Wall clock time and date at job start Fri Apr 10 2020 18:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48494 * 109.47490 * 275.00203 * 3 2 1 5 5 H 1.48497 * 109.46976 * 35.00335 * 3 2 1 6 6 H 1.48507 * 109.46857 * 154.99737 * 3 2 1 7 7 C 1.38808 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00290 * 212.34600 * 7 2 1 9 9 N 1.36937 * 119.99909 * 32.33635 * 7 2 1 10 10 C 1.46932 * 120.63354 * 196.62933 * 9 7 2 11 11 C 1.53180 * 108.77754 * 233.63440 * 10 9 7 12 12 C 1.53043 * 109.31580 * 305.36052 * 11 10 9 13 13 N 1.46499 * 109.46157 * 181.38428 * 12 11 10 14 14 C 1.34780 * 119.99727 * 154.97430 * 13 12 11 15 15 O 1.21580 * 120.00013 * 355.02071 * 14 13 12 16 16 N 1.34777 * 119.99528 * 175.28854 * 14 13 12 17 17 C 1.46964 * 120.59948 * 4.37046 * 16 14 13 18 18 C 1.53808 * 108.39987 * 124.75476 * 17 16 14 19 19 N 1.46963 * 108.57554 * 49.63927 * 18 17 16 20 20 C 1.34782 * 120.59071 * 124.62849 * 19 18 17 21 21 O 1.21508 * 119.99790 * 180.02562 * 20 19 18 22 22 O 1.34630 * 119.99911 * 0.02562 * 20 19 18 23 23 C 1.46957 * 118.81439 * 304.64376 * 19 18 17 24 24 C 1.46972 * 120.59012 * 184.65031 * 16 14 13 25 25 C 1.53045 * 109.52210 * 61.37637 * 12 11 10 26 26 C 1.46926 * 120.63053 * 16.65863 * 9 7 2 27 27 H 0.97000 * 119.99770 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.58428 * 113.84185 * 10 9 7 29 29 H 1.09002 * 109.70226 * 353.49247 * 10 9 7 30 30 H 1.09004 * 109.49956 * 185.41312 * 11 10 9 31 31 H 1.08998 * 109.49882 * 65.31795 * 11 10 9 32 32 H 1.08994 * 109.46101 * 301.36153 * 12 11 10 33 33 H 0.97001 * 120.00408 * 334.97550 * 13 12 11 34 34 H 1.09001 * 109.60556 * 244.54186 * 17 16 14 35 35 H 1.09000 * 109.60781 * 5.05015 * 17 16 14 36 36 H 1.08997 * 109.74268 * 289.85176 * 18 17 16 37 37 H 1.09004 * 109.67541 * 169.38635 * 18 17 16 38 38 H 0.96705 * 116.99925 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.61241 * 295.48452 * 23 19 18 40 40 H 1.09004 * 109.75296 * 175.05870 * 23 19 18 41 41 H 1.08998 * 109.60951 * 354.94284 * 24 16 14 42 42 H 1.08992 * 109.61263 * 115.28824 * 24 16 14 43 43 H 1.08997 * 109.50033 * 58.57936 * 25 12 11 44 44 H 1.08995 * 109.49855 * 178.67952 * 25 12 11 45 45 H 1.09004 * 109.58437 * 246.15104 * 26 9 7 46 46 H 1.08997 * 109.58979 * 6.43360 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5045 2.6198 0.8031 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 2.9646 -1.2749 0.4998 9 7 1.4849 -2.2958 -0.6354 10 6 1.9978 -3.6434 -0.3531 11 6 2.3940 -4.3072 -1.6755 12 6 1.2017 -4.2767 -2.6345 13 7 1.5668 -4.9402 -3.8885 14 6 0.6101 -5.4848 -4.6661 15 8 -0.5442 -5.5059 -4.2849 16 7 0.9339 -6.0109 -5.8640 17 6 2.3373 -6.0842 -6.2941 18 6 2.6607 -7.5455 -6.6488 19 7 1.6161 -8.0505 -7.5508 20 6 1.9398 -8.5758 -8.7491 21 8 1.0674 -8.9897 -9.4866 22 8 3.2298 -8.6419 -9.1287 23 6 0.2123 -7.9721 -7.1231 24 6 -0.1107 -6.5159 -6.7661 25 6 0.8125 -2.8245 -2.9206 26 6 0.3979 -2.1439 -1.6122 27 1 -0.4850 0.8401 0.0004 28 1 1.2228 -4.2345 0.1347 29 1 2.8697 -3.5759 0.2976 30 1 2.6858 -5.3410 -1.4907 31 1 3.2306 -3.7662 -2.1178 32 1 0.3577 -4.7963 -2.1811 33 1 2.4971 -4.9875 -4.1593 34 1 2.4852 -5.4512 -7.1691 35 1 2.9860 -5.7505 -5.4842 36 1 2.6829 -8.1484 -5.7410 37 1 3.6294 -7.5968 -7.1458 38 1 3.4128 -9.0265 -9.9970 39 1 0.0603 -8.6054 -6.2491 40 1 -0.4384 -8.3033 -7.9325 41 1 -1.0789 -6.4676 -6.2680 42 1 -0.1350 -5.9111 -7.6726 43 1 1.6640 -2.2976 -3.3510 44 1 -0.0217 -2.8028 -3.6218 45 1 -0.5076 -2.6129 -1.2271 46 1 0.2130 -1.0848 -1.7914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738426204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:07 Heat of formation + Delta-G solvation = -94.225748 kcal Electronic energy + Delta-G solvation = -28607.871248 eV Core-core repulsion = 24532.820330 eV Total energy + Delta-G solvation = -4075.050918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.86931 -41.11694 -39.36951 -38.31816 -37.01664 -36.07675 -35.22437 -33.89901 -32.50411 -31.69891 -31.11101 -28.86880 -26.86213 -25.14154 -24.48017 -23.91510 -23.52335 -22.03520 -21.18679 -20.56137 -19.70546 -18.85594 -18.64256 -17.97132 -17.53638 -17.13326 -16.78272 -16.59730 -16.19442 -15.88229 -15.58320 -15.37692 -15.19793 -15.07648 -14.76652 -14.72310 -14.50946 -14.11453 -14.04770 -13.60097 -13.20283 -13.13112 -12.73704 -12.66084 -12.58006 -12.57052 -12.48885 -12.40936 -12.09705 -12.04020 -11.80234 -11.69082 -11.49904 -11.38169 -11.16705 -10.52226 -10.45702 -10.02608 -9.38693 -8.87382 -7.92188 -5.16902 1.16336 1.47903 1.51697 1.60048 1.65794 1.70258 2.12892 2.54244 2.86598 3.19730 3.21564 3.66208 3.72035 3.84250 3.90639 4.05746 4.11087 4.11272 4.27726 4.35882 4.44961 4.48604 4.62874 4.65004 4.67494 4.77077 4.81494 4.87775 4.91875 5.04379 5.10110 5.14113 5.24109 5.32424 5.41970 5.47214 5.59758 5.63477 5.72263 5.75687 5.87230 6.18715 6.31855 6.96110 7.10701 7.32287 7.55740 7.87000 8.36192 9.16438 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028508 B = 0.002380 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.933001 B =11761.621911 C =11940.126915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.053 4.053 3 Si 0.953 3.047 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.261 4.261 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.120 4.120 12 C 0.179 3.821 13 N -0.724 5.724 14 C 0.704 3.296 15 O -0.632 6.632 16 N -0.629 5.629 17 C 0.094 3.906 18 C 0.102 3.898 19 N -0.593 5.593 20 C 0.668 3.332 21 O -0.618 6.618 22 O -0.514 6.514 23 C 0.121 3.879 24 C 0.118 3.882 25 C -0.128 4.128 26 C 0.173 3.827 27 H 0.249 0.751 28 H 0.013 0.987 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.409 0.591 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.446 0.554 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.042 0.958 45 H -0.011 1.011 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.948 -18.208 -17.899 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.249 4.249 3 Si 0.781 3.219 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.390 4.390 8 H 0.097 0.903 9 N -0.332 5.332 10 C 0.015 3.985 11 C -0.159 4.159 12 C 0.074 3.926 13 N -0.380 5.380 14 C 0.405 3.595 15 O -0.513 6.513 16 N -0.367 5.367 17 C -0.029 4.029 18 C -0.021 4.021 19 N -0.334 5.334 20 C 0.422 3.578 21 O -0.511 6.511 22 O -0.326 6.326 23 C -0.001 4.001 24 C -0.007 4.007 25 C -0.168 4.168 26 C 0.046 3.954 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.248 0.752 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.144 0.856 38 H 0.309 0.691 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.007 0.993 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.791 -18.069 -17.462 26.968 hybrid contribution 0.093 0.942 -0.430 1.040 sum 9.884 -17.127 -17.892 26.667 Atomic orbital electron populations 1.70371 1.07031 1.26011 1.53980 1.25476 0.95474 1.01437 1.02509 0.85454 0.78896 0.80293 0.77222 1.21645 1.22881 1.18820 1.19572 1.00549 0.88815 1.30067 0.90304 1.44522 1.40892 1.02613 1.45220 1.21043 0.97241 0.84974 0.95260 1.22125 0.96607 1.01755 0.95428 1.20531 0.98000 0.90969 0.83116 1.45252 1.09530 1.60185 1.23076 1.16046 0.84567 0.78093 0.80757 1.90906 1.20633 1.65646 1.74147 1.47250 1.08623 1.64765 1.16062 1.22369 0.80992 0.97271 1.02240 1.22372 0.91520 0.93638 0.94569 1.46845 1.08833 1.62472 1.15222 1.17746 0.81336 0.76815 0.81892 1.91039 1.50414 1.54902 1.54716 1.84127 1.24737 1.79348 1.44406 1.21994 0.80324 0.96408 1.01374 1.21853 0.92084 0.93597 0.93118 1.22276 1.00187 0.96474 0.97875 1.20600 0.88308 0.99278 0.87200 0.94180 0.96947 0.91180 0.88814 0.90408 0.92501 0.75190 0.89644 0.86983 0.89691 0.85596 0.69075 0.89973 0.87708 0.88795 0.90438 0.91974 0.93903 0.99327 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 11.44 21.65 0.25 -55.53 16 2 C -0.05 -2.98 4.62 84.86 0.39 -2.59 16 3 Si 0.95 44.36 29.66 68.60 2.03 46.39 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.26 -14.00 9.59 84.03 0.81 -13.19 16 8 H 0.08 4.05 7.93 -2.91 -0.02 4.03 16 9 N -0.61 -29.83 3.03 -699.10 -2.12 -31.95 16 10 C 0.14 5.37 6.51 86.36 0.56 5.94 16 11 C -0.12 -3.39 5.55 30.67 0.17 -3.22 16 12 C 0.18 5.76 2.46 45.02 0.11 5.87 16 13 N -0.72 -17.46 4.99 -457.68 -2.28 -19.75 16 14 C 0.70 19.35 8.26 179.05 1.48 20.83 16 15 O -0.63 -23.92 15.38 -3.97 -0.06 -23.98 16 16 N -0.63 -11.91 2.94 -835.16 -2.46 -14.37 16 17 C 0.09 0.97 6.59 86.56 0.57 1.54 16 18 C 0.10 0.87 6.62 86.56 0.57 1.44 16 19 N -0.59 -8.19 2.95 -947.52 -2.79 -10.98 16 20 C 0.67 10.73 8.80 129.79 1.14 11.87 16 21 O -0.62 -14.68 16.54 19.82 0.33 -14.35 16 22 O -0.51 -4.43 12.06 -55.39 -0.67 -5.10 16 23 C 0.12 1.87 6.59 86.42 0.57 2.44 16 24 C 0.12 2.13 6.60 86.41 0.57 2.70 16 25 C -0.13 -4.99 5.65 30.68 0.17 -4.82 16 26 C 0.17 8.57 5.55 86.36 0.48 9.05 16 27 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 2.51 7.88 -2.39 -0.02 2.49 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 2.18 7.51 -2.39 -0.02 2.16 16 33 H 0.41 6.63 6.07 -92.71 -0.56 6.07 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 0.73 5.60 -2.39 -0.01 0.71 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.13 0.62 6.91 -2.38 -0.02 0.61 16 38 H 0.45 0.26 9.11 -74.05 -0.67 -0.42 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.73 7.00 -2.38 -0.02 1.71 16 41 H 0.09 2.08 6.99 -2.39 -0.02 2.06 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 46 H 0.06 3.33 5.69 -2.39 -0.01 3.32 16 Total: -1.00 -80.05 364.12 -0.39 -80.44 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -0.22 Total: 11.31 kcal Atomic # 6 Polarization: 30.27 SS G_CDS: 7.60 Total: 37.87 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -9.40 Total: -132.58 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.40 Total: -43.43 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -80.05 -0.39 -80.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738426204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.787 kcal (2) G-P(sol) polarization free energy of solvation -80.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds