Wall clock time and date at job start Fri Apr 10 2020 18:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47077 * 2 1 4 4 C 1.46498 * 119.99998 * 270.00263 * 3 2 1 5 5 C 1.50706 * 109.46753 * 269.99721 * 4 3 2 6 6 H 1.07996 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00011 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99636 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47195 * 89.99976 * 9 7 5 11 11 H 1.48508 * 109.46990 * 210.00024 * 9 7 5 12 12 H 1.48506 * 109.46960 * 329.99888 * 9 7 5 13 13 C 1.34775 * 119.99871 * 90.00086 * 3 2 1 14 14 O 1.21283 * 120.00054 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00023 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.47064 * 180.02562 * 15 13 3 17 17 C 1.34222 * 117.00137 * 180.02562 * 16 15 13 18 18 O 1.20833 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00432 * 179.71953 * 17 16 15 20 20 C 1.50708 * 112.84704 * 50.60950 * 19 17 16 21 21 O 1.21286 * 119.99868 * 129.66295 * 20 19 17 22 22 N 1.34776 * 119.99683 * 309.67218 * 20 19 17 23 23 C 1.46505 * 119.99680 * 179.97438 * 22 20 19 24 24 C 1.53783 * 113.61912 * 279.41790 * 19 17 16 25 25 C 1.53950 * 87.01778 * 220.04582 * 24 19 17 26 26 C 1.53775 * 87.11562 * 25.35842 * 25 24 19 27 27 H 1.08995 * 109.47225 * 299.99952 * 1 2 3 28 28 H 1.09006 * 109.47348 * 60.00086 * 1 2 3 29 29 H 1.09008 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47047 * 240.00271 * 2 1 3 31 31 H 1.08998 * 109.46769 * 120.00502 * 2 1 3 32 32 H 1.09000 * 109.47388 * 29.99646 * 4 3 2 33 33 H 1.08999 * 109.47386 * 150.00109 * 4 3 2 34 34 H 0.97008 * 119.99337 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46698 * 60.00246 * 15 13 3 36 36 H 1.08997 * 109.46779 * 300.00365 * 15 13 3 37 37 H 0.96997 * 120.00225 * 359.97438 * 22 20 19 38 38 H 1.08997 * 109.47040 * 179.97438 * 23 22 20 39 39 H 1.08991 * 109.47458 * 300.00101 * 23 22 20 40 40 H 1.09006 * 109.46877 * 59.99769 * 23 22 20 41 41 H 1.09007 * 113.60883 * 334.56349 * 24 19 17 42 42 H 1.08999 * 113.61552 * 105.46132 * 24 19 17 43 43 H 1.08998 * 113.53495 * 270.80627 * 25 24 19 44 44 H 1.08996 * 113.74259 * 139.94449 * 25 24 19 45 45 H 1.09001 * 113.61506 * 220.09071 * 26 25 24 46 46 H 1.09003 * 113.68938 * 89.19737 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8774 8 7 3.3496 3.1274 -3.6170 9 14 5.9134 2.0964 -3.4170 10 1 5.9761 0.8760 -4.2606 11 1 6.3929 3.2641 -4.1993 12 1 6.7736 1.9155 -2.2200 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3062 2.4723 16 8 2.3053 2.1960 3.5760 17 6 2.1343 1.7123 4.8163 18 8 1.7358 0.5826 4.9746 19 6 2.4458 2.5757 6.0114 20 6 1.7912 3.9314 5.9405 21 8 1.1513 4.3459 6.8838 22 7 1.9168 4.6830 4.8288 23 6 1.2799 6.0005 4.7597 24 6 3.9432 2.6322 6.3572 25 6 3.5220 2.5628 7.8364 26 6 2.2397 1.8619 7.3578 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6760 3.5185 -4.4426 35 1 2.6211 0.4186 2.5302 36 1 0.9432 1.0124 2.5298 37 1 2.4287 4.3515 4.0746 38 1 1.4908 6.4556 3.7920 39 1 0.2026 5.8903 4.8827 40 1 1.6731 6.6362 5.5532 41 1 4.5021 1.7588 6.0210 42 1 4.4199 3.5729 6.0816 43 1 3.3440 3.5404 8.2845 44 1 4.1648 1.9283 8.4464 45 1 1.3431 2.1816 7.8888 46 1 2.3306 0.7774 7.2954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730044742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:26 Heat of formation + Delta-G solvation = -153.900178 kcal Electronic energy + Delta-G solvation = -28918.945520 eV Core-core repulsion = 24809.014173 eV Total energy + Delta-G solvation = -4109.931347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62587 -41.15403 -40.38413 -38.65344 -37.50769 -36.95662 -35.72037 -34.92558 -31.77705 -30.99212 -29.67419 -28.31493 -27.12955 -26.68457 -24.91096 -24.19928 -23.05320 -22.51765 -20.61037 -20.21049 -19.59149 -18.63490 -18.31582 -17.98826 -17.65953 -17.21497 -17.19407 -16.91298 -16.32957 -16.08770 -15.93919 -15.82960 -15.07388 -14.78305 -14.62038 -14.48899 -14.07885 -13.91884 -13.86290 -13.61550 -13.50529 -13.27981 -13.24698 -13.09626 -13.05546 -12.71392 -12.67411 -12.50397 -12.24465 -12.08981 -12.04069 -11.83434 -11.71066 -11.61166 -11.51561 -11.06533 -10.71612 -10.63144 -10.24642 -9.53215 -8.22206 -6.36440 0.71473 0.98113 1.38649 1.41001 1.45714 1.51300 1.62784 2.06685 2.30406 2.44006 2.96524 3.08350 3.27678 3.39969 3.51610 3.56729 3.70587 3.90528 3.94870 4.14682 4.28374 4.37239 4.41002 4.55151 4.58061 4.63324 4.64878 4.82953 4.84875 4.87039 4.92655 4.94093 5.01641 5.02674 5.07510 5.21633 5.27807 5.32006 5.35131 5.54883 5.79969 6.05108 6.31991 6.34652 6.62203 6.73147 6.97005 7.21540 7.37547 8.85028 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003179 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.937928 B = 8805.598288 C = 9192.104036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.501 3.499 14 O -0.569 6.569 15 C 0.060 3.940 16 O -0.342 6.342 17 C 0.483 3.517 18 O -0.506 6.506 19 C -0.118 4.118 20 C 0.539 3.461 21 O -0.556 6.556 22 N -0.720 5.720 23 C 0.083 3.917 24 C -0.105 4.105 25 C -0.125 4.125 26 C -0.098 4.098 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.026 0.974 33 H 0.002 0.998 34 H 0.267 0.733 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.416 0.584 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 -4.908 19.001 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.143 3.857 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.288 3.712 14 O -0.449 6.449 15 C -0.017 4.017 16 O -0.258 6.258 17 C 0.325 3.675 18 O -0.393 6.393 19 C -0.122 4.122 20 C 0.324 3.676 21 O -0.435 6.435 22 N -0.371 5.371 23 C -0.060 4.060 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.044 0.956 33 H 0.020 0.980 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.253 0.747 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.227 -4.238 19.461 20.041 hybrid contribution 0.669 0.022 -1.478 1.622 sum -1.558 -4.216 17.983 18.536 Atomic orbital electron populations 1.22180 0.94543 1.03715 1.01758 1.21853 0.95371 0.81162 1.04434 1.48180 1.63592 1.15167 1.05753 1.18772 0.95460 0.91734 0.79685 1.21705 0.97817 1.32059 1.06611 0.92595 1.25817 1.02215 0.94458 0.96447 1.70051 1.37738 1.34093 1.14821 0.85439 0.79194 0.78070 0.78251 1.19042 1.20820 1.19610 1.20412 0.78455 0.86744 0.85561 1.90664 1.46894 1.19691 1.87640 1.22910 1.04690 0.92232 0.81827 1.86438 1.78796 1.45683 1.14858 1.23387 0.73631 0.86827 0.83650 1.90656 1.42151 1.20088 1.86427 1.22448 1.03637 0.93336 0.92809 1.19579 0.79973 0.85398 0.82699 1.90684 1.41961 1.73164 1.37669 1.46027 1.53865 1.19560 1.17643 1.21726 0.97841 0.82750 1.03711 1.23073 0.88435 1.05383 0.97353 1.22846 0.96146 1.01969 0.95269 1.22915 1.00849 1.00781 0.88987 0.92532 0.93732 0.88528 0.90037 0.88322 0.95568 0.97967 0.92423 0.86036 0.86415 0.74740 0.88792 0.92527 0.91285 0.86805 0.89031 0.89753 0.87392 0.90052 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.07 16 2 C 0.09 2.63 5.93 86.38 0.51 3.14 16 3 N -0.59 -23.49 2.46 -826.15 -2.03 -25.52 16 4 C 0.26 13.54 5.16 85.64 0.44 13.98 16 5 C -0.54 -29.97 9.39 25.60 0.24 -29.73 16 6 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.55 5.46 84.65 0.46 1.01 16 8 N -0.93 -54.45 13.29 21.45 0.28 -54.16 16 9 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.50 19.49 7.75 87.66 0.68 20.17 16 14 O -0.57 -27.31 16.08 15.76 0.25 -27.05 16 15 C 0.06 1.67 4.50 71.24 0.32 1.99 16 16 O -0.34 -9.74 7.69 -44.98 -0.35 -10.09 16 17 C 0.48 12.38 7.00 71.23 0.50 12.88 16 18 O -0.51 -13.94 15.66 21.94 0.34 -13.60 16 19 C -0.12 -2.60 1.20 -53.15 -0.06 -2.66 16 20 C 0.54 14.01 6.62 87.66 0.58 14.59 16 21 O -0.56 -16.96 15.83 -3.05 -0.05 -17.00 16 22 N -0.72 -17.91 5.49 -484.50 -2.66 -20.58 16 23 C 0.08 1.76 10.70 127.77 1.37 3.13 16 24 C -0.10 -1.69 7.22 31.18 0.23 -1.47 16 25 C -0.13 -1.79 7.76 31.18 0.24 -1.55 16 26 C -0.10 -1.82 6.78 31.12 0.21 -1.61 16 27 H 0.06 1.24 7.22 -2.39 -0.02 1.22 16 28 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16 32 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 33 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 34 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 35 H 0.12 2.85 7.39 -2.39 -0.02 2.83 16 36 H 0.12 2.80 7.18 -2.39 -0.02 2.78 16 37 H 0.42 10.94 6.94 -92.71 -0.64 10.30 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.11 1.57 8.09 -2.38 -0.02 1.55 16 42 H 0.09 1.41 8.09 -2.39 -0.02 1.40 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.71 7.41 -2.39 -0.02 1.69 16 46 H 0.11 1.92 7.45 -2.39 -0.02 1.90 16 Total: -1.00 -74.03 385.97 4.63 -69.41 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.35 Total: 22.35 kcal Atomic # 6 Polarization: 24.35 SS G_CDS: 6.45 Total: 30.80 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.41 Total: -100.25 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: 0.20 Total: -67.75 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.03 4.63 -69.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730044742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.495 kcal (2) G-P(sol) polarization free energy of solvation -74.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds