Wall clock time and date at job start Fri Apr 10 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42896 * 114.00152 * 2 1 4 4 C 1.53004 * 109.47262 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46798 * 65.00053 * 4 3 2 6 6 C 1.46763 * 124.35088 * 270.00010 * 5 4 3 7 7 C 1.54483 * 105.47160 * 197.03941 * 6 5 4 8 8 H 1.09004 * 110.96722 * 92.70271 * 7 6 5 9 9 C 1.50699 * 110.96783 * 216.42574 * 7 6 5 10 10 O 1.21284 * 120.00233 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99978 * 180.02562 * 9 7 6 12 12 C 1.47020 * 125.64744 * 0.02562 * 11 9 7 13 13 C 1.54321 * 107.26921 * 181.02659 * 12 11 9 14 14 C 1.55154 * 102.94587 * 22.19472 * 13 12 11 15 15 O 1.42894 * 111.00528 * 82.57217 * 14 13 12 16 16 C 1.50702 * 111.00658 * 206.42792 * 14 13 12 17 17 H 1.07999 * 120.00065 * 24.82005 * 16 14 13 18 18 C 1.37879 * 119.99792 * 204.82747 * 16 14 13 19 19 N 1.31517 * 119.99699 * 173.51557 * 18 16 14 20 20 Si 1.86800 * 119.99988 * 353.51222 * 18 16 14 21 21 H 1.48497 * 109.46805 * 87.32851 * 20 18 16 22 22 H 1.48502 * 109.46892 * 207.32462 * 20 18 16 23 23 H 1.48498 * 109.47222 * 327.32417 * 20 18 16 24 24 C 1.47425 * 125.64729 * 179.72253 * 11 9 7 25 25 C 1.54775 * 101.69344 * 334.39239 * 7 6 5 26 26 C 1.34418 * 124.34887 * 90.02913 * 5 4 3 27 27 O 1.21284 * 124.94179 * 359.53185 * 26 5 4 28 28 H 1.08996 * 109.47299 * 299.99682 * 1 2 3 29 29 H 1.09007 * 109.47463 * 59.99816 * 1 2 3 30 30 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47018 * 60.00447 * 3 2 1 32 32 H 1.08996 * 109.47122 * 299.99954 * 3 2 1 33 33 H 1.09001 * 109.47183 * 305.00428 * 4 3 2 34 34 H 1.08995 * 109.47248 * 185.00067 * 4 3 2 35 35 H 1.08996 * 110.24643 * 316.03815 * 6 5 4 36 36 H 1.08999 * 110.24342 * 77.95356 * 6 5 4 37 37 H 1.08998 * 109.88610 * 300.44227 * 12 11 9 38 38 H 1.09002 * 109.88121 * 61.60916 * 12 11 9 39 39 H 1.09003 * 110.72283 * 140.56332 * 13 12 11 40 40 H 1.09000 * 110.72144 * 263.83052 * 13 12 11 41 41 H 0.96701 * 114.00032 * 56.21007 * 15 14 13 42 42 H 0.96997 * 119.99744 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.36339 * 274.74043 * 24 11 9 44 44 H 1.09004 * 110.36910 * 37.06821 * 24 11 9 45 45 H 1.08996 * 110.61601 * 266.39985 * 25 7 6 46 46 H 1.09004 * 110.42674 * 143.70946 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1390 -0.8816 -1.4461 7 6 5.0110 -1.0310 -2.7126 8 1 6.0674 -1.0999 -2.4529 9 6 4.5797 -2.2235 -3.5267 10 8 3.6557 -2.9129 -3.1500 11 7 5.2207 -2.5239 -4.6736 12 6 6.3515 -1.7774 -5.2441 13 6 6.7366 -2.4703 -6.5681 14 6 5.4395 -3.2295 -6.9532 15 8 4.5154 -2.3624 -7.6136 16 6 5.7507 -4.4332 -7.8049 17 1 6.7227 -4.9002 -7.7452 18 6 4.7945 -4.9382 -8.6604 19 7 5.1044 -5.9062 -9.4950 20 14 3.0592 -4.2474 -8.6338 21 1 2.9787 -3.0761 -9.5431 22 1 2.1041 -5.2911 -9.0853 23 1 2.7151 -3.8261 -7.2521 24 6 4.9081 -3.6593 -5.5605 25 6 4.7046 0.2883 -3.4618 26 6 4.2851 1.2452 -2.3678 27 8 4.2302 2.4513 -2.4833 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8507 0.5684 0.8427 34 1 3.9784 2.1764 0.0902 35 1 4.6430 -1.3240 -0.5869 36 1 3.1680 -1.3532 -1.5973 37 1 6.0552 -0.7465 -5.4377 38 1 7.1957 -1.7994 -4.5549 39 1 6.9924 -1.7330 -7.3291 40 1 7.5600 -3.1675 -6.4132 41 1 4.8753 -1.9294 -8.3998 42 1 4.4316 -6.2617 -10.0965 43 1 5.4186 -4.5595 -5.2185 44 1 3.8314 -3.8245 -5.6003 45 1 3.8930 0.1449 -4.1751 46 1 5.5979 0.6549 -3.9675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:36 Heat of formation + Delta-G solvation = -150.181590 kcal Electronic energy + Delta-G solvation = -29128.685112 eV Core-core repulsion = 25018.915015 eV Total energy + Delta-G solvation = -4109.770097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.93837 -39.47618 -38.07212 -37.73762 -36.20730 -34.85423 -33.53060 -32.41281 -30.51326 -29.50022 -28.46414 -27.81404 -26.59874 -25.37889 -23.60488 -23.14515 -22.00380 -19.98440 -19.60655 -18.89062 -17.58520 -17.49093 -17.12573 -16.70166 -16.15697 -15.78056 -15.66915 -15.21623 -15.13460 -15.07021 -14.61457 -14.52933 -13.93471 -13.75033 -13.71935 -13.34616 -12.89667 -12.69188 -12.53411 -12.47504 -12.34071 -12.20959 -12.09840 -11.85799 -11.71903 -11.50672 -11.41491 -11.33638 -10.93463 -10.62914 -10.34801 -10.26937 -10.13065 -9.93486 -9.56040 -9.27370 -8.87948 -8.64110 -8.57328 -8.19383 -6.24193 -4.37450 2.41223 2.70853 2.81939 3.27758 3.44607 3.50212 3.53910 3.71249 4.13335 4.25667 4.47261 4.60846 4.70575 4.72428 4.85607 4.92258 4.94256 5.05160 5.09020 5.10718 5.11898 5.17650 5.20770 5.33409 5.40265 5.45920 5.47921 5.50281 5.61861 5.69524 5.92357 5.98074 6.05509 6.30512 6.45509 6.50270 6.57232 6.65422 6.80371 6.93000 6.94426 7.40778 7.88881 7.98912 8.07709 8.39978 8.57139 8.76670 9.37529 10.84313 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018488 B = 0.003273 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.142876 B = 8553.821641 C = 9181.087771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.041 3.959 4 C 0.130 3.870 5 N -0.612 5.612 6 C 0.123 3.877 7 C -0.121 4.121 8 H 0.113 0.887 9 C 0.534 3.466 10 O -0.542 6.542 11 N -0.607 5.607 12 C 0.100 3.900 13 C -0.149 4.149 14 C 0.219 3.781 15 O -0.558 6.558 16 C -0.553 4.553 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.885 5.885 20 Si 0.947 3.053 21 H -0.292 1.292 22 H -0.325 1.325 23 H -0.268 1.268 24 C 0.113 3.887 25 C -0.142 4.142 26 C 0.521 3.479 27 O -0.536 6.536 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.371 0.629 42 H 0.268 0.732 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 13.655 17.540 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.037 4.037 4 C 0.008 3.992 5 N -0.346 5.346 6 C 0.000 4.000 7 C -0.142 4.142 8 H 0.131 0.869 9 C 0.320 3.680 10 O -0.420 6.420 11 N -0.339 5.339 12 C -0.023 4.023 13 C -0.187 4.187 14 C 0.179 3.821 15 O -0.366 6.366 16 C -0.591 4.591 17 H 0.100 0.900 18 C -0.130 4.130 19 N -0.520 5.520 20 Si 0.782 3.218 21 H -0.220 1.220 22 H -0.256 1.256 23 H -0.195 1.195 24 C -0.008 4.008 25 C -0.182 4.182 26 C 0.309 3.691 27 O -0.413 6.413 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.219 0.781 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.129 0.871 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.616 13.471 18.170 22.677 hybrid contribution -0.638 0.600 -0.547 1.033 sum -2.254 14.072 17.623 22.664 Atomic orbital electron populations 1.22735 0.80918 1.02981 0.99743 1.87919 1.19804 1.27231 1.95379 1.23039 0.94325 0.85507 1.00816 1.21423 0.92247 0.99692 0.85811 1.48219 1.66305 1.07996 1.12090 1.22005 1.01749 0.79964 0.96319 1.22243 1.02234 0.93852 0.95915 0.86853 1.19590 0.82395 0.85404 0.80565 1.90706 1.29191 1.52259 1.69824 1.48648 1.33227 1.30107 1.21950 1.22128 0.88213 0.95921 0.96088 1.23286 1.00876 0.99865 0.94719 1.20261 0.83930 0.88654 0.89274 1.86149 1.42785 1.62860 1.44812 1.21140 1.02060 1.12813 1.23042 0.89971 1.25154 1.00203 0.94022 0.93639 1.69959 1.35175 1.26225 1.20631 0.85705 0.81533 0.75552 0.78961 1.21961 1.25616 1.19452 1.23026 1.02144 0.87561 0.88092 1.22356 1.05007 0.93105 0.97770 1.20828 0.76164 0.88061 0.84010 1.90714 1.54613 1.13625 1.82380 0.94239 0.94144 0.89418 0.92268 0.92834 0.89265 0.88383 0.89967 0.88263 0.91780 0.92181 0.90611 0.90095 0.78098 0.92313 0.90103 0.90432 0.87142 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.25 10.53 -35.23 -0.37 -4.62 16 3 C 0.04 0.38 6.28 37.16 0.23 0.61 16 4 C 0.13 1.16 6.32 -4.04 -0.03 1.14 16 5 N -0.61 -6.89 2.88 -172.41 -0.50 -7.38 16 6 C 0.12 1.40 6.58 -3.12 -0.02 1.38 16 7 C -0.12 -1.41 2.92 -90.06 -0.26 -1.67 16 8 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 9 C 0.53 8.70 7.10 -10.99 -0.08 8.62 16 10 O -0.54 -10.82 15.76 5.55 0.09 -10.74 16 11 N -0.61 -10.27 3.32 -170.38 -0.57 -10.83 16 12 C 0.10 1.36 6.25 -3.07 -0.02 1.34 16 13 C -0.15 -2.40 6.11 -24.90 -0.15 -2.55 16 14 C 0.22 4.54 0.70 -89.50 -0.06 4.48 16 15 O -0.56 -11.53 8.53 -35.23 -0.30 -11.83 16 16 C -0.55 -14.03 8.88 -34.44 -0.31 -14.33 16 17 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 19 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 20 Si 0.95 23.40 24.92 -169.99 -4.24 19.17 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.32 -8.29 7.11 56.52 0.40 -7.89 16 23 H -0.27 -6.77 5.42 56.52 0.31 -6.47 16 24 C 0.11 2.34 5.89 -2.41 -0.01 2.32 16 25 C -0.14 -1.67 5.38 -26.66 -0.14 -1.81 16 26 C 0.52 6.83 8.02 -10.86 -0.09 6.74 16 27 O -0.54 -8.61 17.60 5.55 0.10 -8.51 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.81 7.93 -51.93 -0.41 0.39 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.40 6.97 -51.93 -0.36 1.04 16 37 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 40 H 0.08 1.31 7.98 -51.93 -0.41 0.89 16 41 H 0.37 6.54 8.99 45.56 0.41 6.94 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.08 1.68 8.03 -51.93 -0.42 1.26 16 44 H 0.08 1.82 6.50 -51.93 -0.34 1.49 16 45 H 0.11 1.45 7.90 -51.93 -0.41 1.04 16 46 H 0.11 1.09 7.29 -51.93 -0.38 0.72 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -34.19 369.87 -5.90 -40.08 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.54 Total: 4.42 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 0.08 Total: 9.62 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.29 Total: -43.17 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.49 Total: -35.70 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.24 Total: 19.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.19 -5.90 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.097 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds