Wall clock time and date at job start Fri Apr 10 2020 18:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99988 * 2 1 4 4 C 1.53001 * 109.46914 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47201 * 65.00033 * 4 3 2 6 6 C 1.46496 * 119.99896 * 269.99926 * 5 4 3 7 7 C 1.50705 * 109.47066 * 269.99622 * 6 5 4 8 8 H 1.08001 * 119.99987 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00127 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00037 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00065 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47380 * 89.99525 * 11 9 7 13 13 H 1.48502 * 109.46914 * 210.00057 * 11 9 7 14 14 H 1.48507 * 109.46856 * 329.99469 * 11 9 7 15 15 C 1.34777 * 119.99832 * 89.99461 * 5 4 3 16 16 O 1.21278 * 119.99854 * 179.97438 * 15 5 4 17 17 C 1.50703 * 120.00161 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.46912 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47060 * 179.97438 * 18 17 15 20 20 N 1.46500 * 109.47473 * 180.02562 * 19 18 17 21 21 C 1.33875 * 122.76488 * 269.71158 * 20 19 18 22 22 O 1.21230 * 125.39200 * 359.97438 * 21 20 19 23 23 C 1.51315 * 109.20750 * 179.83865 * 21 20 19 24 24 C 1.54230 * 103.55426 * 0.38916 * 23 21 20 25 25 C 1.33875 * 122.75903 * 89.99982 * 20 19 18 26 26 O 1.21226 * 125.40090 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47005 * 299.99912 * 1 2 3 29 29 H 1.08992 * 109.47459 * 60.00102 * 1 2 3 30 30 H 1.08997 * 109.47181 * 60.00162 * 3 2 1 31 31 H 1.09006 * 109.46828 * 299.99988 * 3 2 1 32 32 H 1.08996 * 109.47448 * 304.99811 * 4 3 2 33 33 H 1.09003 * 109.47167 * 184.99819 * 4 3 2 34 34 H 1.08998 * 109.47205 * 29.99486 * 6 5 4 35 35 H 1.08997 * 109.47416 * 150.00347 * 6 5 4 36 36 H 0.97001 * 119.99958 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46980 * 59.99654 * 17 15 5 38 38 H 1.08992 * 109.47158 * 299.99760 * 17 15 5 39 39 H 1.09002 * 109.47398 * 300.00078 * 18 17 15 40 40 H 1.09001 * 109.47194 * 60.00258 * 18 17 15 41 41 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 42 42 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 43 43 H 1.08998 * 110.79380 * 241.77795 * 23 21 20 44 44 H 1.09002 * 110.54273 * 118.87508 * 23 21 20 45 45 H 1.08995 * 110.60329 * 241.25892 * 24 23 21 46 46 H 1.08997 * 110.60287 * 118.29489 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2978 -0.9450 8 1 6.2195 -0.5460 -0.6539 9 6 5.8603 -2.6289 -0.9518 10 7 7.0782 -2.9830 -0.6042 11 14 4.6172 -3.9294 -1.4547 12 1 4.7023 -4.1552 -2.9199 13 1 4.9112 -5.1976 -0.7403 14 1 3.2497 -3.4690 -1.1034 15 6 4.2614 1.3337 -2.3219 16 8 4.6262 0.8203 -3.3583 17 6 4.1286 2.8320 -2.2291 18 6 4.5108 3.4618 -3.5701 19 6 4.3754 4.9829 -3.4761 20 7 4.7408 5.5860 -4.7602 21 6 5.9912 5.9637 -5.0536 22 8 6.9478 5.8579 -4.3166 23 6 6.0217 6.5406 -6.4522 24 6 4.5548 6.4388 -6.9173 25 6 3.8506 5.8099 -5.7348 26 8 2.6680 5.5495 -5.6791 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.3852 -1.3629 -0.6734 35 1 3.9120 -1.2115 -2.3669 36 1 7.3311 -3.9194 -0.6093 37 1 4.7912 3.2079 -1.4495 38 1 3.0982 3.0911 -1.9862 39 1 5.5414 3.2027 -3.8126 40 1 3.8485 3.0860 -4.3499 41 1 3.3447 5.2416 -3.2338 42 1 5.0374 5.3592 -2.6962 43 1 6.6713 5.9516 -7.0996 44 1 6.3457 7.5811 -6.4297 45 1 4.4746 5.7992 -7.7962 46 1 4.1483 7.4289 -7.1237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:15 Heat of formation + Delta-G solvation = -144.561261 kcal Electronic energy + Delta-G solvation = -28231.902150 eV Core-core repulsion = 24122.375769 eV Total energy + Delta-G solvation = -4109.526381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11279 -39.31843 -38.80321 -37.62262 -36.19249 -35.18259 -34.74836 -32.67058 -32.04875 -29.84149 -28.24391 -26.65345 -26.50441 -26.02008 -23.16653 -22.68367 -22.65850 -21.39037 -19.74920 -18.40769 -17.51824 -17.27095 -16.90050 -16.73394 -16.64175 -16.08942 -15.57510 -15.45652 -15.16313 -14.88924 -14.66800 -14.48119 -14.26051 -14.21670 -13.99356 -13.57133 -13.21615 -13.08388 -12.58510 -12.54994 -12.31304 -12.00784 -11.84190 -11.77560 -11.70547 -11.66764 -11.41165 -10.98278 -10.86332 -10.83247 -10.70667 -10.35885 -10.29711 -10.04209 -9.97742 -9.54288 -9.44940 -8.97155 -8.48995 -7.65076 -5.99853 -3.97335 1.23024 2.22970 2.44041 3.35913 3.37492 3.43117 3.47829 3.72771 3.80421 3.88010 3.96509 4.05176 4.43729 4.49489 4.74844 4.77293 4.93089 5.04016 5.13315 5.17026 5.18044 5.21566 5.24545 5.31385 5.34069 5.38407 5.40630 5.47277 5.49363 5.57380 5.57894 5.72692 5.79867 6.04666 6.19426 6.29126 6.57211 6.96285 7.03431 7.10288 7.30966 7.42649 7.49691 7.73314 8.32839 8.56152 8.99410 9.05228 9.61526 11.13657 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.003117 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.014717 B = 8979.592218 C =10225.321689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.585 5.585 6 C 0.219 3.781 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.506 3.494 16 O -0.540 6.540 17 C -0.137 4.137 18 C -0.117 4.117 19 C 0.098 3.902 20 N -0.573 5.573 21 C 0.524 3.476 22 O -0.476 6.476 23 C -0.158 4.158 24 C -0.157 4.157 25 C 0.525 3.475 26 O -0.481 6.481 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 22.215 -6.587 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.035 4.035 4 C -0.013 4.013 5 N -0.316 5.316 6 C 0.099 3.901 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.540 5.540 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.292 3.708 16 O -0.417 6.417 17 C -0.178 4.178 18 C -0.156 4.156 19 C -0.023 4.023 20 N -0.316 5.316 21 C 0.313 3.687 22 O -0.347 6.347 23 C -0.197 4.197 24 C -0.197 4.197 25 C 0.314 3.686 26 O -0.353 6.353 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.761 21.377 -6.644 24.422 hybrid contribution -0.758 -0.585 -0.044 0.958 sum -10.519 20.792 -6.689 24.242 Atomic orbital electron populations 1.22706 0.81936 1.02558 0.99326 1.88064 1.18846 1.27258 1.95190 1.23153 0.95325 0.85316 0.99727 1.21549 0.91035 0.99373 0.89366 1.47841 1.64672 1.08927 1.10188 1.19667 0.97612 0.75035 0.97787 1.21378 0.96190 0.93526 1.45370 0.90924 1.24832 0.95163 0.98357 0.94681 1.69906 1.18191 1.17178 1.48705 0.86867 0.82541 0.81322 0.79180 1.20102 1.21216 1.18641 1.20275 0.78061 0.88448 0.83970 1.90669 1.46465 1.75059 1.29540 1.21614 1.03130 0.94187 0.98848 1.21613 1.04096 0.92032 0.97871 1.21888 1.02735 0.94300 0.83361 1.46773 1.11355 1.55642 1.17808 1.20846 0.81699 0.76436 0.89742 1.90815 1.36883 1.51852 1.55145 1.22480 0.98019 1.05126 0.94099 1.22481 0.94420 1.04635 0.98174 1.20840 0.86076 0.76854 0.84800 1.90790 1.14220 1.49491 1.80756 0.89877 0.94482 0.94490 0.92797 0.93592 0.88746 0.89643 0.93975 0.95081 0.92710 0.88926 0.89482 0.90319 0.90656 0.88875 0.88684 0.86003 0.86224 0.86069 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.11 9.53 -35.23 -0.34 -6.45 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.11 1.75 5.62 -4.04 -0.02 1.72 16 5 N -0.59 -12.29 2.42 -175.06 -0.42 -12.71 16 6 C 0.22 5.63 4.05 -5.19 -0.02 5.61 16 7 C -0.53 -15.64 9.94 -34.44 -0.34 -15.98 16 8 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -28.60 13.96 55.43 0.77 -27.82 16 11 Si 0.87 22.55 27.47 -169.99 -4.67 17.88 16 12 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 15 C 0.51 10.39 7.67 -10.98 -0.08 10.30 16 16 O -0.54 -13.61 15.56 5.56 0.09 -13.52 16 17 C -0.14 -1.91 4.25 -27.88 -0.12 -2.03 16 18 C -0.12 -1.64 4.83 -26.73 -0.13 -1.76 16 19 C 0.10 1.04 5.56 -4.04 -0.02 1.02 16 20 N -0.57 -5.80 2.55 -115.34 -0.29 -6.09 16 21 C 0.52 5.14 8.08 -11.09 -0.09 5.05 16 22 O -0.48 -6.52 17.47 5.60 0.10 -6.42 16 23 C -0.16 -0.74 7.03 -26.94 -0.19 -0.93 16 24 C -0.16 -0.71 7.03 -26.94 -0.19 -0.90 16 25 C 0.53 4.97 8.07 -11.08 -0.09 4.88 16 26 O -0.48 -6.24 17.48 5.60 0.10 -6.14 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.57 7.30 -51.93 -0.38 0.19 16 32 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 33 H 0.09 1.03 6.44 -51.93 -0.33 0.70 16 34 H 0.04 1.07 6.17 -51.93 -0.32 0.75 16 35 H 0.03 0.86 6.85 -51.93 -0.36 0.51 16 36 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 37 H 0.09 1.12 7.40 -51.93 -0.38 0.73 16 38 H 0.09 0.97 7.26 -51.93 -0.38 0.60 16 39 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 40 H 0.07 1.17 8.10 -51.93 -0.42 0.74 16 41 H 0.09 0.88 7.83 -51.93 -0.41 0.48 16 42 H 0.09 0.94 7.82 -51.93 -0.41 0.53 16 43 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -40.69 384.92 -6.11 -46.80 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -7.20 Total: -2.65 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -0.05 Total: 11.33 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.06 Total: -46.63 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.05 Total: -32.53 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -40.69 -6.11 -46.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.759 kcal (2) G-P(sol) polarization free energy of solvation -40.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds