Wall clock time and date at job start Fri Apr 10 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46515 * 2 1 4 4 O 1.45200 * 109.47069 * 240.00237 * 2 1 3 5 5 C 1.34228 * 117.00069 * 89.99955 * 4 2 1 6 6 O 1.20830 * 119.99786 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00123 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47492 * 179.97438 * 7 5 4 9 9 N 1.46496 * 109.47391 * 180.02562 * 8 7 5 10 10 C 1.46764 * 124.34995 * 269.72951 * 9 8 7 11 11 C 1.54651 * 105.38407 * 162.85231 * 10 9 8 12 12 C 1.54627 * 101.68476 * 25.76712 * 11 10 9 13 13 C 1.34412 * 124.34875 * 90.02628 * 9 8 7 14 14 O 1.21277 * 124.94420 * 0.42814 * 13 9 8 15 15 C 1.50697 * 109.47458 * 119.99576 * 2 1 3 16 16 O 1.21285 * 119.99525 * 99.94521 * 15 2 1 17 17 N 1.34773 * 120.00300 * 279.95072 * 15 2 1 18 18 C 1.46502 * 120.00246 * 4.36617 * 17 15 2 19 19 C 1.46499 * 120.00010 * 184.36949 * 17 15 2 20 20 C 1.50704 * 109.47231 * 269.99729 * 19 17 15 21 21 H 1.08005 * 119.99841 * 359.97438 * 20 19 17 22 22 C 1.37877 * 119.99975 * 179.97438 * 20 19 17 23 23 N 1.31521 * 119.99634 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00309 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47397 * 89.99795 * 24 22 20 26 26 H 1.48501 * 109.47057 * 209.99957 * 24 22 20 27 27 H 1.48504 * 109.46886 * 329.99711 * 24 22 20 28 28 H 1.09003 * 109.46983 * 294.33803 * 1 2 3 29 29 H 1.08997 * 109.47398 * 54.34143 * 1 2 3 30 30 H 1.09005 * 109.46839 * 174.34252 * 1 2 3 31 31 H 1.09003 * 109.47356 * 300.00111 * 7 5 4 32 32 H 1.09002 * 109.46684 * 59.99647 * 7 5 4 33 33 H 1.08994 * 109.47221 * 300.00349 * 8 7 5 34 34 H 1.09004 * 109.46585 * 60.00155 * 8 7 5 35 35 H 1.09000 * 110.24647 * 281.98343 * 10 9 8 36 36 H 1.09009 * 110.24701 * 43.97882 * 10 9 8 37 37 H 1.09000 * 111.19852 * 267.59104 * 11 10 9 38 38 H 1.08999 * 110.82438 * 143.77687 * 11 10 9 39 39 H 1.09004 * 110.48497 * 216.30935 * 12 11 10 40 40 H 1.09000 * 110.60120 * 93.71877 * 12 11 10 41 41 H 1.08998 * 109.47136 * 265.21180 * 18 17 15 42 42 H 1.09000 * 109.46737 * 25.20830 * 18 17 15 43 43 H 1.08995 * 109.47370 * 145.20515 * 18 17 15 44 44 H 1.09004 * 109.47512 * 29.99938 * 19 17 15 45 45 H 1.09001 * 109.47687 * 149.99779 * 19 17 15 46 46 H 0.96995 * 119.99941 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9973 1.2518 -2.2505 7 6 2.7193 -0.5769 -3.5492 8 6 2.8632 0.4891 -4.6372 9 7 3.3508 -0.1341 -5.8701 10 6 4.7687 -0.2788 -6.2201 11 6 4.8085 -1.3481 -7.3367 12 6 3.3958 -1.2126 -7.9507 13 6 2.5569 -0.6417 -6.8286 14 8 1.3445 -0.6418 -6.7985 15 6 2.0324 -0.7103 1.2305 16 8 2.4056 -1.8619 1.1559 17 7 2.0670 -0.0659 2.4137 18 6 1.5277 1.2917 2.5245 19 6 2.6438 -0.7231 3.5891 20 6 1.5661 -1.4819 4.3199 21 1 0.5527 -1.4748 3.9464 22 6 1.8738 -2.1850 5.4653 23 7 0.9331 -2.8466 6.1033 24 14 3.6262 -2.1966 6.1117 25 1 3.8138 -1.0645 7.0542 26 1 3.8847 -3.4769 6.8183 27 1 4.5735 -2.0577 4.9765 28 1 -0.3633 0.4235 0.9364 29 1 -0.3634 0.5991 -0.8349 30 1 -0.3633 -1.0227 -0.1013 31 1 3.6884 -1.0399 -3.3632 32 1 2.0104 -1.3371 -3.8773 33 1 1.8939 0.9517 -4.8231 34 1 3.5718 1.2496 -4.3092 35 1 5.1653 0.6680 -6.5865 36 1 5.3383 -0.6175 -5.3546 37 1 4.9599 -2.3450 -6.9226 38 1 5.5777 -1.1120 -8.0721 39 1 3.0159 -2.1886 -8.2526 40 1 3.4109 -0.5304 -8.8007 41 1 2.3341 2.0143 2.3990 42 1 0.7760 1.4483 1.7509 43 1 1.0719 1.4227 3.5058 44 1 3.4241 -1.4151 3.2722 45 1 3.0722 0.0285 4.2521 46 1 1.1496 -3.3416 6.9089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727912876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:24 Heat of formation + Delta-G solvation = -171.114286 kcal Electronic energy + Delta-G solvation = -27722.524158 eV Core-core repulsion = 23611.846351 eV Total energy + Delta-G solvation = -4110.677806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07208 -41.33465 -40.59700 -37.91126 -37.47101 -36.75099 -34.97314 -34.80301 -33.24600 -31.17821 -30.24501 -28.44040 -27.68334 -26.45151 -25.54790 -23.90502 -22.73226 -21.90623 -20.47823 -20.35336 -19.22275 -19.12774 -18.24440 -17.85314 -17.70141 -17.35449 -17.15949 -16.64888 -16.50309 -16.18523 -15.85821 -15.26497 -14.89317 -14.78136 -14.61946 -14.54749 -14.35299 -14.19709 -14.01009 -13.74499 -13.63540 -13.50313 -13.40830 -13.21213 -13.14929 -12.91485 -12.65595 -12.42312 -12.38917 -12.19806 -12.07756 -11.97133 -11.83119 -11.76994 -11.75946 -10.88866 -10.82715 -10.71674 -9.83989 -9.53560 -8.34312 -6.40114 0.97598 1.09588 1.32547 1.37491 1.47628 1.51242 1.55752 1.98026 2.31216 2.38015 2.99301 3.32929 3.42768 3.46822 3.65196 3.70486 3.75923 3.81231 3.89594 4.09783 4.20830 4.24500 4.31241 4.47258 4.52051 4.54409 4.59724 4.67736 4.72809 4.74020 4.80976 4.84129 4.89892 4.92391 5.03456 5.13505 5.24041 5.26289 5.42270 5.48867 5.50384 6.09192 6.20081 6.42768 6.55098 6.61277 7.09384 7.12243 7.26538 8.82565 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.002225 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.495025 B =12580.652414 C =13023.612086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 H 0.128 0.872 4 O -0.346 6.346 5 C 0.468 3.532 6 O -0.522 6.522 7 C -0.122 4.122 8 C 0.142 3.858 9 N -0.619 5.619 10 C 0.091 3.909 11 C -0.121 4.121 12 C -0.150 4.150 13 C 0.499 3.501 14 O -0.587 6.587 15 C 0.501 3.499 16 O -0.573 6.573 17 N -0.598 5.598 18 C 0.063 3.937 19 C 0.224 3.776 20 C -0.538 4.538 21 H 0.029 0.971 22 C 0.009 3.991 23 N -0.945 5.945 24 Si 0.950 3.050 25 H -0.250 1.250 26 H -0.283 1.283 27 H -0.254 1.254 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.022 0.978 45 H 0.058 0.942 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 10.606 -27.312 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.145 0.855 4 O -0.262 6.262 5 C 0.312 3.688 6 O -0.411 6.411 7 C -0.161 4.161 8 C 0.019 3.981 9 N -0.352 5.352 10 C -0.031 4.031 11 C -0.159 4.159 12 C -0.190 4.190 13 C 0.289 3.711 14 O -0.468 6.468 15 C 0.288 3.712 16 O -0.452 6.452 17 N -0.330 5.330 18 C -0.078 4.078 19 C 0.102 3.898 20 C -0.576 4.576 21 H 0.048 0.952 22 C -0.189 4.189 23 N -0.585 5.585 24 Si 0.772 3.228 25 H -0.174 1.174 26 H -0.208 1.208 27 H -0.178 1.178 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.040 0.960 45 H 0.076 0.924 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.055 10.320 -27.059 30.998 hybrid contribution -0.206 -0.467 1.035 1.155 sum 10.849 9.852 -26.024 29.866 Atomic orbital electron populations 1.22206 0.90565 1.03937 1.05303 1.22532 0.97040 0.97239 0.80861 0.85451 1.86649 1.76728 1.42578 1.20205 1.24088 0.73583 0.85692 0.85410 1.90641 1.49003 1.17047 1.84449 1.21802 1.05406 1.00743 0.88126 1.21016 1.01866 0.93411 0.81797 1.48468 1.09287 1.58825 1.18589 1.22534 0.79387 1.01066 1.00070 1.22687 0.95810 0.99679 0.97711 1.22388 0.95975 1.03933 0.96687 1.21888 0.87132 0.76841 0.85200 1.90718 1.15617 1.59898 1.80561 1.20639 0.78866 0.86560 0.85123 1.90669 1.49571 1.18771 1.86163 1.47857 1.59358 1.17277 1.08497 1.22228 1.00178 0.80917 1.04499 1.19435 0.93478 0.93387 0.83507 1.21523 0.95506 1.31278 1.09308 0.95247 1.25890 1.02341 0.94032 0.96631 1.70055 1.35538 1.33465 1.19398 0.85683 0.79114 0.78724 0.79271 1.17360 1.20842 1.17798 0.88547 0.88794 0.92150 0.84908 0.87700 0.91164 0.87341 0.88948 0.88635 0.89326 0.86273 0.87628 0.86205 0.89690 0.89175 0.90537 0.96006 0.92421 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 9.17 71.98 0.66 -3.89 16 2 C 0.08 2.59 2.13 29.85 0.06 2.65 16 3 H 0.13 3.43 6.34 -2.38 -0.02 3.41 16 4 O -0.35 -11.08 9.50 -45.28 -0.43 -11.51 16 5 C 0.47 11.97 7.93 71.23 0.56 12.54 16 6 O -0.52 -14.31 15.20 21.95 0.33 -13.98 16 7 C -0.12 -2.24 6.13 29.85 0.18 -2.06 16 8 C 0.14 2.35 5.23 86.38 0.45 2.80 16 9 N -0.62 -8.58 2.93 -817.65 -2.40 -10.98 16 10 C 0.09 0.46 7.35 86.89 0.64 1.10 16 11 C -0.12 -0.30 7.19 31.71 0.23 -0.07 16 12 C -0.15 -1.24 6.86 30.59 0.21 -1.03 16 13 C 0.50 9.29 8.02 87.90 0.70 9.99 16 14 O -0.59 -17.32 17.59 -3.02 -0.05 -17.38 16 15 C 0.50 21.16 6.93 87.66 0.61 21.77 16 16 O -0.57 -30.09 16.24 14.89 0.24 -29.85 16 17 N -0.60 -24.30 2.86 -851.13 -2.43 -26.74 16 18 C 0.06 1.78 9.89 127.77 1.26 3.04 16 19 C 0.22 10.81 4.22 85.63 0.36 11.17 16 20 C -0.54 -31.56 9.94 25.60 0.25 -31.30 16 21 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 22 C 0.01 0.54 5.47 84.65 0.46 1.00 16 23 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 24 Si 0.95 43.91 27.47 68.60 1.88 45.80 16 25 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 27 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 28 H 0.10 2.49 6.22 -2.39 -0.01 2.48 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 1.52 7.88 -2.39 -0.02 1.50 16 34 H 0.11 1.42 8.10 -2.38 -0.02 1.40 16 35 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 37 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.09 2.08 4.57 -2.39 -0.01 2.07 16 43 H 0.08 2.24 8.11 -2.39 -0.02 2.23 16 44 H 0.02 1.14 6.54 -2.38 -0.02 1.13 16 45 H 0.06 2.47 7.50 -2.39 -0.02 2.45 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -88.91 384.15 5.03 -83.89 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.93 Total: 12.42 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 6.65 Total: 27.71 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -4.53 Total: -97.11 kcal Atomic # 8 Polarization: -72.80 SS G_CDS: 0.09 Total: -72.71 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Total: -88.91 5.03 -83.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727912876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.227 kcal (2) G-P(sol) polarization free energy of solvation -88.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds