Wall clock time and date at job start Fri Apr 10 2020 18:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42894 * 114.00374 * 2 1 4 4 C 1.53004 * 109.47288 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46978 * 64.99697 * 4 3 2 6 6 C 1.46762 * 124.35128 * 269.99879 * 5 4 3 7 7 C 1.54476 * 105.47569 * 162.96714 * 6 5 4 8 8 H 1.09006 * 110.99986 * 267.28694 * 7 6 5 9 9 C 1.50692 * 110.97275 * 143.53690 * 7 6 5 10 10 O 1.21289 * 119.99820 * 6.16053 * 9 7 6 11 11 N 1.34780 * 120.00244 * 186.16867 * 9 7 6 12 12 C 1.47018 * 125.64417 * 359.96885 * 11 9 7 13 13 C 1.54330 * 107.26788 * 178.98890 * 12 11 9 14 14 C 1.55154 * 102.94062 * 337.80820 * 13 12 11 15 15 O 1.42902 * 111.00802 * 277.38621 * 14 13 12 16 16 C 1.50706 * 111.00112 * 153.57889 * 14 13 12 17 17 H 1.08000 * 119.99302 * 241.45313 * 16 14 13 18 18 C 1.37871 * 120.00436 * 61.17846 * 16 14 13 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47154 * 89.99418 * 20 18 16 22 22 H 1.48493 * 109.47010 * 209.99942 * 20 18 16 23 23 H 1.48502 * 109.46736 * 329.99638 * 20 18 16 24 24 C 1.47426 * 125.64814 * 180.02562 * 11 9 7 25 25 C 1.54629 * 101.76317 * 25.41173 * 7 6 5 26 26 C 1.34420 * 124.34915 * 89.97970 * 5 4 3 27 27 O 1.21278 * 124.94004 * 0.38739 * 26 5 4 28 28 H 1.09002 * 109.47621 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47539 * 300.00452 * 1 2 3 30 30 H 1.08999 * 109.47141 * 59.99958 * 1 2 3 31 31 H 1.08997 * 109.47432 * 59.99550 * 3 2 1 32 32 H 1.08999 * 109.46958 * 299.99363 * 3 2 1 33 33 H 1.09000 * 109.46822 * 304.99975 * 4 3 2 34 34 H 1.09002 * 109.46938 * 184.99847 * 4 3 2 35 35 H 1.08999 * 110.24618 * 43.95995 * 6 5 4 36 36 H 1.09003 * 110.24364 * 281.96978 * 6 5 4 37 37 H 1.09000 * 109.88337 * 59.57394 * 12 11 9 38 38 H 1.08998 * 109.88630 * 298.40516 * 12 11 9 39 39 H 1.09002 * 110.71870 * 219.44749 * 13 12 11 40 40 H 1.08998 * 110.71631 * 96.17292 * 13 12 11 41 41 H 0.96699 * 114.00112 * 295.42404 * 15 14 13 42 42 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36680 * 85.24477 * 24 11 9 44 44 H 1.09002 * 110.36562 * 322.91697 * 24 11 9 45 45 H 1.09003 * 110.48013 * 93.88381 * 25 7 6 46 46 H 1.09002 * 110.48482 * 216.52135 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5637 -1.2509 6 6 4.1391 -0.8818 -1.4460 7 6 4.1816 -1.0889 -2.9762 8 1 3.1872 -1.3005 -3.3695 9 6 5.1489 -2.1838 -3.3456 10 8 5.6814 -2.8412 -2.4766 11 7 5.4224 -2.4324 -4.6418 12 6 4.8502 -1.7158 -5.7909 13 6 5.4707 -2.3249 -7.0659 14 6 6.7814 -2.9683 -6.5412 15 8 7.8230 -1.9956 -6.4355 16 6 7.2072 -4.1182 -7.4174 17 1 7.2764 -5.1141 -7.0054 18 6 7.5027 -3.8998 -8.7462 19 7 7.4127 -2.6880 -9.2493 20 14 8.0297 -5.3252 -9.8324 21 1 6.8314 -5.9410 -10.4569 22 1 8.9409 -4.8278 -10.8942 23 1 8.7358 -6.3399 -9.0095 24 6 6.3439 -3.4687 -5.1420 25 6 4.6892 0.2869 -3.4666 26 6 4.2843 1.2449 -2.3681 27 8 4.2426 2.4518 -2.4794 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8462 -0.8900 33 1 3.8507 0.5683 0.8427 34 1 3.9785 2.1764 0.0902 35 1 3.2930 -1.4179 -1.0161 36 1 5.0708 -1.2211 -0.9934 37 1 5.0980 -0.6562 -5.7278 38 1 3.7680 -1.8451 -5.8071 39 1 5.6889 -1.5474 -7.7980 40 1 4.8124 -3.0826 -7.4910 41 1 8.0956 -1.6176 -7.2828 42 1 7.6203 -2.5343 -10.1843 43 1 5.8292 -4.4259 -5.2253 44 1 7.2081 -3.5577 -4.4836 45 1 5.7731 0.2746 -3.5817 46 1 4.2079 0.5583 -4.4062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:31 Heat of formation + Delta-G solvation = -178.296148 kcal Electronic energy + Delta-G solvation = -28917.779578 eV Core-core repulsion = 24806.790343 eV Total energy + Delta-G solvation = -4110.989235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.98787 -40.66112 -38.99123 -38.77717 -37.25463 -36.09590 -34.40779 -34.18519 -31.58604 -30.45873 -29.75065 -28.77304 -27.36740 -26.91680 -24.79462 -24.01339 -23.00883 -21.56688 -20.57622 -20.10834 -19.13341 -18.40183 -18.14427 -17.47591 -17.13044 -16.98067 -16.84028 -16.43224 -16.31176 -16.13578 -15.88977 -15.43477 -15.15389 -14.95262 -14.73621 -14.34036 -14.21391 -13.84502 -13.67933 -13.48466 -13.29872 -13.20077 -13.11142 -13.04038 -12.86242 -12.64962 -12.45702 -12.42978 -12.38719 -12.25091 -12.05715 -11.80585 -11.27125 -11.16134 -10.79663 -10.62731 -10.59992 -10.11413 -9.78537 -9.55584 -8.21745 -6.36459 1.42245 1.43054 1.47045 1.54273 1.55848 1.81197 2.10197 2.41769 2.84677 3.02936 3.13677 3.31648 3.59852 3.83155 3.83862 4.03028 4.05160 4.09974 4.15809 4.34364 4.38916 4.41099 4.50066 4.52720 4.56307 4.58038 4.61358 4.64538 4.72310 4.79294 4.82491 4.90236 4.90485 4.95958 5.21775 5.29736 5.47135 5.49319 5.59656 5.80806 5.96386 6.10556 6.21572 6.61036 6.68164 7.02626 7.10247 7.34003 7.42367 8.83447 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.002715 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.722430 B =10308.998453 C =10592.726801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.047 3.953 4 C 0.122 3.878 5 N -0.607 5.607 6 C 0.129 3.871 7 C -0.103 4.103 8 H 0.144 0.856 9 C 0.534 3.466 10 O -0.582 6.582 11 N -0.604 5.604 12 C 0.100 3.900 13 C -0.127 4.127 14 C 0.233 3.767 15 O -0.593 6.593 16 C -0.560 4.560 17 H 0.054 0.946 18 C 0.038 3.962 19 N -0.905 5.905 20 Si 0.957 3.043 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.277 1.277 24 C 0.126 3.874 25 C -0.141 4.141 26 C 0.520 3.480 27 O -0.570 6.570 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.377 0.623 42 H 0.270 0.730 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.098 0.902 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 6.741 13.829 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.339 5.339 6 C 0.006 3.994 7 C -0.124 4.124 8 H 0.162 0.838 9 C 0.323 3.677 10 O -0.463 6.463 11 N -0.335 5.335 12 C -0.022 4.022 13 C -0.166 4.166 14 C 0.193 3.807 15 O -0.401 6.401 16 C -0.599 4.599 17 H 0.072 0.928 18 C -0.164 4.164 19 N -0.544 5.544 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.202 1.202 24 C 0.003 3.997 25 C -0.181 4.181 26 C 0.308 3.692 27 O -0.450 6.450 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.227 0.773 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.116 0.884 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.126 6.864 14.866 21.626 hybrid contribution 0.503 -0.489 -1.523 1.677 sum -13.623 6.375 13.344 20.106 Atomic orbital electron populations 1.22872 0.79782 1.03633 1.00562 1.87852 1.21131 1.27991 1.95553 1.23000 0.93524 0.85130 1.01347 1.21671 0.92829 1.00139 0.85317 1.48318 1.65416 1.07848 1.12317 1.21924 1.03993 0.79918 0.93539 1.22113 1.00553 0.92201 0.97582 0.83797 1.20236 0.82350 0.84523 0.80555 1.90668 1.54537 1.52578 1.48553 1.48586 1.43906 1.35407 1.05625 1.22368 0.98469 0.96564 0.84763 1.22955 0.97787 1.00317 0.95536 1.19789 0.84854 0.86525 0.89569 1.86122 1.57709 1.59926 1.36348 1.21668 1.48053 0.94889 0.95266 0.92762 1.25568 0.93979 0.98196 0.98661 1.69781 1.48342 1.21106 1.15161 0.85578 0.78283 0.79587 0.78268 1.19810 1.20788 1.20230 1.22139 0.91841 0.90742 0.94953 1.22368 1.03931 0.92207 0.99614 1.20962 0.75557 0.87750 0.84921 1.90693 1.55903 1.14924 1.83447 0.88745 0.92855 0.94077 0.89871 0.94101 0.87622 0.88175 0.87614 0.90688 0.90473 0.88899 0.90752 0.91934 0.77336 0.92039 0.90685 0.93424 0.88393 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -6.87 9.89 -148.98 -1.47 -8.34 16 3 C 0.05 0.72 6.28 71.98 0.45 1.17 16 4 C 0.12 2.04 6.32 86.38 0.55 2.59 16 5 N -0.61 -13.30 2.88 -817.99 -2.36 -15.66 16 6 C 0.13 2.85 6.59 86.83 0.57 3.42 16 7 C -0.10 -2.39 3.03 -10.49 -0.03 -2.42 16 8 H 0.14 2.55 8.14 -2.38 -0.02 2.53 16 9 C 0.53 17.46 7.13 87.65 0.63 18.09 16 10 O -0.58 -23.04 15.83 -3.06 -0.05 -23.09 16 11 N -0.60 -21.25 3.33 -811.79 -2.70 -23.95 16 12 C 0.10 3.09 6.08 86.73 0.53 3.62 16 13 C -0.13 -5.06 5.37 31.78 0.17 -4.89 16 14 C 0.23 10.78 0.88 -10.15 -0.01 10.77 16 15 O -0.59 -29.37 13.18 -148.98 -1.96 -31.33 16 16 C -0.56 -28.49 8.27 25.60 0.21 -28.27 16 17 H 0.05 2.79 7.79 -2.91 -0.02 2.76 16 18 C 0.04 1.87 5.27 84.65 0.45 2.31 16 19 N -0.91 -45.04 10.73 21.45 0.23 -44.81 16 20 Si 0.96 40.30 29.54 68.60 2.03 42.32 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.13 5.37 6.08 86.85 0.53 5.90 16 25 C -0.14 -3.37 4.94 30.59 0.15 -3.22 16 26 C 0.52 13.74 8.02 87.90 0.71 14.45 16 27 O -0.57 -18.76 17.59 -3.02 -0.05 -18.81 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.66 7.92 -2.39 -0.02 1.64 16 35 H 0.11 2.10 7.44 -2.39 -0.02 2.08 16 36 H 0.07 1.92 7.06 -2.39 -0.02 1.91 16 37 H 0.08 2.19 6.19 -2.39 -0.01 2.17 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.07 3.15 7.53 -2.39 -0.02 3.13 16 40 H 0.06 2.52 8.03 -2.39 -0.02 2.51 16 41 H 0.38 18.86 7.52 -74.06 -0.56 18.31 16 42 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 43 H 0.08 3.12 8.03 -2.39 -0.02 3.10 16 44 H 0.05 2.22 8.04 -2.39 -0.02 2.20 16 45 H 0.10 2.68 7.89 -2.39 -0.02 2.66 16 46 H 0.13 2.62 7.16 -2.39 -0.02 2.61 16 Total: -1.00 -64.70 373.62 0.24 -64.46 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.44 Total: 34.13 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 6.14 Total: 25.07 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -4.83 Total: -84.42 kcal Atomic # 8 Polarization: -78.03 SS G_CDS: -3.54 Total: -81.57 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -64.70 0.24 -64.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.837 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds