Wall clock time and date at job start Fri Apr 10 2020 18:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99771 * 2 1 4 4 O 1.20822 * 120.00575 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99587 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47361 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.56259 * 55.23493 * 6 5 3 8 8 C 1.50430 * 109.57153 * 175.59161 * 6 5 3 9 9 O 1.21281 * 118.48976 * 287.12016 * 8 6 5 10 10 N 1.33386 * 123.02325 * 107.13742 * 8 6 5 11 11 C 1.45751 * 124.60794 * 4.26474 * 10 8 6 12 12 C 1.52989 * 110.72389 * 338.16545 * 11 10 8 13 13 N 1.47050 * 109.56744 * 295.00346 * 6 5 3 14 14 C 1.34779 * 121.35766 * 102.88902 * 13 6 5 15 15 O 1.21289 * 119.99398 * 0.02562 * 14 13 6 16 16 C 1.50696 * 120.00220 * 180.02562 * 14 13 6 17 17 C 1.53003 * 109.46961 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46734 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46734 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.46961 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00182 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00290 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99585 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00308 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47120 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47039 * 120.00247 * 24 22 20 27 27 H 1.48499 * 109.47003 * 239.99851 * 24 22 20 28 28 H 1.08992 * 109.47012 * 300.00508 * 1 2 3 29 29 H 1.09005 * 109.47002 * 60.00309 * 1 2 3 30 30 H 1.08999 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47316 * 60.00145 * 5 3 2 32 32 H 1.09002 * 109.47225 * 300.00177 * 5 3 2 33 33 H 0.96999 * 117.70793 * 184.30042 * 10 8 6 34 34 H 1.08997 * 109.28522 * 217.81939 * 11 10 8 35 35 H 1.09004 * 109.19745 * 98.45658 * 11 10 8 36 36 H 1.09002 * 109.71963 * 286.99834 * 12 11 10 37 37 H 1.09004 * 109.71824 * 166.38874 * 12 11 10 38 38 H 1.08997 * 109.47031 * 299.99528 * 16 14 13 39 39 H 1.08994 * 109.47212 * 59.99859 * 16 14 13 40 40 H 1.08997 * 109.46867 * 299.99634 * 17 16 14 41 41 H 1.08994 * 109.47268 * 59.99899 * 17 16 14 42 42 H 1.08997 * 109.47274 * 299.99544 * 18 17 16 43 43 H 1.08994 * 109.47123 * 60.00566 * 18 17 16 44 44 H 1.09006 * 109.47123 * 299.99844 * 19 18 17 45 45 H 1.08994 * 109.47268 * 60.00058 * 19 18 17 46 46 H 0.97000 * 120.00312 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0003 2.7420 -0.0002 7 1 3.5418 3.2587 0.8430 8 6 5.4983 2.8245 0.1093 9 8 6.0155 2.5659 1.1754 10 7 6.2839 3.1694 -0.9120 11 6 5.8022 3.5919 -2.2211 12 6 4.3764 3.0915 -2.4606 13 7 3.5789 3.3796 -1.2565 14 6 2.5061 4.1941 -1.3043 15 8 1.8667 4.4143 -0.2974 16 6 2.1010 4.8310 -2.6086 17 6 0.8616 5.7006 -2.3882 18 6 0.4507 6.3477 -3.7124 19 6 -0.7884 7.2178 -3.4919 20 6 -1.1934 7.8547 -4.7962 21 1 -0.6239 7.6589 -5.6926 22 6 -2.2906 8.6884 -4.8450 23 7 -2.9839 8.9272 -3.7532 24 14 -2.7923 9.4784 -6.4616 25 1 -1.8555 9.0527 -7.5324 26 1 -4.1716 9.0547 -6.8126 27 1 -2.7483 10.9564 -6.3249 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 7.2435 3.1363 -0.7740 34 1 6.4580 3.1895 -2.9931 35 1 5.8139 4.6806 -2.2731 36 1 4.3896 2.0173 -2.6447 37 1 3.9453 3.6065 -3.3192 38 1 2.9179 5.4496 -2.9799 39 1 1.8738 4.0532 -3.3376 40 1 0.0448 5.0815 -2.0171 41 1 1.0883 6.4783 -1.6591 42 1 1.2676 6.9668 -4.0831 43 1 0.2240 5.5702 -4.4418 44 1 -1.6055 6.5991 -3.1209 45 1 -0.5613 7.9953 -2.7626 46 1 -3.7556 9.5140 -3.7874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589832507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:07 Heat of formation + Delta-G solvation = -161.059423 kcal Electronic energy + Delta-G solvation = -28581.886578 eV Core-core repulsion = 24471.644784 eV Total energy + Delta-G solvation = -4110.241795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46072 -40.25186 -39.21469 -36.87890 -36.63886 -34.99748 -34.60363 -32.83035 -32.18634 -29.67303 -29.55849 -27.97548 -26.19682 -25.12288 -24.25906 -22.43699 -21.30123 -20.25902 -19.92556 -18.88674 -18.10216 -17.72659 -17.27463 -16.99840 -16.50738 -16.34717 -16.09186 -16.01490 -15.53496 -15.10138 -14.49114 -14.41331 -14.32825 -14.09609 -13.64623 -13.55042 -13.09845 -12.89215 -12.61752 -12.56426 -12.26936 -12.20941 -12.17462 -11.84421 -11.61942 -11.56961 -10.99526 -10.91803 -10.74035 -10.53184 -10.48972 -10.41387 -10.37612 -9.67096 -9.62284 -9.60400 -9.20750 -8.97156 -8.93898 -8.30280 -5.94729 -3.97294 1.96804 2.08369 2.39339 2.54527 2.79532 2.89759 3.32926 3.40097 3.43736 3.93424 4.14674 4.24736 4.44611 4.49149 4.52956 4.66091 4.76385 4.81510 4.96127 4.97094 5.05077 5.06256 5.25726 5.29819 5.33987 5.36598 5.40049 5.40793 5.81373 5.95905 6.14852 6.23737 6.26382 6.32236 6.55961 6.73812 6.85733 7.03359 7.17504 7.24368 7.61179 7.66282 7.75264 7.91372 8.07027 8.31232 8.48483 9.10780 9.66303 11.16614 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.002696 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.840156 B =10382.128573 C =11627.158459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.366 6.366 3 C 0.445 3.555 4 O -0.459 6.459 5 C -0.115 4.115 6 C 0.144 3.856 7 H 0.138 0.862 8 C 0.523 3.477 9 O -0.541 6.541 10 N -0.714 5.714 11 C 0.093 3.907 12 C 0.089 3.911 13 N -0.628 5.628 14 C 0.519 3.481 15 O -0.487 6.487 16 C -0.134 4.134 17 C -0.103 4.103 18 C -0.109 4.109 19 C 0.020 3.980 20 C -0.519 4.519 21 H 0.054 0.946 22 C 0.055 3.945 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.592 -20.137 3.360 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.284 6.284 3 C 0.286 3.714 4 O -0.343 6.343 5 C -0.154 4.154 6 C 0.037 3.963 7 H 0.156 0.844 8 C 0.308 3.692 9 O -0.417 6.417 10 N -0.367 5.367 11 C -0.032 4.032 12 C -0.035 4.035 13 N -0.367 5.367 14 C 0.307 3.693 15 O -0.357 6.357 16 C -0.173 4.173 17 C -0.141 4.141 18 C -0.147 4.147 19 C -0.017 4.017 20 C -0.558 4.558 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.534 5.534 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.238 0.762 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.804 -19.678 4.510 27.589 hybrid contribution -0.092 0.442 -1.033 1.127 sum 18.712 -19.236 3.477 27.060 Atomic orbital electron populations 1.23256 0.75893 1.03462 1.02976 1.86445 1.23712 1.33517 1.84685 1.23382 0.91656 0.82038 0.74374 1.90995 1.66473 1.34868 1.41952 1.21536 0.89765 0.97256 1.06876 1.20961 0.90297 0.93414 0.91641 0.84417 1.20026 0.89289 0.76266 0.83592 1.90811 1.74600 1.49750 1.26568 1.45348 1.10539 1.68094 1.12685 1.21862 0.96067 1.00947 0.84366 1.22093 0.90033 1.02031 0.89308 1.48412 1.30931 1.49469 1.07922 1.20989 0.78507 0.77724 0.92044 1.90748 1.50212 1.58222 1.36497 1.21794 1.01132 1.00286 0.94131 1.21455 0.94875 0.98237 0.99502 1.21640 1.00041 0.98668 0.94313 1.19095 0.91580 0.94233 0.96837 1.21317 1.11760 1.27520 0.95178 0.92727 1.25050 0.96580 0.96742 0.96241 1.69988 1.18817 1.37374 1.27238 0.86563 0.78379 0.79132 0.84066 1.19783 1.21067 1.21063 0.91756 0.91708 0.88240 0.87387 0.85934 0.76180 0.88891 0.90626 0.90381 0.86945 0.89342 0.89442 0.91702 0.91837 0.93538 0.93576 0.96618 0.96595 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.37 -3.83 10.57 -39.26 -0.41 -4.25 16 3 C 0.45 5.16 7.82 36.01 0.28 5.44 16 4 O -0.46 -7.16 11.41 -26.78 -0.31 -7.47 16 5 C -0.12 -0.97 5.38 -27.88 -0.15 -1.12 16 6 C 0.14 1.50 2.26 -68.91 -0.16 1.34 16 7 H 0.14 1.85 7.05 -51.93 -0.37 1.48 16 8 C 0.52 5.12 7.10 -11.73 -0.08 5.03 16 9 O -0.54 -7.11 17.80 5.56 0.10 -7.01 16 10 N -0.71 -4.52 5.43 -61.25 -0.33 -4.85 16 11 C 0.09 0.37 7.34 -4.45 -0.03 0.33 16 12 C 0.09 0.48 6.31 -3.63 -0.02 0.45 16 13 N -0.63 -6.28 2.39 -166.54 -0.40 -6.68 16 14 C 0.52 7.27 6.54 -10.99 -0.07 7.20 16 15 O -0.49 -9.07 12.92 -18.73 -0.24 -9.32 16 16 C -0.13 -1.73 4.07 -27.88 -0.11 -1.84 16 17 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 18 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 19 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 20 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 21 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 24 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 0.64 7.35 -51.93 -0.38 0.26 16 32 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 2.01 8.80 -40.82 -0.36 1.66 16 34 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.30 7.40 -51.93 -0.38 -0.09 16 37 H 0.11 0.48 6.03 -51.93 -0.31 0.17 16 38 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 39 H 0.09 0.97 7.83 -51.93 -0.41 0.57 16 40 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -38.85 377.23 -7.51 -46.37 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -7.23 Total: -2.97 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.09 Total: 0.53 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.01 Total: -38.40 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.86 Total: -28.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.85 -7.51 -46.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589832507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.694 kcal (2) G-P(sol) polarization free energy of solvation -38.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds