Wall clock time and date at job start Fri Apr 10 2020 18:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 N 1.46506 * 109.46668 * 240.00229 * 2 1 3 5 5 C 1.34773 * 119.99962 * 85.00174 * 4 2 1 6 6 O 1.21289 * 119.99843 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00081 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47304 * 299.99916 * 7 5 4 9 9 C 1.52996 * 109.47340 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47336 * 59.99918 * 9 8 7 11 11 C 1.52998 * 109.46973 * 300.00307 * 10 9 8 12 12 C 1.52996 * 109.47340 * 59.99695 * 11 10 9 13 13 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 14 14 O 1.20833 * 119.99595 * 120.00186 * 13 2 1 15 15 O 1.34224 * 120.00302 * 299.99657 * 13 2 1 16 16 C 1.45206 * 117.00077 * 180.02562 * 15 13 2 17 17 C 1.50699 * 109.47021 * 180.02562 * 16 15 13 18 18 O 1.21297 * 119.99980 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00037 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99944 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00055 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99682 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99941 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00091 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47394 * 90.00283 * 24 22 20 26 26 H 1.48507 * 109.46828 * 210.00133 * 24 22 20 27 27 H 1.48495 * 109.47159 * 329.99467 * 24 22 20 28 28 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 29 29 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 31 31 H 0.97002 * 119.99739 * 264.99556 * 4 2 1 32 32 H 1.09007 * 109.47028 * 59.99905 * 7 5 4 33 33 H 1.08994 * 109.47317 * 299.99749 * 8 7 5 34 34 H 1.09003 * 109.46750 * 59.99863 * 8 7 5 35 35 H 1.09007 * 109.47139 * 300.00078 * 9 8 7 36 36 H 1.08993 * 109.47419 * 180.02562 * 9 8 7 37 37 H 1.08995 * 109.47231 * 179.97438 * 10 9 8 38 38 H 1.09007 * 109.46875 * 59.99998 * 10 9 8 39 39 H 1.08995 * 109.47670 * 299.99375 * 11 10 9 40 40 H 1.09003 * 109.46750 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47135 * 179.97438 * 12 11 10 42 42 H 1.09007 * 109.47139 * 59.99922 * 12 11 10 43 43 H 1.09000 * 109.47070 * 300.00162 * 16 15 13 44 44 H 1.09001 * 109.46626 * 60.00180 * 16 15 13 45 45 H 0.96996 * 119.99844 * 359.97438 * 19 17 16 46 46 H 0.97002 * 120.00138 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6497 -0.7284 -3.5875 8 6 4.0524 -1.2784 -3.3216 9 6 4.5626 -2.0000 -4.5705 10 6 4.6138 -1.0174 -5.7421 11 6 3.2111 -0.4674 -6.0081 12 6 2.7009 0.2542 -4.7592 13 6 2.0323 -0.7104 1.2304 14 8 2.7270 -1.6929 1.1194 15 8 1.7081 -0.2519 2.4495 16 6 2.2277 -0.9859 3.5896 17 6 1.7627 -0.3295 4.8639 18 8 1.0627 0.6599 4.8160 19 7 2.1256 -0.8412 6.0568 20 6 1.7021 -0.2444 7.2161 21 1 1.0781 0.6361 7.1735 22 6 2.0758 -0.7722 8.4459 23 7 1.6703 -0.1999 9.5572 24 14 3.1545 -2.2955 8.5196 25 1 4.5829 -1.8901 8.5393 26 1 2.8412 -3.0648 9.7506 27 1 2.8967 -3.1427 7.3276 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.2490 -1.6318 -1.1527 32 1 1.9774 -1.5507 -3.8326 33 1 4.7247 -0.4562 -3.0766 34 1 4.0158 -1.9788 -2.4872 35 1 3.8902 -2.8224 -4.8152 36 1 5.5617 -2.3922 -4.3809 37 1 4.9777 -1.5313 -6.6317 38 1 5.2862 -0.1950 -5.4975 39 1 2.5387 -1.2896 -6.2528 40 1 3.2477 0.2330 -6.8425 41 1 1.7018 0.6465 -4.9488 42 1 3.3733 1.0766 -4.5145 43 1 1.8643 -2.0130 3.5567 44 1 3.3172 -0.9848 3.5564 45 1 2.6857 -1.6322 6.0951 46 1 1.9315 -0.5681 10.4158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:36 Heat of formation + Delta-G solvation = -201.064200 kcal Electronic energy + Delta-G solvation = -27438.051256 eV Core-core repulsion = 23326.074724 eV Total energy + Delta-G solvation = -4111.976532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10617 -41.15819 -40.20891 -38.65353 -37.74848 -36.27935 -36.10001 -33.87849 -32.98057 -31.64142 -31.19684 -30.09679 -26.77623 -25.92233 -24.46312 -23.44806 -22.08334 -21.56334 -21.46341 -20.64862 -20.55448 -19.22779 -18.43445 -17.96126 -17.80053 -17.19389 -16.99855 -16.58880 -16.36953 -15.90515 -15.66481 -15.35472 -15.10009 -14.99990 -14.84152 -14.74438 -14.34021 -14.21896 -13.90604 -13.67842 -13.62270 -13.39358 -13.18617 -13.06162 -13.01014 -12.76044 -12.46603 -12.23227 -12.02787 -12.00976 -11.93984 -11.69748 -11.59662 -11.56237 -11.34371 -11.00258 -10.77028 -10.62719 -10.40046 -10.35069 -8.46580 -6.10101 0.87408 1.01743 1.29636 1.33388 1.44096 1.53796 1.74716 2.09044 2.19929 2.72581 3.07633 3.38830 3.56541 3.73786 3.77844 3.85447 3.88002 3.94938 4.07829 4.12105 4.24154 4.28380 4.32214 4.46810 4.55691 4.60723 4.61315 4.68974 4.72230 4.98512 5.07662 5.09601 5.13857 5.17615 5.20764 5.26155 5.27427 5.37755 5.41975 5.46305 5.57378 5.84460 6.33673 6.38752 6.50830 6.76450 7.08829 7.24531 7.76663 8.69969 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027836 B = 0.002046 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.648795 B =13679.382075 C =14423.756473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.120 0.880 4 N -0.708 5.708 5 C 0.522 3.478 6 O -0.573 6.573 7 C -0.096 4.096 8 C -0.111 4.111 9 C -0.114 4.114 10 C -0.124 4.124 11 C -0.115 4.115 12 C -0.099 4.099 13 C 0.466 3.534 14 O -0.514 6.514 15 O -0.338 6.338 16 C 0.068 3.932 17 C 0.447 3.553 18 O -0.608 6.608 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.060 0.940 22 C -0.009 4.009 23 N -0.925 5.925 24 Si 0.962 3.038 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.229 1.229 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.419 0.581 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.393 0.607 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.521 -10.568 -31.309 33.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 H 0.137 0.863 4 N -0.364 5.364 5 C 0.310 3.690 6 O -0.451 6.451 7 C -0.117 4.117 8 C -0.149 4.149 9 C -0.152 4.152 10 C -0.161 4.161 11 C -0.152 4.152 12 C -0.137 4.137 13 C 0.308 3.692 14 O -0.403 6.403 15 O -0.252 6.252 16 C -0.009 4.009 17 C 0.234 3.766 18 O -0.493 6.493 19 N -0.217 5.217 20 C -0.463 4.463 21 H 0.078 0.922 22 C -0.209 4.209 23 N -0.565 5.565 24 Si 0.782 3.218 25 H -0.180 1.180 26 H -0.197 1.197 27 H -0.152 1.152 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.257 0.743 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.230 0.770 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.048 -9.353 -31.129 33.062 hybrid contribution 0.503 -0.652 1.129 1.398 sum 6.551 -10.004 -30.000 32.295 Atomic orbital electron populations 1.22082 0.90525 1.04128 1.04360 1.20278 0.97184 0.97348 0.80135 0.86287 1.45851 1.67610 1.15168 1.07742 1.21339 0.75939 0.86834 0.84873 1.90715 1.51234 1.17697 1.85483 1.21394 0.99420 0.99727 0.91128 1.21560 0.93522 1.00220 0.99597 1.21519 1.01954 0.98127 0.93578 1.21589 0.96822 0.98957 0.98738 1.21534 0.96983 1.00284 0.96417 1.21338 1.01583 0.97013 0.93778 1.23920 0.77197 0.82859 0.85176 1.90636 1.36099 1.26282 1.87243 1.86546 1.69033 1.55103 1.14521 1.22679 1.01230 0.96012 0.81004 1.20199 0.84788 0.86592 0.85050 1.90597 1.42150 1.29165 1.87387 1.41796 1.47384 1.28022 1.04476 1.18998 1.31635 1.12087 0.83532 0.92190 1.26117 0.98922 1.02300 0.93542 1.69788 1.45628 1.42433 0.98646 0.85404 0.78773 0.77447 0.80208 1.17985 1.19744 1.15242 0.90181 0.90449 0.90385 0.74281 0.85916 0.92686 0.90508 0.90410 0.91031 0.90771 0.92738 0.90655 0.91345 0.92113 0.93017 0.85995 0.86299 0.77038 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.42 71.98 0.68 -2.39 16 2 C 0.16 3.48 3.09 44.24 0.14 3.62 16 3 H 0.12 2.91 7.58 -2.39 -0.02 2.89 16 4 N -0.71 -12.73 4.84 -446.10 -2.16 -14.89 16 5 C 0.52 10.18 7.12 87.66 0.62 10.80 16 6 O -0.57 -15.74 15.65 -3.06 -0.05 -15.79 16 7 C -0.10 -1.21 2.52 -11.54 -0.03 -1.24 16 8 C -0.11 -1.22 5.10 30.59 0.16 -1.06 16 9 C -0.11 -0.90 5.92 30.59 0.18 -0.72 16 10 C -0.12 -1.05 5.92 30.59 0.18 -0.87 16 11 C -0.11 -1.06 5.92 30.59 0.18 -0.88 16 12 C -0.10 -1.39 4.49 30.59 0.14 -1.25 16 13 C 0.47 12.14 7.32 71.23 0.52 12.67 16 14 O -0.51 -13.55 15.59 21.94 0.34 -13.21 16 15 O -0.34 -10.95 9.66 -45.00 -0.43 -11.39 16 16 C 0.07 2.14 5.94 71.24 0.42 2.56 16 17 C 0.45 20.09 7.86 87.66 0.69 20.78 16 18 O -0.61 -34.04 16.08 15.72 0.25 -33.78 16 19 N -0.57 -26.39 5.09 -306.98 -1.56 -27.95 16 20 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 21 H 0.06 4.10 7.39 -2.91 -0.02 4.07 16 22 C -0.01 -0.48 5.50 84.92 0.47 -0.01 16 23 N -0.93 -54.34 13.96 21.66 0.30 -54.04 16 24 Si 0.96 37.20 27.74 68.60 1.90 39.10 16 25 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 26 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 27 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.76 8.11 -2.38 -0.02 1.74 16 31 H 0.42 6.09 7.21 -92.71 -0.67 5.42 16 32 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.75 7.56 -2.39 -0.02 0.73 16 35 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 42 H 0.05 0.91 8.10 -2.38 -0.02 0.89 16 43 H 0.12 3.12 8.13 -2.39 -0.02 3.10 16 44 H 0.12 3.11 8.13 -2.39 -0.02 3.09 16 45 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 46 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -77.91 381.44 3.54 -74.38 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.26 Total: 33.82 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 5.20 Total: 23.76 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -3.42 Total: -96.89 kcal Atomic # 8 Polarization: -74.28 SS G_CDS: 0.11 Total: -74.17 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.90 Total: 39.10 kcal Total: -77.91 3.54 -74.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.689 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds