Wall clock time and date at job start Fri Apr 10 2020 18:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00417 * 2 1 4 4 O 1.20828 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00469 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.49251 * 60.00471 * 5 3 2 7 7 C 1.53036 * 109.50120 * 180.02562 * 5 3 2 8 8 C 1.53039 * 109.54099 * 181.28598 * 7 5 3 9 9 H 1.08999 * 109.52452 * 178.69952 * 8 7 5 10 10 O 1.42897 * 109.46929 * 58.63742 * 8 7 5 11 11 C 1.53185 * 109.34080 * 298.68591 * 8 7 5 12 12 N 1.46930 * 108.77785 * 54.61682 * 11 8 7 13 13 C 1.34777 * 120.63280 * 126.41360 * 12 11 8 14 14 O 1.21587 * 119.99951 * 175.08070 * 13 12 11 15 15 N 1.34776 * 119.99639 * 355.08259 * 13 12 11 16 16 C 1.46502 * 119.99544 * 184.68490 * 15 13 12 17 17 C 1.53003 * 109.47030 * 184.86315 * 16 15 13 18 18 C 1.50699 * 115.54872 * 305.43689 * 17 16 15 19 19 H 1.07998 * 120.00129 * 144.71392 * 18 17 16 20 20 C 1.37884 * 120.00014 * 324.70967 * 18 17 16 21 21 N 1.31514 * 119.99512 * 2.92528 * 20 18 17 22 22 Si 1.86798 * 120.00100 * 182.92994 * 20 18 17 23 23 H 1.48497 * 109.47151 * 59.99852 * 22 20 18 24 24 H 1.48494 * 109.47207 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46833 * 299.99812 * 22 20 18 26 26 C 1.52996 * 117.50001 * 159.76179 * 17 16 15 27 27 C 1.52997 * 117.50075 * 91.09931 * 17 16 15 28 28 C 1.46933 * 118.73826 * 306.39273 * 12 11 8 29 29 H 1.08999 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46484 * 59.99480 * 1 2 3 31 31 H 1.08998 * 109.46986 * 299.99841 * 1 2 3 32 32 H 1.09001 * 109.45811 * 301.34258 * 7 5 3 33 33 H 1.09002 * 109.45601 * 61.29885 * 7 5 3 34 34 H 0.96705 * 114.00259 * 180.14722 * 10 8 7 35 35 H 1.09007 * 109.58566 * 294.83346 * 11 8 7 36 36 H 1.08997 * 109.59254 * 174.40322 * 11 8 7 37 37 H 0.96999 * 120.00311 * 4.68294 * 15 13 12 38 38 H 1.08999 * 109.47080 * 304.86138 * 16 15 13 39 39 H 1.09001 * 109.47393 * 64.86313 * 16 15 13 40 40 H 0.97004 * 119.99622 * 185.00573 * 21 20 18 41 41 H 1.08996 * 117.49939 * 0.02562 * 26 17 16 42 42 H 1.08999 * 117.49488 * 145.02081 * 26 17 16 43 43 H 1.08999 * 117.50657 * 214.98028 * 27 17 16 44 44 H 1.09007 * 117.49577 * 0.02562 * 27 17 16 45 45 H 1.08999 * 109.58435 * 293.82175 * 28 12 11 46 46 H 1.08993 * 109.70469 * 173.46177 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9569 0.7806 -0.8891 7 6 4.0011 2.7421 0.0011 8 6 5.5290 2.8234 -0.0307 9 1 5.8378 3.8685 -0.0536 10 8 6.0173 2.1562 -1.1961 11 6 6.0990 2.1492 1.2211 12 7 5.5691 0.7813 1.3044 13 6 6.4018 -0.2715 1.4263 14 8 5.9497 -1.3891 1.5841 15 7 7.7356 -0.0854 1.3732 16 6 8.6379 -1.2392 1.4024 17 6 10.0874 -0.7519 1.4527 18 6 10.4901 0.2039 0.3595 19 1 11.1877 1.0012 0.5692 20 6 9.9679 0.0605 -0.9086 21 7 9.0751 -0.8744 -1.1501 22 14 10.5289 1.1939 -2.2833 23 1 11.9934 1.0468 -2.4796 24 1 9.8231 0.8353 -3.5396 25 1 10.2164 2.6004 -1.9237 26 6 11.1459 -1.7347 1.9573 27 6 10.7185 -0.5536 2.8323 28 6 4.1142 0.5829 1.2528 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 3.5920 3.2423 -0.8767 33 1 3.6306 3.2302 0.9026 34 1 6.9806 2.1661 -1.2805 35 1 5.8011 2.7109 2.1065 36 1 7.1865 2.1163 1.1554 37 1 8.0981 0.8125 1.3156 38 1 8.4268 -1.8432 2.2848 39 1 8.4877 -1.8407 0.5059 40 1 8.7616 -1.0232 -2.0560 41 1 10.8097 -2.7285 2.2529 42 1 12.1337 -1.6896 1.4987 43 1 11.4254 0.2678 2.9491 44 1 10.1012 -0.7707 3.7041 45 1 3.6545 1.0170 2.1407 46 1 3.8899 -0.4828 1.2091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592020572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:25 Heat of formation + Delta-G solvation = -125.711973 kcal Electronic energy + Delta-G solvation = -29754.157138 eV Core-core repulsion = 25645.448123 eV Total energy + Delta-G solvation = -4108.709014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87366 -39.72584 -37.90356 -36.71252 -36.55045 -35.01053 -33.39048 -32.38607 -32.04059 -30.27481 -27.89549 -26.36117 -25.54459 -24.85518 -23.68813 -21.68957 -21.24570 -20.14456 -19.31135 -19.13081 -18.03887 -17.54231 -16.85296 -16.63121 -16.43890 -16.06027 -15.36615 -15.08347 -14.80341 -14.51866 -14.34025 -14.05868 -13.72080 -13.44854 -13.36093 -13.27649 -12.90954 -12.72222 -12.54271 -12.24874 -11.85299 -11.75708 -11.41463 -11.28750 -11.14683 -11.05201 -10.94474 -10.87782 -10.77180 -10.54145 -10.48630 -10.27663 -10.02903 -9.71638 -9.28641 -8.99084 -8.87931 -8.36264 -8.29181 -7.67091 -6.01898 -4.23426 2.07810 2.58333 3.14389 3.21633 3.26707 3.27654 3.99570 4.23977 4.26729 4.51759 4.59230 4.74173 4.84725 4.89099 4.95073 4.99324 5.03203 5.05911 5.23727 5.36174 5.45331 5.52290 5.59625 5.68608 5.73461 5.84502 6.02595 6.04756 6.09525 6.28211 6.30963 6.54004 6.61805 6.74927 6.76037 6.90023 7.06995 7.24949 7.50978 7.60865 7.63362 7.75750 7.80494 7.97799 8.29626 8.72227 8.91622 9.39275 9.45681 10.85966 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.004039 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.515395 B = 6930.599861 C = 7786.202775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.473 3.527 4 O -0.511 6.511 5 C -0.094 4.094 6 H 0.125 0.875 7 C -0.092 4.092 8 C 0.092 3.908 9 H 0.069 0.931 10 O -0.556 6.556 11 C 0.077 3.923 12 N -0.627 5.627 13 C 0.708 3.292 14 O -0.605 6.605 15 N -0.698 5.698 16 C 0.182 3.818 17 C 0.038 3.962 18 C -0.500 4.500 19 H 0.059 0.941 20 C 0.076 3.924 21 N -0.860 5.860 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.276 1.276 26 C -0.198 4.198 27 C -0.213 4.213 28 C 0.148 3.852 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.385 0.615 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.393 0.607 38 H 0.019 0.981 39 H 0.111 0.889 40 H 0.264 0.736 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 6.753 2.696 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.315 3.685 4 O -0.399 6.399 5 C -0.114 4.114 6 H 0.143 0.857 7 C -0.129 4.129 8 C 0.032 3.968 9 H 0.087 0.913 10 O -0.363 6.363 11 C -0.047 4.047 12 N -0.365 5.365 13 C 0.409 3.591 14 O -0.485 6.485 15 N -0.350 5.350 16 C 0.059 3.941 17 C 0.037 3.963 18 C -0.538 4.538 19 H 0.077 0.923 20 C -0.129 4.129 21 N -0.496 5.496 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.237 4.237 27 C -0.250 4.250 28 C 0.023 3.977 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.229 0.771 38 H 0.037 0.963 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.487 6.036 2.555 14.103 hybrid contribution 1.039 1.219 -0.755 1.770 sum -11.448 7.255 1.800 13.673 Atomic orbital electron populations 1.23268 0.76543 1.03745 1.02349 1.86579 1.23252 1.33334 1.83741 1.23746 0.91819 0.81243 0.71660 1.90641 1.67203 1.36394 1.45668 1.21457 0.86379 0.99725 1.03820 0.85721 1.21409 0.93602 0.93953 1.03985 1.22130 0.93885 0.95177 0.85646 0.91278 1.86483 1.27539 1.79372 1.42867 1.22390 1.00058 0.84041 0.98225 1.46939 1.05168 1.05172 1.79269 1.15800 0.81844 0.83390 0.78039 1.90830 1.76397 1.22457 1.58779 1.44961 1.02815 1.11196 1.76062 1.20964 0.85981 0.86453 1.00728 1.19232 0.89830 0.96644 0.90611 1.20470 1.26637 1.13317 0.93359 0.92287 1.24987 0.93863 0.95612 0.98434 1.69877 1.27765 1.31387 1.20569 0.86726 0.79194 0.80815 0.81629 1.20343 1.21087 1.20197 1.22936 1.01509 0.93151 1.06110 1.22951 1.05541 1.00658 0.95856 1.21115 0.80003 1.02664 0.93884 0.88046 0.92019 0.91938 0.90232 0.89762 0.76668 0.90917 0.89061 0.77088 0.96260 0.87178 0.92497 0.91452 0.90265 0.90744 0.91390 0.92056 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.51 10.49 -39.25 -0.41 -4.92 16 3 C 0.47 6.39 7.26 36.01 0.26 6.65 16 4 O -0.51 -7.60 15.73 -18.75 -0.29 -7.89 16 5 C -0.09 -1.26 2.64 -91.65 -0.24 -1.51 16 6 H 0.12 1.91 7.61 -51.92 -0.40 1.52 16 7 C -0.09 -1.10 4.21 -26.69 -0.11 -1.21 16 8 C 0.09 1.10 3.81 -26.62 -0.10 1.00 16 9 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 10 O -0.56 -8.26 12.51 -35.23 -0.44 -8.70 16 11 C 0.08 0.99 6.07 -3.71 -0.02 0.97 16 12 N -0.63 -10.17 2.91 -178.49 -0.52 -10.69 16 13 C 0.71 14.70 8.30 -86.92 -0.72 13.97 16 14 O -0.60 -14.73 15.76 5.29 0.08 -14.64 16 15 N -0.70 -14.50 5.07 -65.22 -0.33 -14.83 16 16 C 0.18 4.23 4.62 -4.04 -0.02 4.21 16 17 C 0.04 0.85 2.06 -155.66 -0.32 0.53 16 18 C -0.50 -11.98 8.31 -34.44 -0.29 -12.27 16 19 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 20 C 0.08 1.81 5.31 -17.82 -0.09 1.71 16 21 N -0.86 -21.60 10.17 55.43 0.56 -21.04 16 22 Si 0.89 18.67 29.54 -169.99 -5.02 13.65 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.20 -4.24 9.96 -26.70 -0.27 -4.50 16 27 C -0.21 -4.32 9.93 -26.69 -0.26 -4.59 16 28 C 0.15 2.16 5.63 -3.71 -0.02 2.14 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.38 5.42 9.08 45.56 0.41 5.83 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.22 5.56 -51.93 -0.29 0.93 16 37 H 0.39 7.65 5.40 -40.82 -0.22 7.43 16 38 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 39 H 0.11 2.92 5.90 -51.93 -0.31 2.62 16 40 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 43 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.11 1.76 7.04 -51.93 -0.37 1.39 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -29.78 374.56 -8.07 -37.85 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -6.19 Total: 17.08 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -1.14 Total: 8.49 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.29 Total: -46.56 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.06 Total: -36.16 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.78 -8.07 -37.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592020572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.861 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds