Wall clock time and date at job start Fri Apr 10 2020 18:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42894 * 114.00374 * 2 1 4 4 C 1.53004 * 109.47288 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46978 * 64.99697 * 4 3 2 6 6 C 1.46762 * 124.35128 * 269.99879 * 5 4 3 7 7 C 1.54476 * 105.47569 * 162.96714 * 6 5 4 8 8 H 1.09006 * 110.99986 * 267.28694 * 7 6 5 9 9 C 1.50692 * 110.97275 * 143.53690 * 7 6 5 10 10 O 1.21289 * 119.99820 * 6.16053 * 9 7 6 11 11 N 1.34780 * 120.00244 * 186.16867 * 9 7 6 12 12 C 1.47018 * 125.64417 * 359.96885 * 11 9 7 13 13 C 1.54330 * 107.26788 * 178.98890 * 12 11 9 14 14 C 1.55154 * 102.94062 * 337.80820 * 13 12 11 15 15 O 1.42902 * 111.00802 * 277.38621 * 14 13 12 16 16 C 1.50706 * 111.00112 * 153.57889 * 14 13 12 17 17 H 1.08000 * 119.99302 * 241.45313 * 16 14 13 18 18 C 1.37871 * 120.00436 * 61.17846 * 16 14 13 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47154 * 89.99418 * 20 18 16 22 22 H 1.48493 * 109.47010 * 209.99942 * 20 18 16 23 23 H 1.48502 * 109.46736 * 329.99638 * 20 18 16 24 24 C 1.47426 * 125.64814 * 180.02562 * 11 9 7 25 25 C 1.54629 * 101.76317 * 25.41173 * 7 6 5 26 26 C 1.34420 * 124.34915 * 89.97970 * 5 4 3 27 27 O 1.21278 * 124.94004 * 0.38739 * 26 5 4 28 28 H 1.09002 * 109.47621 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47539 * 300.00452 * 1 2 3 30 30 H 1.08999 * 109.47141 * 59.99958 * 1 2 3 31 31 H 1.08997 * 109.47432 * 59.99550 * 3 2 1 32 32 H 1.08999 * 109.46958 * 299.99363 * 3 2 1 33 33 H 1.09000 * 109.46822 * 304.99975 * 4 3 2 34 34 H 1.09002 * 109.46938 * 184.99847 * 4 3 2 35 35 H 1.08999 * 110.24618 * 43.95995 * 6 5 4 36 36 H 1.09003 * 110.24364 * 281.96978 * 6 5 4 37 37 H 1.09000 * 109.88337 * 59.57394 * 12 11 9 38 38 H 1.08998 * 109.88630 * 298.40516 * 12 11 9 39 39 H 1.09002 * 110.71870 * 219.44749 * 13 12 11 40 40 H 1.08998 * 110.71631 * 96.17292 * 13 12 11 41 41 H 0.96699 * 114.00112 * 295.42404 * 15 14 13 42 42 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36680 * 85.24477 * 24 11 9 44 44 H 1.09002 * 110.36562 * 322.91697 * 24 11 9 45 45 H 1.09003 * 110.48013 * 93.88381 * 25 7 6 46 46 H 1.09002 * 110.48482 * 216.52135 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5637 -1.2509 6 6 4.1391 -0.8818 -1.4460 7 6 4.1816 -1.0889 -2.9762 8 1 3.1872 -1.3005 -3.3695 9 6 5.1489 -2.1838 -3.3456 10 8 5.6814 -2.8412 -2.4766 11 7 5.4224 -2.4324 -4.6418 12 6 4.8502 -1.7158 -5.7909 13 6 5.4707 -2.3249 -7.0659 14 6 6.7814 -2.9683 -6.5412 15 8 7.8230 -1.9956 -6.4355 16 6 7.2072 -4.1182 -7.4174 17 1 7.2764 -5.1141 -7.0054 18 6 7.5027 -3.8998 -8.7462 19 7 7.4127 -2.6880 -9.2493 20 14 8.0297 -5.3252 -9.8324 21 1 6.8314 -5.9410 -10.4569 22 1 8.9409 -4.8278 -10.8942 23 1 8.7358 -6.3399 -9.0095 24 6 6.3439 -3.4687 -5.1420 25 6 4.6892 0.2869 -3.4666 26 6 4.2843 1.2449 -2.3681 27 8 4.2426 2.4518 -2.4794 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8462 -0.8900 33 1 3.8507 0.5683 0.8427 34 1 3.9785 2.1764 0.0902 35 1 3.2930 -1.4179 -1.0161 36 1 5.0708 -1.2211 -0.9934 37 1 5.0980 -0.6562 -5.7278 38 1 3.7680 -1.8451 -5.8071 39 1 5.6889 -1.5474 -7.7980 40 1 4.8124 -3.0826 -7.4910 41 1 8.0956 -1.6176 -7.2828 42 1 7.6203 -2.5343 -10.1843 43 1 5.8292 -4.4259 -5.2253 44 1 7.2081 -3.5577 -4.4836 45 1 5.7731 0.2746 -3.5817 46 1 4.2079 0.5583 -4.4062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:32 Heat of formation + Delta-G solvation = -156.382542 kcal Electronic energy + Delta-G solvation = -28916.829333 eV Core-core repulsion = 24806.790343 eV Total energy + Delta-G solvation = -4110.038990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85364 -39.30345 -38.09255 -37.40465 -36.11285 -34.41946 -33.43741 -32.26119 -30.14199 -29.33258 -28.24896 -27.70923 -26.62986 -25.34849 -23.57868 -23.04358 -21.71303 -19.91064 -19.47097 -18.77303 -17.47900 -17.21611 -16.94696 -16.75331 -15.97562 -15.90480 -15.45038 -15.17668 -15.04151 -14.90011 -14.49674 -14.16008 -13.84381 -13.74543 -13.40245 -13.21411 -12.90189 -12.60488 -12.34416 -12.28690 -12.19080 -12.10156 -11.78362 -11.65943 -11.45153 -11.42088 -11.30058 -11.17031 -10.89854 -10.66226 -10.52024 -10.12580 -10.06440 -9.90960 -9.47951 -9.36772 -8.81374 -8.73205 -8.26712 -8.07626 -6.32453 -4.40992 2.49881 2.80556 2.90185 3.17162 3.25372 3.28766 3.40362 3.47415 4.22463 4.24350 4.36136 4.70369 4.75422 4.77883 4.91867 4.93477 4.95824 5.04929 5.08023 5.15941 5.24831 5.36940 5.43660 5.49154 5.55234 5.58773 5.67049 5.76115 5.80386 5.92647 5.97965 6.23311 6.37410 6.38611 6.58571 6.77007 6.83837 6.90043 7.00506 7.26062 7.31103 7.69287 7.95480 8.03322 8.07722 8.49076 8.62169 9.26420 9.35159 10.74592 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.002715 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.722430 B =10308.998453 C =10592.726801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.043 3.957 4 C 0.129 3.871 5 N -0.613 5.613 6 C 0.123 3.877 7 C -0.117 4.117 8 H 0.114 0.886 9 C 0.535 3.465 10 O -0.550 6.550 11 N -0.601 5.601 12 C 0.093 3.907 13 C -0.136 4.136 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.120 3.880 25 C -0.145 4.145 26 C 0.521 3.479 27 O -0.536 6.536 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.381 0.619 42 H 0.268 0.732 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 6.476 13.327 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.035 4.035 4 C 0.007 3.993 5 N -0.347 5.347 6 C 0.000 4.000 7 C -0.139 4.139 8 H 0.132 0.868 9 C 0.322 3.678 10 O -0.429 6.429 11 N -0.333 5.333 12 C -0.029 4.029 13 C -0.175 4.175 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.001 4.001 25 C -0.185 4.185 26 C 0.310 3.690 27 O -0.413 6.413 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.231 0.769 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.130 0.870 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.197 6.601 14.342 19.951 hybrid contribution -0.122 -0.377 -1.421 1.475 sum -12.319 6.223 12.921 18.906 Atomic orbital electron populations 1.22733 0.81041 1.02819 0.99853 1.87894 1.19695 1.27557 1.95406 1.23057 0.94362 0.85244 1.00844 1.21417 0.91990 0.99843 0.86036 1.48232 1.66446 1.08068 1.11975 1.21996 1.04102 0.79808 0.94129 1.22153 1.00624 0.94151 0.96962 0.86841 1.19570 0.82438 0.84248 0.81584 1.90679 1.53234 1.51166 1.47809 1.48563 1.44240 1.35823 1.04632 1.22337 0.96732 0.96475 0.87405 1.23180 0.99171 1.01002 0.94113 1.19606 0.84094 0.86953 0.88626 1.86132 1.56824 1.59616 1.36568 1.21433 1.47076 0.94565 0.94386 0.91713 1.24988 0.93995 0.96217 0.97804 1.69716 1.48443 1.20215 1.14961 0.86417 0.78609 0.82087 0.79889 1.20481 1.21027 1.19685 1.22404 0.91868 0.89630 0.96230 1.22394 1.04652 0.92510 0.98939 1.20874 0.75781 0.88148 0.84238 1.90709 1.54199 1.13603 1.82806 0.89543 0.94201 0.94140 0.92242 0.92773 0.89225 0.88359 0.89003 0.89274 0.91919 0.92735 0.89401 0.91354 0.76867 0.92185 0.90891 0.91018 0.86980 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.76 9.89 -35.23 -0.35 -4.11 16 3 C 0.04 0.37 6.28 37.16 0.23 0.60 16 4 C 0.13 1.21 6.32 -4.04 -0.03 1.19 16 5 N -0.61 -7.28 2.88 -172.42 -0.50 -7.78 16 6 C 0.12 1.48 6.59 -3.12 -0.02 1.46 16 7 C -0.12 -1.50 3.03 -90.14 -0.27 -1.78 16 8 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 9 C 0.53 9.11 7.13 -10.99 -0.08 9.03 16 10 O -0.55 -10.98 15.83 5.55 0.09 -10.90 16 11 N -0.60 -10.94 3.33 -170.52 -0.57 -11.50 16 12 C 0.09 1.55 6.08 -3.06 -0.02 1.53 16 13 C -0.14 -2.76 5.37 -24.89 -0.13 -2.89 16 14 C 0.25 5.69 0.88 -89.62 -0.08 5.61 16 15 O -0.58 -14.20 13.18 -35.23 -0.46 -14.67 16 16 C -0.54 -13.46 8.27 -34.44 -0.28 -13.74 16 17 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 18 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 19 N -0.89 -22.28 10.73 55.43 0.59 -21.69 16 20 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C 0.12 2.54 6.08 -2.53 -0.02 2.52 16 25 C -0.14 -1.87 4.94 -26.75 -0.13 -2.01 16 26 C 0.52 7.28 8.02 -10.86 -0.09 7.20 16 27 O -0.54 -9.07 17.59 5.56 0.10 -8.97 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.89 7.92 -51.93 -0.41 0.48 16 35 H 0.09 1.04 7.44 -51.93 -0.39 0.65 16 36 H 0.09 1.19 7.06 -51.93 -0.37 0.83 16 37 H 0.06 0.97 6.19 -51.93 -0.32 0.65 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.88 7.53 -51.93 -0.39 1.49 16 40 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 41 H 0.38 9.34 7.52 45.56 0.34 9.68 16 42 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 43 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 44 H 0.07 1.62 8.04 -51.93 -0.42 1.20 16 45 H 0.11 1.59 7.89 -51.93 -0.41 1.18 16 46 H 0.11 1.30 7.16 -51.93 -0.37 0.93 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -29.91 373.62 -6.88 -36.79 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.49 Total: 10.75 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 0.10 Total: 11.77 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.47 Total: -40.97 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.63 Total: -38.64 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.91 -6.88 -36.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.597 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds