Wall clock time and date at job start Fri Apr 10 2020 18:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99771 * 2 1 4 4 O 1.20822 * 120.00575 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99587 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47361 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.56259 * 55.23493 * 6 5 3 8 8 C 1.50430 * 109.57153 * 175.59161 * 6 5 3 9 9 O 1.21281 * 118.48976 * 287.12016 * 8 6 5 10 10 N 1.33386 * 123.02325 * 107.13742 * 8 6 5 11 11 C 1.45751 * 124.60794 * 4.26474 * 10 8 6 12 12 C 1.52989 * 110.72389 * 338.16545 * 11 10 8 13 13 N 1.47050 * 109.56744 * 295.00346 * 6 5 3 14 14 C 1.34779 * 121.35766 * 102.88902 * 13 6 5 15 15 O 1.21289 * 119.99398 * 0.02562 * 14 13 6 16 16 C 1.50696 * 120.00220 * 180.02562 * 14 13 6 17 17 C 1.53003 * 109.46961 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46734 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46734 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.46961 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00182 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00290 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99585 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00308 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47120 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47039 * 120.00247 * 24 22 20 27 27 H 1.48499 * 109.47003 * 239.99851 * 24 22 20 28 28 H 1.08992 * 109.47012 * 300.00508 * 1 2 3 29 29 H 1.09005 * 109.47002 * 60.00309 * 1 2 3 30 30 H 1.08999 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47316 * 60.00145 * 5 3 2 32 32 H 1.09002 * 109.47225 * 300.00177 * 5 3 2 33 33 H 0.96999 * 117.70793 * 184.30042 * 10 8 6 34 34 H 1.08997 * 109.28522 * 217.81939 * 11 10 8 35 35 H 1.09004 * 109.19745 * 98.45658 * 11 10 8 36 36 H 1.09002 * 109.71963 * 286.99834 * 12 11 10 37 37 H 1.09004 * 109.71824 * 166.38874 * 12 11 10 38 38 H 1.08997 * 109.47031 * 299.99528 * 16 14 13 39 39 H 1.08994 * 109.47212 * 59.99859 * 16 14 13 40 40 H 1.08997 * 109.46867 * 299.99634 * 17 16 14 41 41 H 1.08994 * 109.47268 * 59.99899 * 17 16 14 42 42 H 1.08997 * 109.47274 * 299.99544 * 18 17 16 43 43 H 1.08994 * 109.47123 * 60.00566 * 18 17 16 44 44 H 1.09006 * 109.47123 * 299.99844 * 19 18 17 45 45 H 1.08994 * 109.47268 * 60.00058 * 19 18 17 46 46 H 0.97000 * 120.00312 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0003 2.7420 -0.0002 7 1 3.5418 3.2587 0.8430 8 6 5.4983 2.8245 0.1093 9 8 6.0155 2.5659 1.1754 10 7 6.2839 3.1694 -0.9120 11 6 5.8022 3.5919 -2.2211 12 6 4.3764 3.0915 -2.4606 13 7 3.5789 3.3796 -1.2565 14 6 2.5061 4.1941 -1.3043 15 8 1.8667 4.4143 -0.2974 16 6 2.1010 4.8310 -2.6086 17 6 0.8616 5.7006 -2.3882 18 6 0.4507 6.3477 -3.7124 19 6 -0.7884 7.2178 -3.4919 20 6 -1.1934 7.8547 -4.7962 21 1 -0.6239 7.6589 -5.6926 22 6 -2.2906 8.6884 -4.8450 23 7 -2.9839 8.9272 -3.7532 24 14 -2.7923 9.4784 -6.4616 25 1 -1.8555 9.0527 -7.5324 26 1 -4.1716 9.0547 -6.8126 27 1 -2.7483 10.9564 -6.3249 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 7.2435 3.1363 -0.7740 34 1 6.4580 3.1895 -2.9931 35 1 5.8139 4.6806 -2.2731 36 1 4.3896 2.0173 -2.6447 37 1 3.9453 3.6065 -3.3192 38 1 2.9179 5.4496 -2.9799 39 1 1.8738 4.0532 -3.3376 40 1 0.0448 5.0815 -2.0171 41 1 1.0883 6.4783 -1.6591 42 1 1.2676 6.9668 -4.0831 43 1 0.2240 5.5702 -4.4418 44 1 -1.6055 6.5991 -3.1209 45 1 -0.5613 7.9953 -2.7626 46 1 -3.7556 9.5140 -3.7874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589832507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:05 Heat of formation + Delta-G solvation = -189.183495 kcal Electronic energy + Delta-G solvation = -28583.106130 eV Core-core repulsion = 24471.644784 eV Total energy + Delta-G solvation = -4111.461346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.26496 -41.11076 -40.19686 -37.75058 -37.47939 -36.61756 -35.42545 -34.63435 -33.24807 -31.29646 -30.16673 -28.83535 -27.57656 -26.34749 -24.79684 -24.12881 -22.11971 -21.85401 -21.04351 -19.54808 -18.90294 -18.60261 -18.39163 -18.08059 -17.78622 -17.31607 -17.14277 -16.91349 -16.54144 -16.41321 -15.89200 -15.61165 -15.04599 -15.01868 -14.59797 -14.51268 -14.36183 -14.01181 -13.80881 -13.59306 -13.36559 -13.23100 -13.21625 -12.95117 -12.84432 -12.73551 -12.61011 -12.28484 -12.13148 -12.11255 -11.79541 -11.63019 -11.37518 -11.34319 -11.31349 -11.08846 -10.60659 -10.55841 -10.19359 -9.74511 -8.18320 -6.30812 1.19568 1.21839 1.40796 1.41985 1.55436 1.65972 1.73653 1.81685 2.24288 2.42261 3.14525 3.31628 3.44049 3.59461 3.84841 3.89896 4.01912 4.02846 4.13644 4.17944 4.27420 4.28884 4.36476 4.46246 4.48239 4.66195 4.68354 4.69611 4.77510 4.82641 4.88421 4.97861 5.19172 5.27268 5.35492 5.38861 5.40160 5.57583 5.74719 5.78329 5.88397 6.11845 6.25130 6.34391 6.74441 6.88353 7.00686 7.33160 7.39095 8.94306 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.002696 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.840156 B =10382.128573 C =11627.158459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.444 3.556 4 O -0.504 6.504 5 C -0.106 4.106 6 C 0.144 3.856 7 H 0.097 0.903 8 C 0.528 3.472 9 O -0.582 6.582 10 N -0.699 5.699 11 C 0.091 3.909 12 C 0.076 3.924 13 N -0.620 5.620 14 C 0.515 3.485 15 O -0.548 6.548 16 C -0.122 4.122 17 C -0.094 4.094 18 C -0.092 4.092 19 C 0.018 3.982 20 C -0.539 4.539 21 H 0.069 0.931 22 C -0.009 4.009 23 N -0.940 5.940 24 Si 0.971 3.029 25 H -0.254 1.254 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.412 0.588 34 H 0.138 0.862 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.033 0.967 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.062 0.938 44 H -0.020 1.020 45 H -0.018 1.018 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.262 -21.579 -0.278 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.286 3.714 4 O -0.391 6.391 5 C -0.144 4.144 6 C 0.037 3.963 7 H 0.114 0.886 8 C 0.312 3.688 9 O -0.462 6.462 10 N -0.350 5.350 11 C -0.033 4.033 12 C -0.045 4.045 13 N -0.357 5.357 14 C 0.305 3.695 15 O -0.423 6.423 16 C -0.161 4.161 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.019 4.019 20 C -0.576 4.576 21 H 0.087 0.913 22 C -0.206 4.206 23 N -0.581 5.581 24 Si 0.795 3.205 25 H -0.178 1.178 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.250 0.750 34 H 0.156 0.844 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.080 0.920 44 H -0.002 1.002 45 H 0.001 0.999 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.552 -21.159 0.801 30.213 hybrid contribution -0.932 0.870 0.122 1.281 sum 20.620 -20.289 0.922 28.943 Atomic orbital electron populations 1.23420 0.75270 1.05371 1.01864 1.86454 1.24385 1.32922 1.84252 1.24022 0.92828 0.81599 0.72931 1.91017 1.67645 1.36288 1.44124 1.21584 0.87455 0.96271 1.09119 1.20805 0.90746 0.94163 0.90631 0.88550 1.19806 0.88843 0.76342 0.83778 1.90796 1.74994 1.52102 1.28332 1.45324 1.10778 1.66139 1.12785 1.22134 0.95947 1.01334 0.83865 1.22594 0.90048 1.04193 0.87650 1.48342 1.30063 1.47948 1.09375 1.21157 0.78975 0.77899 0.91500 1.90736 1.52585 1.60581 1.38407 1.21676 0.99461 1.00611 0.94358 1.21221 0.96657 0.97894 0.97440 1.21427 0.97493 0.98266 0.95793 1.19061 0.93502 0.93839 0.95499 1.21788 1.12143 1.27630 0.96088 0.91264 1.26133 0.96582 0.97404 1.00484 1.70154 1.19486 1.38283 1.30133 0.85313 0.78230 0.77866 0.79100 1.17752 1.20596 1.20578 0.93016 0.92767 0.84759 0.83764 0.84771 0.75049 0.84416 0.90461 0.87756 0.85041 0.85761 0.86526 0.94768 0.94286 0.91612 0.91953 1.00154 0.99950 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -7.40 10.57 -51.42 -0.54 -7.94 16 3 C 0.44 10.35 7.82 71.24 0.56 10.91 16 4 O -0.50 -16.65 11.41 29.66 0.34 -16.31 16 5 C -0.11 -1.66 5.38 29.85 0.16 -1.50 16 6 C 0.14 2.97 2.26 44.06 0.10 3.06 16 7 H 0.10 2.84 7.05 -2.39 -0.02 2.82 16 8 C 0.53 9.67 7.10 87.79 0.62 10.30 16 9 O -0.58 -15.22 17.80 -3.03 -0.05 -15.28 16 10 N -0.70 -6.67 5.43 -466.87 -2.53 -9.20 16 11 C 0.09 0.29 7.34 86.52 0.64 0.92 16 12 C 0.08 0.48 6.31 86.23 0.54 1.02 16 13 N -0.62 -11.42 2.39 -799.21 -1.91 -13.33 16 14 C 0.52 14.42 6.54 87.66 0.57 14.99 16 15 O -0.55 -21.90 12.92 20.16 0.26 -21.64 16 16 C -0.12 -2.92 4.07 29.85 0.12 -2.80 16 17 C -0.09 -3.48 4.50 30.60 0.14 -3.34 16 18 C -0.09 -3.74 5.15 30.60 0.16 -3.58 16 19 C 0.02 1.01 4.97 29.85 0.15 1.15 16 20 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 21 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 22 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 23 N -0.94 -59.74 13.29 21.45 0.28 -59.45 16 24 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 25 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.05 1.09 8.13 -2.38 -0.02 1.07 16 30 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.14 1.19 7.35 -2.39 -0.02 1.18 16 32 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.41 2.81 8.80 -92.71 -0.82 1.99 16 34 H 0.14 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.10 0.20 7.40 -2.39 -0.02 0.18 16 37 H 0.13 0.39 6.03 -2.38 -0.01 0.38 16 38 H 0.12 2.12 7.88 -2.39 -0.02 2.10 16 39 H 0.12 2.16 7.83 -2.39 -0.02 2.14 16 40 H 0.03 1.44 8.10 -2.39 -0.02 1.42 16 41 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 42 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 44 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 45 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 46 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -92.54 377.23 3.70 -88.84 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.18 Total: 5.68 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.65 Total: 1.92 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -4.16 Total: -81.98 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: 0.00 Total: -61.17 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -92.54 3.70 -88.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589832507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.345 kcal (2) G-P(sol) polarization free energy of solvation -92.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds