Wall clock time and date at job start Fri Apr 10 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42896 * 114.00152 * 2 1 4 4 C 1.53004 * 109.47262 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46798 * 65.00053 * 4 3 2 6 6 C 1.46763 * 124.35088 * 270.00010 * 5 4 3 7 7 C 1.54483 * 105.47160 * 197.03941 * 6 5 4 8 8 H 1.09004 * 110.96722 * 92.70271 * 7 6 5 9 9 C 1.50699 * 110.96783 * 216.42574 * 7 6 5 10 10 O 1.21284 * 120.00233 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99978 * 180.02562 * 9 7 6 12 12 C 1.47020 * 125.64744 * 0.02562 * 11 9 7 13 13 C 1.54321 * 107.26921 * 181.02659 * 12 11 9 14 14 C 1.55154 * 102.94587 * 22.19472 * 13 12 11 15 15 O 1.42894 * 111.00528 * 82.57217 * 14 13 12 16 16 C 1.50702 * 111.00658 * 206.42792 * 14 13 12 17 17 H 1.07999 * 120.00065 * 24.82005 * 16 14 13 18 18 C 1.37879 * 119.99792 * 204.82747 * 16 14 13 19 19 N 1.31517 * 119.99699 * 173.51557 * 18 16 14 20 20 Si 1.86800 * 119.99988 * 353.51222 * 18 16 14 21 21 H 1.48497 * 109.46805 * 87.32851 * 20 18 16 22 22 H 1.48502 * 109.46892 * 207.32462 * 20 18 16 23 23 H 1.48498 * 109.47222 * 327.32417 * 20 18 16 24 24 C 1.47425 * 125.64729 * 179.72253 * 11 9 7 25 25 C 1.54775 * 101.69344 * 334.39239 * 7 6 5 26 26 C 1.34418 * 124.34887 * 90.02913 * 5 4 3 27 27 O 1.21284 * 124.94179 * 359.53185 * 26 5 4 28 28 H 1.08996 * 109.47299 * 299.99682 * 1 2 3 29 29 H 1.09007 * 109.47463 * 59.99816 * 1 2 3 30 30 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47018 * 60.00447 * 3 2 1 32 32 H 1.08996 * 109.47122 * 299.99954 * 3 2 1 33 33 H 1.09001 * 109.47183 * 305.00428 * 4 3 2 34 34 H 1.08995 * 109.47248 * 185.00067 * 4 3 2 35 35 H 1.08996 * 110.24643 * 316.03815 * 6 5 4 36 36 H 1.08999 * 110.24342 * 77.95356 * 6 5 4 37 37 H 1.08998 * 109.88610 * 300.44227 * 12 11 9 38 38 H 1.09002 * 109.88121 * 61.60916 * 12 11 9 39 39 H 1.09003 * 110.72283 * 140.56332 * 13 12 11 40 40 H 1.09000 * 110.72144 * 263.83052 * 13 12 11 41 41 H 0.96701 * 114.00032 * 56.21007 * 15 14 13 42 42 H 0.96997 * 119.99744 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.36339 * 274.74043 * 24 11 9 44 44 H 1.09004 * 110.36910 * 37.06821 * 24 11 9 45 45 H 1.08996 * 110.61601 * 266.39985 * 25 7 6 46 46 H 1.09004 * 110.42674 * 143.70946 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1390 -0.8816 -1.4461 7 6 5.0110 -1.0310 -2.7126 8 1 6.0674 -1.0999 -2.4529 9 6 4.5797 -2.2235 -3.5267 10 8 3.6557 -2.9129 -3.1500 11 7 5.2207 -2.5239 -4.6736 12 6 6.3515 -1.7774 -5.2441 13 6 6.7366 -2.4703 -6.5681 14 6 5.4395 -3.2295 -6.9532 15 8 4.5154 -2.3624 -7.6136 16 6 5.7507 -4.4332 -7.8049 17 1 6.7227 -4.9002 -7.7452 18 6 4.7945 -4.9382 -8.6604 19 7 5.1044 -5.9062 -9.4950 20 14 3.0592 -4.2474 -8.6338 21 1 2.9787 -3.0761 -9.5431 22 1 2.1041 -5.2911 -9.0853 23 1 2.7151 -3.8261 -7.2521 24 6 4.9081 -3.6593 -5.5605 25 6 4.7046 0.2883 -3.4618 26 6 4.2851 1.2452 -2.3678 27 8 4.2302 2.4513 -2.4833 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8507 0.5684 0.8427 34 1 3.9784 2.1764 0.0902 35 1 4.6430 -1.3240 -0.5869 36 1 3.1680 -1.3532 -1.5973 37 1 6.0552 -0.7465 -5.4377 38 1 7.1957 -1.7994 -4.5549 39 1 6.9924 -1.7330 -7.3291 40 1 7.5600 -3.1675 -6.4132 41 1 4.8753 -1.9294 -8.3998 42 1 4.4316 -6.2617 -10.0965 43 1 5.4186 -4.5595 -5.2185 44 1 3.8314 -3.8245 -5.6003 45 1 3.8930 0.1449 -4.1751 46 1 5.5979 0.6549 -3.9675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:35 Heat of formation + Delta-G solvation = -177.937678 kcal Electronic energy + Delta-G solvation = -29129.888706 eV Core-core repulsion = 25018.915015 eV Total energy + Delta-G solvation = -4110.973691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.98402 -40.74656 -39.21159 -38.83081 -37.26627 -36.36914 -34.47948 -34.40551 -31.89921 -30.48435 -29.88324 -28.78032 -27.44867 -26.95198 -24.82851 -24.07001 -23.10340 -21.56825 -20.61217 -20.09661 -19.43113 -18.63149 -18.03158 -17.52847 -17.20800 -17.16106 -16.77505 -16.61642 -16.37915 -16.16398 -16.00094 -15.69487 -15.29527 -15.01097 -14.67405 -14.56409 -14.24686 -14.07635 -13.85314 -13.74680 -13.50483 -13.34118 -13.18581 -13.08585 -12.96049 -12.56813 -12.47897 -12.38383 -12.33664 -12.11064 -12.09919 -11.91392 -11.27916 -11.19171 -10.84136 -10.68109 -10.64433 -10.30706 -9.78662 -9.56831 -8.36789 -6.48139 1.42432 1.43116 1.49720 1.55325 1.70356 1.80726 2.10425 2.41016 2.80918 2.96728 3.13184 3.32868 3.44243 3.67597 3.83404 3.87198 4.01741 4.07988 4.13003 4.30330 4.31237 4.35382 4.42421 4.47853 4.49090 4.52317 4.54492 4.60608 4.71437 4.77188 4.79903 4.82305 4.91322 4.94717 5.03502 5.21560 5.29260 5.36068 5.46708 5.56910 5.96732 6.07348 6.16667 6.58700 6.62725 7.00951 7.03195 7.11855 7.32238 8.75899 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018488 B = 0.003273 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.142876 B = 8553.821641 C = 9181.087771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.040 3.960 4 C 0.124 3.876 5 N -0.607 5.607 6 C 0.125 3.875 7 C -0.104 4.104 8 H 0.154 0.846 9 C 0.530 3.470 10 O -0.587 6.587 11 N -0.608 5.608 12 C 0.100 3.900 13 C -0.140 4.140 14 C 0.212 3.788 15 O -0.564 6.564 16 C -0.541 4.541 17 H 0.056 0.944 18 C 0.030 3.970 19 N -0.932 5.932 20 Si 1.000 3.000 21 H -0.276 1.276 22 H -0.341 1.341 23 H -0.280 1.280 24 C 0.117 3.883 25 C -0.137 4.137 26 C 0.518 3.482 27 O -0.570 6.570 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.032 0.968 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.385 0.615 42 H 0.266 0.734 43 H 0.071 0.929 44 H 0.040 0.960 45 H 0.094 0.906 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 16.201 19.490 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.003 3.997 5 N -0.339 5.339 6 C 0.002 3.998 7 C -0.125 4.125 8 H 0.172 0.828 9 C 0.319 3.681 10 O -0.468 6.468 11 N -0.340 5.340 12 C -0.021 4.021 13 C -0.178 4.178 14 C 0.172 3.828 15 O -0.374 6.374 16 C -0.579 4.579 17 H 0.074 0.926 18 C -0.171 4.171 19 N -0.570 5.570 20 Si 0.836 3.164 21 H -0.203 1.203 22 H -0.274 1.274 23 H -0.207 1.207 24 C -0.006 4.006 25 C -0.178 4.178 26 C 0.307 3.693 27 O -0.450 6.450 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.051 0.949 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.235 0.765 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.112 0.888 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.161 16.052 20.133 25.749 hybrid contribution -1.090 -0.223 -1.085 1.554 sum -1.251 15.829 19.048 24.798 Atomic orbital electron populations 1.22841 0.80045 1.03373 1.00512 1.87882 1.20956 1.28329 1.95522 1.23104 0.94595 0.84928 1.01084 1.21687 0.91982 1.00552 0.85475 1.48316 1.65323 1.07762 1.12487 1.21950 1.00545 0.79926 0.97370 1.22213 1.04248 0.91194 0.94835 0.82796 1.20377 0.81403 0.86060 0.80232 1.90695 1.31141 1.54086 1.70839 1.48662 1.34264 1.29310 1.21791 1.22375 0.88270 0.96132 0.95347 1.23180 0.97790 0.99984 0.96843 1.20153 0.86623 0.87849 0.88206 1.86086 1.43263 1.62443 1.45629 1.21472 1.00356 1.13697 1.22365 0.92599 1.25757 1.02812 0.94471 0.94021 1.70060 1.36024 1.28441 1.22502 0.84838 0.78384 0.74956 0.78245 1.20274 1.27362 1.20714 1.22587 0.99584 0.89037 0.89395 1.22354 1.05594 0.92605 0.97214 1.21010 0.75925 0.87726 0.84644 1.90699 1.56332 1.15017 1.82966 0.92134 0.94679 0.89314 0.89607 0.94922 0.86958 0.87501 0.87349 0.91322 0.89233 0.88115 0.88219 0.90245 0.76474 0.92486 0.91088 0.94130 0.88816 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -8.59 10.53 -148.98 -1.57 -10.16 16 3 C 0.04 0.68 6.28 71.98 0.45 1.13 16 4 C 0.12 1.90 6.32 86.38 0.55 2.44 16 5 N -0.61 -12.16 2.88 -817.99 -2.36 -14.51 16 6 C 0.13 2.55 6.58 86.83 0.57 3.12 16 7 C -0.10 -2.05 2.92 -10.43 -0.03 -2.08 16 8 H 0.15 1.90 8.14 -2.38 -0.02 1.88 16 9 C 0.53 16.28 7.10 87.66 0.62 16.90 16 10 O -0.59 -23.47 15.76 -3.04 -0.05 -23.52 16 11 N -0.61 -19.19 3.32 -811.35 -2.70 -21.89 16 12 C 0.10 2.27 6.25 86.73 0.54 2.82 16 13 C -0.14 -4.03 6.11 31.78 0.19 -3.83 16 14 C 0.21 8.55 0.70 -10.07 -0.01 8.54 16 15 O -0.56 -22.35 8.53 -148.98 -1.27 -23.62 16 16 C -0.54 -27.65 8.88 25.60 0.23 -27.42 16 17 H 0.06 3.11 7.99 -2.91 -0.02 3.09 16 18 C 0.03 1.65 5.46 84.65 0.46 2.11 16 19 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 20 Si 1.00 49.32 24.92 68.60 1.71 51.03 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.34 -17.54 7.11 99.48 0.71 -16.83 16 23 H -0.28 -14.26 5.42 99.48 0.54 -13.72 16 24 C 0.12 4.82 5.89 86.93 0.51 5.33 16 25 C -0.14 -2.77 5.38 30.64 0.16 -2.61 16 26 C 0.52 12.35 8.02 87.90 0.70 13.06 16 27 O -0.57 -17.33 17.60 -3.04 -0.05 -17.38 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.48 7.93 -2.39 -0.02 1.46 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.89 6.97 -2.39 -0.02 1.88 16 37 H 0.09 1.65 6.54 -2.39 -0.02 1.64 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 2.42 8.12 -2.39 -0.02 2.40 16 40 H 0.08 2.33 7.98 -2.39 -0.02 2.32 16 41 H 0.39 12.61 8.99 -74.06 -0.67 11.95 16 42 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 43 H 0.07 3.00 8.03 -2.39 -0.02 2.98 16 44 H 0.04 1.95 6.50 -2.39 -0.02 1.94 16 45 H 0.09 2.27 7.90 -2.39 -0.02 2.25 16 46 H 0.14 2.02 7.29 -2.39 -0.02 2.01 16 Total: -1.00 -78.26 369.87 0.39 -77.87 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.16 Total: 16.35 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 6.21 Total: 21.24 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -4.75 Total: -91.82 kcal Atomic # 8 Polarization: -71.74 SS G_CDS: -2.94 Total: -74.68 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.71 Total: 51.03 kcal Total: -78.26 0.39 -77.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.067 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds