Wall clock time and date at job start Fri Apr 10 2020 18:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21278 * 120.00117 * 2 1 4 4 N 1.34780 * 119.99694 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99732 * 179.97438 * 4 2 1 6 6 C 1.50694 * 109.47139 * 179.97438 * 5 4 2 7 7 O 1.21290 * 120.00073 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00112 * 179.97438 * 6 5 4 9 9 C 1.47742 * 125.82318 * 359.91415 * 8 6 5 10 10 C 1.54913 * 104.84345 * 155.82944 * 9 8 6 11 11 C 1.55153 * 101.58071 * 37.09340 * 10 9 8 12 12 C 1.47031 * 125.64977 * 180.02562 * 8 6 5 13 13 H 1.09000 * 109.87973 * 300.60041 * 12 8 6 14 14 C 1.50701 * 109.88077 * 61.60606 * 12 8 6 15 15 O 1.20822 * 119.99988 * 359.68680 * 14 12 8 16 16 O 1.34231 * 119.99870 * 179.68333 * 14 12 8 17 17 C 1.45198 * 116.99983 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.46884 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46756 * 59.99920 * 24 22 20 26 26 H 1.48490 * 109.47381 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47117 * 300.00527 * 24 22 20 28 28 H 1.09003 * 109.47125 * 269.99560 * 1 2 3 29 29 H 1.09003 * 109.47203 * 30.00099 * 1 2 3 30 30 H 1.09004 * 109.47485 * 149.99894 * 1 2 3 31 31 H 0.96998 * 119.99908 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.46771 * 59.99618 * 5 4 2 33 33 H 1.08994 * 109.47285 * 299.99765 * 5 4 2 34 34 H 1.08994 * 110.29471 * 37.01730 * 9 8 6 35 35 H 1.09004 * 110.52684 * 274.75315 * 9 8 6 36 36 H 1.09002 * 111.00047 * 279.01909 * 10 9 8 37 37 H 1.09004 * 111.00557 * 155.16701 * 10 9 8 38 38 H 1.09004 * 110.71509 * 206.13412 * 11 10 9 39 39 H 1.09001 * 110.72046 * 82.86605 * 11 10 9 40 40 H 1.09001 * 109.46782 * 60.00304 * 17 16 14 41 41 H 1.08992 * 109.47385 * 300.00392 * 17 16 14 42 42 H 1.09002 * 109.47398 * 300.00338 * 18 17 16 43 43 H 1.09001 * 109.47194 * 60.00518 * 18 17 16 44 44 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 45 45 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 46 46 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 8 3.3600 -3.5099 -0.0009 8 7 5.4732 -2.8343 -0.0019 9 6 6.5422 -1.8146 -0.0050 10 6 7.7730 -2.5281 0.6081 11 6 7.6263 -3.9584 0.0250 12 6 6.0973 -4.1656 -0.0025 13 1 5.7829 -4.7227 0.8800 14 6 5.7038 -4.9156 -1.2490 15 8 4.9703 -4.3993 -2.0585 16 8 6.1682 -6.1572 -1.4599 17 6 5.7482 -6.8193 -2.6820 18 6 6.3729 -8.2145 -2.7466 19 6 5.9309 -8.9120 -4.0346 20 6 6.5456 -10.2864 -4.0981 21 1 7.1871 -10.6284 -3.2994 22 6 6.2883 -11.1077 -5.1753 23 7 5.5067 -10.6913 -6.1477 24 14 7.0509 -12.8111 -5.2543 25 1 6.6066 -13.6071 -4.0821 26 1 6.6208 -13.4885 -6.5038 27 1 8.5310 -12.6920 -5.2394 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6958 -2.0073 -0.0005 32 1 4.0095 -0.6536 0.8889 33 1 4.0088 -0.6533 -0.8911 34 1 6.2531 -0.9619 0.6092 35 1 6.7593 -1.4915 -1.0231 36 1 7.7145 -2.5420 1.6965 37 1 8.7007 -2.0633 0.2741 38 1 8.1033 -4.6910 0.6761 39 1 8.0402 -4.0086 -0.9821 40 1 6.0740 -6.2347 -3.5423 41 1 4.6619 -6.9072 -2.6927 42 1 7.4593 -8.1271 -2.7356 43 1 6.0467 -8.7989 -1.8863 44 1 4.8444 -8.9994 -4.0461 45 1 6.2573 -8.3275 -4.8948 46 1 5.3254 -11.2692 -6.9053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733866236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:52 Heat of formation + Delta-G solvation = -192.375883 kcal Electronic energy + Delta-G solvation = -27471.434715 eV Core-core repulsion = 23359.834937 eV Total energy + Delta-G solvation = -4111.599778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.17412 -41.07318 -40.25677 -38.63237 -37.71843 -35.97364 -35.59267 -33.77219 -33.08377 -31.44756 -30.94679 -28.96724 -28.06162 -25.76356 -24.74175 -22.98176 -22.21821 -22.20301 -21.66237 -20.41602 -19.10117 -18.75138 -18.54065 -17.88873 -17.71401 -17.53830 -17.18962 -16.82119 -16.51397 -16.38153 -15.85510 -15.65035 -15.32014 -14.73865 -14.46398 -14.43972 -14.15290 -14.13027 -13.89160 -13.84302 -13.78461 -13.36946 -13.28122 -12.97044 -12.90843 -12.79126 -12.55064 -12.42078 -12.20229 -12.11010 -11.92541 -11.70793 -11.47225 -11.41654 -11.28320 -11.25017 -11.13425 -10.58815 -10.34625 -10.00883 -8.23302 -6.35504 1.04708 1.08177 1.40614 1.44291 1.47308 1.52265 1.53987 1.77831 2.29746 2.40383 3.10346 3.16452 3.36335 3.53523 3.67926 3.86834 3.92008 3.98498 4.00895 4.11563 4.20300 4.22516 4.33991 4.44446 4.48886 4.63806 4.67341 4.72898 4.74731 4.79538 4.83601 5.00828 5.03774 5.06726 5.14445 5.19125 5.28410 5.36374 5.47559 5.59442 5.77212 6.15755 6.17300 6.38865 6.59201 6.80124 6.83042 7.08604 7.34154 8.88859 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.002153 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.761022 B =12999.764223 C =14328.380355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.591 6.591 4 N -0.720 5.720 5 C 0.112 3.888 6 C 0.527 3.473 7 O -0.566 6.566 8 N -0.604 5.604 9 C 0.083 3.917 10 C -0.116 4.116 11 C -0.115 4.115 12 C 0.146 3.854 13 H 0.125 0.875 14 C 0.442 3.558 15 O -0.533 6.533 16 O -0.352 6.352 17 C 0.081 3.919 18 C -0.091 4.091 19 C 0.026 3.974 20 C -0.543 4.543 21 H 0.068 0.932 22 C -0.004 4.004 23 N -0.935 5.935 24 Si 0.972 3.028 25 H -0.265 1.265 26 H -0.285 1.285 27 H -0.263 1.263 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.415 0.585 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.066 0.934 44 H -0.008 1.008 45 H -0.004 1.004 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 23.044 19.491 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.301 3.699 3 O -0.472 6.472 4 N -0.376 5.376 5 C -0.015 4.015 6 C 0.316 3.684 7 O -0.444 6.444 8 N -0.338 5.338 9 C -0.037 4.037 10 C -0.153 4.153 11 C -0.153 4.153 12 C 0.040 3.960 13 H 0.142 0.858 14 C 0.284 3.716 15 O -0.422 6.422 16 O -0.268 6.268 17 C 0.007 3.993 18 C -0.129 4.129 19 C -0.011 4.011 20 C -0.581 4.581 21 H 0.086 0.914 22 C -0.201 4.201 23 N -0.575 5.575 24 Si 0.796 3.204 25 H -0.190 1.190 26 H -0.210 1.210 27 H -0.188 1.188 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.253 0.747 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.010 0.990 45 H 0.014 0.986 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.013 23.391 19.055 30.187 hybrid contribution -0.496 -1.486 -1.075 1.900 sum 0.518 21.905 17.981 28.344 Atomic orbital electron populations 1.21911 0.87962 1.06124 1.06506 1.21525 0.92296 0.82101 0.73996 1.90700 1.71928 1.32591 1.51996 1.45979 1.06109 1.10329 1.75164 1.21027 0.82655 0.92059 1.05796 1.20583 0.81157 0.91730 0.74930 1.90719 1.55379 1.47379 1.50920 1.48465 1.05469 1.07267 1.72618 1.22936 0.86490 0.91380 1.02910 1.22868 0.97918 0.92357 1.02195 1.22731 0.87556 1.00898 1.04121 1.21442 0.97764 0.84486 0.92269 0.85766 1.24908 0.77017 0.80465 0.89192 1.90645 1.34968 1.68973 1.47593 1.86464 1.67869 1.28990 1.43455 1.23083 0.98931 0.93744 0.83529 1.21448 1.00854 0.91190 0.99364 1.18932 0.95214 0.94883 0.92115 1.21586 1.29885 1.00486 1.06143 0.91410 1.26066 0.95620 1.03319 0.95139 1.70108 1.38273 1.38819 1.10299 0.85398 0.79105 0.78349 0.77591 1.19024 1.21006 1.18800 0.86695 0.88234 0.88420 0.74667 0.86119 0.88107 0.86840 0.90571 0.87928 0.86480 0.85967 0.90544 0.92088 0.93086 0.90847 0.91501 0.98970 0.98550 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.30 71.24 0.73 -0.95 16 2 C 0.51 9.55 7.94 87.66 0.70 10.24 16 3 O -0.59 -15.45 17.10 -3.02 -0.05 -15.50 16 4 N -0.72 -13.31 5.53 -466.80 -2.58 -15.89 16 5 C 0.11 1.97 5.17 85.63 0.44 2.41 16 6 C 0.53 12.13 7.09 87.66 0.62 12.75 16 7 O -0.57 -17.85 14.94 10.51 0.16 -17.69 16 8 N -0.60 -11.16 2.85 -791.36 -2.26 -13.42 16 9 C 0.08 0.75 6.71 86.79 0.58 1.33 16 10 C -0.12 -0.54 7.09 31.99 0.23 -0.31 16 11 C -0.12 -1.29 6.44 31.78 0.20 -1.09 16 12 C 0.15 2.94 3.36 44.59 0.15 3.09 16 13 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.44 13.93 6.77 71.24 0.48 14.41 16 15 O -0.53 -20.82 14.80 26.99 0.40 -20.43 16 16 O -0.35 -11.83 10.19 -51.42 -0.52 -12.35 16 17 C 0.08 3.16 5.47 71.98 0.39 3.56 16 18 C -0.09 -3.84 5.53 30.59 0.17 -3.67 16 19 C 0.03 1.38 4.97 29.85 0.15 1.53 16 20 C -0.54 -30.93 9.11 25.60 0.23 -30.69 16 21 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 22 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 23 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 24 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.42 7.67 7.44 -92.71 -0.69 6.98 16 32 H 0.12 1.56 7.86 -2.39 -0.02 1.54 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 0.44 7.50 -2.39 -0.02 0.42 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.12 0.10 8.14 -2.39 -0.02 0.09 16 38 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.08 1.05 7.84 -2.39 -0.02 1.03 16 40 H 0.06 2.41 8.13 -2.39 -0.02 2.40 16 41 H 0.05 2.13 8.13 -2.39 -0.02 2.11 16 42 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -84.55 389.77 3.29 -81.25 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.29 Total: 12.31 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 5.55 Total: 12.86 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -4.55 Total: -86.59 kcal Atomic # 8 Polarization: -65.94 SS G_CDS: -0.02 Total: -65.96 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -84.55 3.29 -81.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.122 kcal (2) G-P(sol) polarization free energy of solvation -84.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds