Wall clock time and date at job start Fri Apr 10 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46515 * 2 1 4 4 O 1.45200 * 109.47069 * 240.00237 * 2 1 3 5 5 C 1.34228 * 117.00069 * 89.99955 * 4 2 1 6 6 O 1.20830 * 119.99786 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00123 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47492 * 179.97438 * 7 5 4 9 9 N 1.46496 * 109.47391 * 180.02562 * 8 7 5 10 10 C 1.46764 * 124.34995 * 269.72951 * 9 8 7 11 11 C 1.54651 * 105.38407 * 162.85231 * 10 9 8 12 12 C 1.54627 * 101.68476 * 25.76712 * 11 10 9 13 13 C 1.34412 * 124.34875 * 90.02628 * 9 8 7 14 14 O 1.21277 * 124.94420 * 0.42814 * 13 9 8 15 15 C 1.50697 * 109.47458 * 119.99576 * 2 1 3 16 16 O 1.21285 * 119.99525 * 99.94521 * 15 2 1 17 17 N 1.34773 * 120.00300 * 279.95072 * 15 2 1 18 18 C 1.46502 * 120.00246 * 4.36617 * 17 15 2 19 19 C 1.46499 * 120.00010 * 184.36949 * 17 15 2 20 20 C 1.50704 * 109.47231 * 269.99729 * 19 17 15 21 21 H 1.08005 * 119.99841 * 359.97438 * 20 19 17 22 22 C 1.37877 * 119.99975 * 179.97438 * 20 19 17 23 23 N 1.31521 * 119.99634 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00309 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47397 * 89.99795 * 24 22 20 26 26 H 1.48501 * 109.47057 * 209.99957 * 24 22 20 27 27 H 1.48504 * 109.46886 * 329.99711 * 24 22 20 28 28 H 1.09003 * 109.46983 * 294.33803 * 1 2 3 29 29 H 1.08997 * 109.47398 * 54.34143 * 1 2 3 30 30 H 1.09005 * 109.46839 * 174.34252 * 1 2 3 31 31 H 1.09003 * 109.47356 * 300.00111 * 7 5 4 32 32 H 1.09002 * 109.46684 * 59.99647 * 7 5 4 33 33 H 1.08994 * 109.47221 * 300.00349 * 8 7 5 34 34 H 1.09004 * 109.46585 * 60.00155 * 8 7 5 35 35 H 1.09000 * 110.24647 * 281.98343 * 10 9 8 36 36 H 1.09009 * 110.24701 * 43.97882 * 10 9 8 37 37 H 1.09000 * 111.19852 * 267.59104 * 11 10 9 38 38 H 1.08999 * 110.82438 * 143.77687 * 11 10 9 39 39 H 1.09004 * 110.48497 * 216.30935 * 12 11 10 40 40 H 1.09000 * 110.60120 * 93.71877 * 12 11 10 41 41 H 1.08998 * 109.47136 * 265.21180 * 18 17 15 42 42 H 1.09000 * 109.46737 * 25.20830 * 18 17 15 43 43 H 1.08995 * 109.47370 * 145.20515 * 18 17 15 44 44 H 1.09004 * 109.47512 * 29.99938 * 19 17 15 45 45 H 1.09001 * 109.47687 * 149.99779 * 19 17 15 46 46 H 0.96995 * 119.99941 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9973 1.2518 -2.2505 7 6 2.7193 -0.5769 -3.5492 8 6 2.8632 0.4891 -4.6372 9 7 3.3508 -0.1341 -5.8701 10 6 4.7687 -0.2788 -6.2201 11 6 4.8085 -1.3481 -7.3367 12 6 3.3958 -1.2126 -7.9507 13 6 2.5569 -0.6417 -6.8286 14 8 1.3445 -0.6418 -6.7985 15 6 2.0324 -0.7103 1.2305 16 8 2.4056 -1.8619 1.1559 17 7 2.0670 -0.0659 2.4137 18 6 1.5277 1.2917 2.5245 19 6 2.6438 -0.7231 3.5891 20 6 1.5661 -1.4819 4.3199 21 1 0.5527 -1.4748 3.9464 22 6 1.8738 -2.1850 5.4653 23 7 0.9331 -2.8466 6.1033 24 14 3.6262 -2.1966 6.1117 25 1 3.8138 -1.0645 7.0542 26 1 3.8847 -3.4769 6.8183 27 1 4.5735 -2.0577 4.9765 28 1 -0.3633 0.4235 0.9364 29 1 -0.3634 0.5991 -0.8349 30 1 -0.3633 -1.0227 -0.1013 31 1 3.6884 -1.0399 -3.3632 32 1 2.0104 -1.3371 -3.8773 33 1 1.8939 0.9517 -4.8231 34 1 3.5718 1.2496 -4.3092 35 1 5.1653 0.6680 -6.5865 36 1 5.3383 -0.6175 -5.3546 37 1 4.9599 -2.3450 -6.9226 38 1 5.5777 -1.1120 -8.0721 39 1 3.0159 -2.1886 -8.2526 40 1 3.4109 -0.5304 -8.8007 41 1 2.3341 2.0143 2.3990 42 1 0.7760 1.4483 1.7509 43 1 1.0719 1.4227 3.5058 44 1 3.4241 -1.4151 3.2722 45 1 3.0722 0.0285 4.2521 46 1 1.1496 -3.3416 6.9089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727912876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:24 Heat of formation + Delta-G solvation = -144.805376 kcal Electronic energy + Delta-G solvation = -27721.383318 eV Core-core repulsion = 23611.846351 eV Total energy + Delta-G solvation = -4109.536966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00459 -40.55912 -39.08187 -36.88075 -36.56532 -35.01986 -34.29700 -32.80007 -31.81832 -30.44900 -28.39448 -28.00908 -26.26112 -25.47482 -24.12851 -22.44007 -22.20689 -20.75791 -19.74265 -18.87955 -18.13697 -17.15962 -17.00117 -16.87564 -16.78310 -16.42019 -15.81064 -15.70866 -15.13389 -14.81019 -14.25432 -14.22317 -14.14531 -13.84442 -13.77275 -13.37148 -13.22449 -13.02354 -12.90591 -12.52278 -12.40263 -12.32584 -12.21711 -12.00111 -11.87114 -11.61490 -11.57851 -11.50060 -11.47125 -10.97864 -10.77989 -10.66683 -10.55825 -10.16874 -10.14159 -9.57695 -9.23904 -9.03462 -8.61867 -7.81782 -6.11004 -4.10234 2.04294 2.08046 2.29431 2.73389 3.14134 3.24925 3.33488 3.36920 3.77125 3.88512 3.97895 4.31108 4.37252 4.40404 4.51548 4.59673 4.66234 4.74934 4.96757 4.97130 5.01433 5.04927 5.09383 5.20617 5.21928 5.25776 5.36036 5.41655 5.46348 5.52481 5.64729 5.68692 5.77816 6.04126 6.05575 6.20093 6.34329 6.59147 6.67593 6.88684 7.21048 7.56010 7.59724 7.77009 8.08409 8.42506 8.79641 8.92501 9.48384 11.02285 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.002225 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.495025 B =12580.652414 C =13023.612086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 H 0.104 0.896 4 O -0.325 6.325 5 C 0.468 3.532 6 O -0.512 6.512 7 C -0.132 4.132 8 C 0.139 3.861 9 N -0.621 5.621 10 C 0.098 3.902 11 C -0.132 4.132 12 C -0.156 4.156 13 C 0.515 3.485 14 O -0.527 6.527 15 C 0.510 3.490 16 O -0.515 6.515 17 N -0.592 5.592 18 C 0.071 3.929 19 C 0.217 3.783 20 C -0.530 4.530 21 H 0.075 0.925 22 C 0.072 3.928 23 N -0.896 5.896 24 Si 0.875 3.125 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.264 1.264 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.029 0.971 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 8.800 -26.087 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 H 0.122 0.878 4 O -0.240 6.240 5 C 0.310 3.690 6 O -0.401 6.401 7 C -0.171 4.171 8 C 0.017 3.983 9 N -0.356 5.356 10 C -0.025 4.025 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.303 3.697 14 O -0.403 6.403 15 C 0.294 3.706 16 O -0.390 6.390 17 N -0.326 5.326 18 C -0.072 4.072 19 C 0.097 3.903 20 C -0.568 4.568 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.702 3.298 25 H -0.201 1.201 26 H -0.209 1.209 27 H -0.189 1.189 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.111 8.446 -25.818 28.349 hybrid contribution 0.777 0.071 0.704 1.051 sum 8.888 8.517 -25.114 27.968 Atomic orbital electron populations 1.22203 0.91937 1.04411 1.03888 1.22656 0.96246 0.97215 0.82521 0.87824 1.86631 1.76263 1.41513 1.19621 1.23482 0.74217 0.85799 0.85481 1.90656 1.48489 1.16554 1.84375 1.21749 1.04707 1.00803 0.89821 1.21120 1.02384 0.93375 0.81450 1.48305 1.07691 1.59988 1.19583 1.22202 0.81699 0.99600 0.98959 1.22642 0.96767 0.99830 0.97791 1.22343 0.95527 1.03859 0.97842 1.21020 0.87468 0.77337 0.83913 1.90760 1.12950 1.57479 1.79135 1.19792 0.80014 0.87014 0.83756 1.90711 1.47013 1.16204 1.85098 1.47757 1.59762 1.15531 1.09532 1.21896 0.98344 0.83259 1.03742 1.19718 0.95246 0.93111 0.82203 1.21303 0.96279 1.30412 1.08822 0.90653 1.24864 0.97151 0.94681 0.96354 1.69895 1.32761 1.32188 1.18561 0.86856 0.85525 0.77938 0.79481 1.20066 1.20877 1.18870 0.89388 0.91083 0.90456 0.87187 0.87078 0.88743 0.89023 0.90678 0.89966 0.89661 0.89014 0.87879 0.87739 0.93206 0.91622 0.90078 0.94092 0.95272 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.17 37.16 0.34 -2.06 16 2 C 0.07 1.18 2.13 -27.88 -0.06 1.12 16 3 H 0.10 1.52 6.34 -51.93 -0.33 1.19 16 4 O -0.33 -5.28 9.50 -45.65 -0.43 -5.72 16 5 C 0.47 6.22 7.93 36.00 0.29 6.50 16 6 O -0.51 -7.42 15.20 -18.75 -0.29 -7.70 16 7 C -0.13 -1.28 6.13 -27.89 -0.17 -1.45 16 8 C 0.14 1.22 5.23 -4.04 -0.02 1.20 16 9 N -0.62 -4.74 2.93 -172.31 -0.51 -5.25 16 10 C 0.10 0.40 7.35 -3.03 -0.02 0.38 16 11 C -0.13 -0.38 7.19 -25.01 -0.18 -0.56 16 12 C -0.16 -0.78 6.86 -26.74 -0.18 -0.97 16 13 C 0.51 4.88 8.02 -10.86 -0.09 4.79 16 14 O -0.53 -7.44 17.59 5.56 0.10 -7.35 16 15 C 0.51 10.72 6.93 -10.99 -0.08 10.64 16 16 O -0.52 -13.12 16.24 -13.20 -0.21 -13.34 16 17 N -0.59 -12.22 2.86 -182.95 -0.52 -12.74 16 18 C 0.07 1.08 9.89 59.85 0.59 1.67 16 19 C 0.22 5.28 4.22 -5.19 -0.02 5.26 16 20 C -0.53 -15.14 9.94 -34.44 -0.34 -15.49 16 21 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 22 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 24 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 28 H 0.09 1.19 6.22 -51.93 -0.32 0.87 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 34 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.27 8.14 -51.92 -0.42 -0.16 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.84 4.57 -51.93 -0.24 0.60 16 43 H 0.08 1.26 8.11 -51.93 -0.42 0.84 16 44 H 0.04 1.07 6.54 -51.93 -0.34 0.73 16 45 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -38.34 384.15 -7.12 -45.46 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.11 Total: -2.12 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -0.04 Total: 13.04 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.25 Total: -44.76 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.84 Total: -34.11 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.34 -7.12 -45.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727912876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.343 kcal (2) G-P(sol) polarization free energy of solvation -38.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds