Wall clock time and date at job start Fri Apr 10 2020 18:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99988 * 2 1 4 4 C 1.53001 * 109.46914 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47201 * 65.00033 * 4 3 2 6 6 C 1.46496 * 119.99896 * 269.99926 * 5 4 3 7 7 C 1.50705 * 109.47066 * 269.99622 * 6 5 4 8 8 H 1.08001 * 119.99987 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00127 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00037 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00065 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47380 * 89.99525 * 11 9 7 13 13 H 1.48502 * 109.46914 * 210.00057 * 11 9 7 14 14 H 1.48507 * 109.46856 * 329.99469 * 11 9 7 15 15 C 1.34777 * 119.99832 * 89.99461 * 5 4 3 16 16 O 1.21278 * 119.99854 * 179.97438 * 15 5 4 17 17 C 1.50703 * 120.00161 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.46912 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47060 * 179.97438 * 18 17 15 20 20 N 1.46500 * 109.47473 * 180.02562 * 19 18 17 21 21 C 1.33875 * 122.76488 * 269.71158 * 20 19 18 22 22 O 1.21230 * 125.39200 * 359.97438 * 21 20 19 23 23 C 1.51315 * 109.20750 * 179.83865 * 21 20 19 24 24 C 1.54230 * 103.55426 * 0.38916 * 23 21 20 25 25 C 1.33875 * 122.75903 * 89.99982 * 20 19 18 26 26 O 1.21226 * 125.40090 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47005 * 299.99912 * 1 2 3 29 29 H 1.08992 * 109.47459 * 60.00102 * 1 2 3 30 30 H 1.08997 * 109.47181 * 60.00162 * 3 2 1 31 31 H 1.09006 * 109.46828 * 299.99988 * 3 2 1 32 32 H 1.08996 * 109.47448 * 304.99811 * 4 3 2 33 33 H 1.09003 * 109.47167 * 184.99819 * 4 3 2 34 34 H 1.08998 * 109.47205 * 29.99486 * 6 5 4 35 35 H 1.08997 * 109.47416 * 150.00347 * 6 5 4 36 36 H 0.97001 * 119.99958 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46980 * 59.99654 * 17 15 5 38 38 H 1.08992 * 109.47158 * 299.99760 * 17 15 5 39 39 H 1.09002 * 109.47398 * 300.00078 * 18 17 15 40 40 H 1.09001 * 109.47194 * 60.00258 * 18 17 15 41 41 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 42 42 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 43 43 H 1.08998 * 110.79380 * 241.77795 * 23 21 20 44 44 H 1.09002 * 110.54273 * 118.87508 * 23 21 20 45 45 H 1.08995 * 110.60329 * 241.25892 * 24 23 21 46 46 H 1.08997 * 110.60287 * 118.29489 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2978 -0.9450 8 1 6.2195 -0.5460 -0.6539 9 6 5.8603 -2.6289 -0.9518 10 7 7.0782 -2.9830 -0.6042 11 14 4.6172 -3.9294 -1.4547 12 1 4.7023 -4.1552 -2.9199 13 1 4.9112 -5.1976 -0.7403 14 1 3.2497 -3.4690 -1.1034 15 6 4.2614 1.3337 -2.3219 16 8 4.6262 0.8203 -3.3583 17 6 4.1286 2.8320 -2.2291 18 6 4.5108 3.4618 -3.5701 19 6 4.3754 4.9829 -3.4761 20 7 4.7408 5.5860 -4.7602 21 6 5.9912 5.9637 -5.0536 22 8 6.9478 5.8579 -4.3166 23 6 6.0217 6.5406 -6.4522 24 6 4.5548 6.4388 -6.9173 25 6 3.8506 5.8099 -5.7348 26 8 2.6680 5.5495 -5.6791 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.3852 -1.3629 -0.6734 35 1 3.9120 -1.2115 -2.3669 36 1 7.3311 -3.9194 -0.6093 37 1 4.7912 3.2079 -1.4495 38 1 3.0982 3.0911 -1.9862 39 1 5.5414 3.2027 -3.8126 40 1 3.8485 3.0860 -4.3499 41 1 3.3447 5.2416 -3.2338 42 1 5.0374 5.3592 -2.6962 43 1 6.6713 5.9516 -7.0996 44 1 6.3457 7.5811 -6.4297 45 1 4.4746 5.7992 -7.7962 46 1 4.1483 7.4289 -7.1237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:14 Heat of formation + Delta-G solvation = -175.808654 kcal Electronic energy + Delta-G solvation = -28233.257139 eV Core-core repulsion = 24122.375769 eV Total energy + Delta-G solvation = -4110.881370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.83717 -40.89800 -39.63585 -38.78435 -37.08648 -36.63580 -35.83845 -34.77669 -33.07015 -31.39329 -29.74282 -27.94498 -27.09100 -27.08647 -24.71486 -24.01995 -23.28132 -22.87662 -20.54512 -19.88812 -19.13941 -18.46656 -18.12848 -17.68746 -17.54052 -17.35926 -16.98037 -16.84873 -16.34936 -16.08358 -15.74058 -15.68988 -15.27736 -15.02878 -14.88424 -14.80929 -14.72779 -14.34950 -13.86234 -13.76519 -13.52553 -13.34873 -13.21622 -13.04029 -12.88740 -12.77813 -12.62191 -12.46519 -12.10796 -12.04448 -11.98793 -11.86048 -11.75240 -11.61552 -11.07056 -10.91278 -10.83924 -10.67651 -10.53102 -9.41211 -8.35736 -6.39322 0.50439 1.29351 1.32322 1.43452 1.51293 1.74726 1.77560 2.28968 2.30917 2.94874 3.00302 3.23619 3.28973 3.52810 3.64897 3.81439 3.83130 4.09559 4.14832 4.20246 4.28413 4.30053 4.37149 4.44740 4.50518 4.54426 4.56339 4.60187 4.65663 4.77328 4.86042 4.91015 4.91173 4.93659 4.95593 4.97988 5.00064 5.13377 5.46411 5.63060 5.84122 6.22921 6.32682 6.32801 6.61208 6.72677 6.75373 7.20905 7.40957 8.81278 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.003117 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.014717 B = 8979.592218 C =10225.321689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.046 3.954 4 C 0.102 3.898 5 N -0.593 5.593 6 C 0.235 3.765 7 C -0.534 4.534 8 H 0.030 0.970 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.271 1.271 14 H -0.244 1.244 15 C 0.492 3.508 16 O -0.600 6.600 17 C -0.122 4.122 18 C -0.108 4.108 19 C 0.101 3.899 20 N -0.581 5.581 21 C 0.516 3.484 22 O -0.525 6.525 23 C -0.143 4.143 24 C -0.142 4.142 25 C 0.519 3.481 26 O -0.522 6.522 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.049 0.951 35 H 0.006 0.994 36 H 0.268 0.732 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.151 0.849 45 H 0.139 0.861 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 24.604 -6.989 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.031 4.031 4 C -0.020 4.020 5 N -0.323 5.323 6 C 0.113 3.887 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.186 4.186 10 N -0.585 5.585 11 Si 0.767 3.233 12 H -0.203 1.203 13 H -0.196 1.196 14 H -0.167 1.167 15 C 0.282 3.718 16 O -0.482 6.482 17 C -0.162 4.162 18 C -0.147 4.147 19 C -0.021 4.021 20 N -0.324 5.324 21 C 0.308 3.692 22 O -0.399 6.399 23 C -0.182 4.182 24 C -0.181 4.181 25 C 0.310 3.690 26 O -0.396 6.396 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.156 0.844 44 H 0.169 0.831 45 H 0.157 0.843 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.040 23.819 -7.020 27.597 hybrid contribution 0.002 -1.287 0.117 1.293 sum -12.038 22.532 -6.903 26.462 Atomic orbital electron populations 1.22861 0.79942 1.03158 1.00889 1.87992 1.21200 1.29119 1.95573 1.23193 0.92906 0.84842 1.02191 1.21948 0.93539 1.00490 0.86060 1.47937 1.64683 1.07272 1.12447 1.19177 0.94958 0.78621 0.95967 1.21616 0.97510 0.92974 1.45186 0.95159 1.25795 0.97324 1.00947 0.94536 1.70045 1.20377 1.18087 1.50003 0.85761 0.80512 0.78446 0.78559 1.20250 1.19590 1.16718 1.21458 0.76418 0.91107 0.82807 1.90631 1.49037 1.76689 1.31834 1.21626 1.06230 0.88721 0.99635 1.21468 1.01324 0.94609 0.97298 1.21793 1.04037 0.91682 0.84548 1.47006 1.12067 1.55387 1.17891 1.21797 0.80701 0.75404 0.91330 1.90789 1.38151 1.53945 1.57000 1.22603 0.98574 1.06714 0.90345 1.22605 0.93267 1.06103 0.96141 1.21736 0.85569 0.75947 0.85706 1.90766 1.15954 1.51318 1.81574 0.89950 0.92009 0.93713 0.88758 0.92367 0.90651 0.85632 0.93317 0.97576 0.92283 0.86265 0.85418 0.93738 0.92812 0.87164 0.87819 0.84432 0.83099 0.84312 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -12.88 9.53 -148.98 -1.42 -14.30 16 3 C 0.05 1.08 6.28 71.98 0.45 1.54 16 4 C 0.10 3.05 5.62 86.38 0.49 3.53 16 5 N -0.59 -25.16 2.42 -826.15 -2.00 -27.16 16 6 C 0.24 12.40 4.05 85.64 0.35 12.74 16 7 C -0.53 -33.17 9.94 25.60 0.25 -32.92 16 8 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 9 C 0.01 0.73 5.47 84.65 0.46 1.20 16 10 N -0.94 -61.98 13.96 21.45 0.30 -61.68 16 11 Si 0.94 47.50 27.47 68.60 1.88 49.39 16 12 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.24 -11.45 6.54 99.48 0.65 -10.79 16 15 C 0.49 20.62 7.67 87.66 0.67 21.30 16 16 O -0.60 -31.87 15.56 -3.02 -0.05 -31.92 16 17 C -0.12 -3.26 4.25 29.85 0.13 -3.13 16 18 C -0.11 -3.05 4.83 30.59 0.15 -2.90 16 19 C 0.10 2.05 5.56 86.38 0.48 2.53 16 20 N -0.58 -11.24 2.55 -756.66 -1.93 -13.17 16 21 C 0.52 9.61 8.08 87.99 0.71 10.32 16 22 O -0.52 -14.46 17.47 -2.87 -0.05 -14.51 16 23 C -0.14 -0.90 7.03 30.46 0.21 -0.69 16 24 C -0.14 -0.80 7.03 30.46 0.21 -0.59 16 25 C 0.52 9.01 8.07 87.99 0.71 9.72 16 26 O -0.52 -13.05 17.48 -2.86 -0.05 -13.10 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.24 7.30 -2.38 -0.02 1.22 16 32 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 33 H 0.13 2.66 6.44 -2.39 -0.02 2.64 16 34 H 0.05 2.50 6.17 -2.39 -0.01 2.48 16 35 H 0.01 0.35 6.85 -2.39 -0.02 0.34 16 36 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 37 H 0.12 2.60 7.40 -2.39 -0.02 2.58 16 38 H 0.13 2.42 7.26 -2.39 -0.02 2.40 16 39 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 40 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 41 H 0.11 1.87 7.83 -2.39 -0.02 1.85 16 42 H 0.10 1.93 7.82 -2.39 -0.02 1.91 16 43 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -97.53 384.92 4.13 -93.40 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.92 Total: 8.56 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 6.53 Total: 24.48 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.63 Total: -102.01 kcal Atomic # 8 Polarization: -72.26 SS G_CDS: -1.57 Total: -73.83 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.88 Total: 49.39 kcal Total: -97.53 4.13 -93.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.410 kcal (2) G-P(sol) polarization free energy of solvation -97.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds