.89 16 6 N -0.59 -13.31 2.97 -949.14 -2.82 -16.13 16 7 C 0.13 2.86 6.43 86.36 0.56 3.41 16 8 C -0.10 -2.68 4.65 30.67 0.14 -2.54 16 9 C -0.09 -2.52 2.36 -11.51 -0.03 -2.55 16 10 C 0.53 20.20 7.40 87.65 0.65 20.84 16 11 O -0.60 -27.06 16.76 -3.04 -0.05 -27.11 16 12 N -0.63 -24.91 3.64 -859.33 -3.13 -28.04 16 13 C 0.09 3.51 6.14 83.09 0.51 4.02 16 14 C 0.22 9.92 1.57 -11.29 -0.02 9.90 16 15 O -0.59 -29.54 13.53 -148.98 -2.02 -31.55 16 16 C -0.55 -26.23 8.69 25.60 0.22 -26.01 16 17 H 0.07 3.33 7.81 -2.91 -0.02 3.30 16 18 C 0.04 1.65 5.40 84.65 0.46 2.11 16 19 N -0.91 -43.78 11.01 21.45 0.24 -43.54 16 20 Si 0.97 37.59 29.54 68.60 2.03 39.62 16 21 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 24 C 0.10 4.35 8.03 83.17 0.67 5.01 16 25 C -0.12 -2.73 5.26 30.69 0.16 -2.57 16 26 C 0.12 2.22 6.45 86.38 0.56 2.78 16 27 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 2.15 7.00 -2.39 -0.02 2.14 16 34 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 35 H 0.05 1.64 8.12 -2.39 -0.02 1.62 16 36 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.10 3.40 8.03 -2.39 -0.02 3.38 16 39 H 0.39 19.78 6.33 -74.06 -0.47 19.31 16 40 H 0.28 12.60 8.31 -92.71 -0.77 11.83 16 41 H 0.10 3.87 8.10 -2.39 -0.02 3.85 16 42 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.09 2.09 6.31 -2.39 -0.02 2.08 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.11 1.80 6.93 -2.39 -0.02 1.78 16 Total: -1.00 -63.51 375.04 0.74 -62.76 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: 0.52 Total: 38.22 kcal Atomic # 6 Polarization: 27.08 SS G_CDS: 6.16 Total: 33.24 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -5.71 Total: -87.71 kcal Atomic # 8 Polarization: -83.88 SS G_CDS: -2.25 Total: -86.13 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -63.51 0.74 -62.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496677659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.960 kcal (2) G-P(sol) polarization free energy of solvation -63.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds