Wall clock time and date at job start Fri Apr 10 2020 18:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 N 1.46506 * 109.46668 * 240.00229 * 2 1 3 5 5 C 1.34773 * 119.99962 * 85.00174 * 4 2 1 6 6 O 1.21289 * 119.99843 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00081 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47304 * 299.99916 * 7 5 4 9 9 C 1.52996 * 109.47340 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47336 * 59.99918 * 9 8 7 11 11 C 1.52998 * 109.46973 * 300.00307 * 10 9 8 12 12 C 1.52996 * 109.47340 * 59.99695 * 11 10 9 13 13 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 14 14 O 1.20833 * 119.99595 * 120.00186 * 13 2 1 15 15 O 1.34224 * 120.00302 * 299.99657 * 13 2 1 16 16 C 1.45206 * 117.00077 * 180.02562 * 15 13 2 17 17 C 1.50699 * 109.47021 * 180.02562 * 16 15 13 18 18 O 1.21297 * 119.99980 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00037 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99944 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00055 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99682 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99941 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00091 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47394 * 90.00283 * 24 22 20 26 26 H 1.48507 * 109.46828 * 210.00133 * 24 22 20 27 27 H 1.48495 * 109.47159 * 329.99467 * 24 22 20 28 28 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 29 29 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 31 31 H 0.97002 * 119.99739 * 264.99556 * 4 2 1 32 32 H 1.09007 * 109.47028 * 59.99905 * 7 5 4 33 33 H 1.08994 * 109.47317 * 299.99749 * 8 7 5 34 34 H 1.09003 * 109.46750 * 59.99863 * 8 7 5 35 35 H 1.09007 * 109.47139 * 300.00078 * 9 8 7 36 36 H 1.08993 * 109.47419 * 180.02562 * 9 8 7 37 37 H 1.08995 * 109.47231 * 179.97438 * 10 9 8 38 38 H 1.09007 * 109.46875 * 59.99998 * 10 9 8 39 39 H 1.08995 * 109.47670 * 299.99375 * 11 10 9 40 40 H 1.09003 * 109.46750 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47135 * 179.97438 * 12 11 10 42 42 H 1.09007 * 109.47139 * 59.99922 * 12 11 10 43 43 H 1.09000 * 109.47070 * 300.00162 * 16 15 13 44 44 H 1.09001 * 109.46626 * 60.00180 * 16 15 13 45 45 H 0.96996 * 119.99844 * 359.97438 * 19 17 16 46 46 H 0.97002 * 120.00138 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6497 -0.7284 -3.5875 8 6 4.0524 -1.2784 -3.3216 9 6 4.5626 -2.0000 -4.5705 10 6 4.6138 -1.0174 -5.7421 11 6 3.2111 -0.4674 -6.0081 12 6 2.7009 0.2542 -4.7592 13 6 2.0323 -0.7104 1.2304 14 8 2.7270 -1.6929 1.1194 15 8 1.7081 -0.2519 2.4495 16 6 2.2277 -0.9859 3.5896 17 6 1.7627 -0.3295 4.8639 18 8 1.0627 0.6599 4.8160 19 7 2.1256 -0.8412 6.0568 20 6 1.7021 -0.2444 7.2161 21 1 1.0781 0.6361 7.1735 22 6 2.0758 -0.7722 8.4459 23 7 1.6703 -0.1999 9.5572 24 14 3.1545 -2.2955 8.5196 25 1 4.5829 -1.8901 8.5393 26 1 2.8412 -3.0648 9.7506 27 1 2.8967 -3.1427 7.3276 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.2490 -1.6318 -1.1527 32 1 1.9774 -1.5507 -3.8326 33 1 4.7247 -0.4562 -3.0766 34 1 4.0158 -1.9788 -2.4872 35 1 3.8902 -2.8224 -4.8152 36 1 5.5617 -2.3922 -4.3809 37 1 4.9777 -1.5313 -6.6317 38 1 5.2862 -0.1950 -5.4975 39 1 2.5387 -1.2896 -6.2528 40 1 3.2477 0.2330 -6.8425 41 1 1.7018 0.6465 -4.9488 42 1 3.3733 1.0766 -4.5145 43 1 1.8643 -2.0130 3.5567 44 1 3.3172 -0.9848 3.5564 45 1 2.6857 -1.6322 6.0951 46 1 1.9315 -0.5681 10.4158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:37 Heat of formation + Delta-G solvation = -178.393165 kcal Electronic energy + Delta-G solvation = -27437.068166 eV Core-core repulsion = 23326.074724 eV Total energy + Delta-G solvation = -4110.993442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04251 -40.21412 -38.47814 -37.97197 -36.49660 -35.31964 -34.10332 -32.26159 -31.83177 -31.14287 -30.43739 -28.63111 -25.42554 -24.54458 -23.63073 -22.94978 -21.14623 -20.59102 -20.09937 -19.70642 -18.68023 -18.24618 -17.26135 -16.79252 -16.53875 -16.01403 -15.72582 -15.42784 -15.06506 -14.82273 -14.59353 -14.47158 -14.41922 -14.06484 -13.69567 -13.22935 -13.10190 -12.95636 -12.76374 -12.63268 -12.53551 -12.39399 -12.28970 -12.20342 -11.83333 -11.68314 -11.54645 -11.29906 -11.05874 -10.85043 -10.68705 -10.65116 -10.59995 -10.51943 -10.08065 -9.99287 -9.71059 -9.52510 -8.71443 -8.32608 -6.42003 -3.95146 1.99665 2.12289 2.37308 2.95567 2.99013 3.01073 3.09789 3.50805 4.00695 4.13295 4.20627 4.26123 4.30205 4.68748 4.72047 4.76534 4.77234 4.84690 4.90412 4.96390 5.03822 5.07364 5.09020 5.19684 5.24117 5.40752 5.46519 5.48608 5.54092 5.61262 5.61961 5.64473 5.68809 5.75768 5.82086 5.89280 5.94721 6.00704 6.06180 6.32883 7.13384 7.39957 7.57413 7.88859 7.97405 8.44198 8.80590 9.26471 9.61472 10.70158 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027836 B = 0.002046 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.648795 B =13679.382075 C =14423.756473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 H 0.129 0.871 4 N -0.717 5.717 5 C 0.522 3.478 6 O -0.534 6.534 7 C -0.103 4.103 8 C -0.113 4.113 9 C -0.117 4.117 10 C -0.123 4.123 11 C -0.120 4.120 12 C -0.100 4.100 13 C 0.459 3.541 14 O -0.512 6.512 15 O -0.316 6.316 16 C 0.058 3.942 17 C 0.446 3.554 18 O -0.555 6.555 19 N -0.578 5.578 20 C -0.309 4.309 21 H 0.123 0.877 22 C 0.045 3.955 23 N -0.874 5.874 24 Si 0.879 3.121 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.268 1.268 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.410 0.590 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.373 0.627 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 -6.904 -29.206 30.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.146 0.854 4 N -0.373 5.373 5 C 0.309 3.691 6 O -0.410 6.410 7 C -0.124 4.124 8 C -0.151 4.151 9 C -0.155 4.155 10 C -0.160 4.160 11 C -0.157 4.157 12 C -0.138 4.138 13 C 0.301 3.699 14 O -0.401 6.401 15 O -0.229 6.229 16 C -0.020 4.020 17 C 0.231 3.769 18 O -0.437 6.437 19 N -0.218 5.218 20 C -0.437 4.437 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.513 5.513 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.194 1.194 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.246 0.754 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.206 0.794 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.302 -5.651 -28.997 29.854 hybrid contribution 1.106 -1.920 0.511 2.274 sum 5.407 -7.571 -28.485 29.966 Atomic orbital electron populations 1.22138 0.91415 1.03389 1.04800 1.20324 0.96557 0.97886 0.80464 0.85382 1.45902 1.68000 1.14886 1.08485 1.20743 0.76887 0.87237 0.84205 1.90727 1.49498 1.15876 1.84904 1.21352 0.98532 0.99537 0.92993 1.21565 0.94493 1.00527 0.98550 1.21522 1.01417 0.98069 0.94492 1.21577 0.97248 0.99077 0.98142 1.21558 0.96611 1.00046 0.97493 1.21360 1.02544 0.97207 0.92650 1.23650 0.77552 0.82942 0.85758 1.90642 1.35981 1.26101 1.87375 1.86548 1.68348 1.54347 1.13644 1.22817 0.99721 0.95710 0.83735 1.19151 0.86642 0.87615 0.83478 1.90618 1.40099 1.26726 1.86266 1.42028 1.46955 1.27420 1.05432 1.19428 1.30711 1.12591 0.80957 0.85962 1.25045 0.97715 0.98187 0.94948 1.69616 1.44010 1.40047 0.97595 0.86675 0.81315 0.82799 0.78677 1.19396 1.19921 1.19394 0.90457 0.91802 0.89239 0.75353 0.88320 0.91192 0.91138 0.91693 0.91524 0.91935 0.91831 0.91900 0.91604 0.91111 0.91061 0.89258 0.89268 0.79403 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.42 37.16 0.35 -1.32 16 2 C 0.15 1.78 3.09 -69.08 -0.21 1.57 16 3 H 0.13 1.56 7.58 -51.93 -0.39 1.17 16 4 N -0.72 -7.04 4.84 -54.93 -0.27 -7.31 16 5 C 0.52 5.35 7.12 -10.99 -0.08 5.27 16 6 O -0.53 -7.30 15.65 5.55 0.09 -7.21 16 7 C -0.10 -0.74 2.52 -91.78 -0.23 -0.97 16 8 C -0.11 -0.73 5.10 -26.73 -0.14 -0.87 16 9 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 10 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 11 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 12 C -0.10 -0.74 4.49 -26.73 -0.12 -0.86 16 13 C 0.46 6.43 7.32 36.00 0.26 6.69 16 14 O -0.51 -7.55 15.59 -18.76 -0.29 -7.84 16 15 O -0.32 -5.33 9.66 -45.89 -0.44 -5.78 16 16 C 0.06 0.99 5.94 36.01 0.21 1.20 16 17 C 0.45 10.08 7.86 -10.99 -0.09 10.00 16 18 O -0.56 -14.98 16.08 -14.12 -0.23 -15.20 16 19 N -0.58 -13.46 5.09 -10.96 -0.06 -13.51 16 20 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 21 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 22 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 23 N -0.87 -24.87 13.96 55.50 0.77 -24.10 16 24 Si 0.88 18.76 27.74 -169.99 -4.71 14.05 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.01 8.11 -51.92 -0.42 0.59 16 31 H 0.41 3.50 7.21 -40.82 -0.29 3.21 16 32 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 35 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.07 0.62 8.10 -51.92 -0.42 0.20 16 43 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 44 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 45 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 46 H 0.28 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -33.56 381.44 -7.36 -40.92 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.21 Total: 9.49 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.76 Total: 10.75 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.45 Total: -44.92 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.88 Total: -36.04 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.56 -7.36 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.472 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds