Wall clock time and date at job start Fri Apr 10 2020 18:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21289 * 119.99924 * 2 1 4 4 N 1.34778 * 120.00511 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00042 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.46581 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47195 * 60.00455 * 5 4 2 8 8 C 1.53000 * 109.47060 * 64.99866 * 7 5 4 9 9 C 1.53787 * 113.61239 * 272.49590 * 8 7 5 10 10 C 1.53781 * 87.07799 * 220.02294 * 9 8 7 11 11 C 1.53776 * 87.08649 * 25.43327 * 10 9 8 12 12 C 1.50699 * 109.47310 * 300.00033 * 5 4 2 13 13 O 1.20829 * 119.99993 * 20.00270 * 12 5 4 14 14 O 1.34231 * 120.00037 * 200.00343 * 12 5 4 15 15 C 1.45201 * 116.99748 * 180.02562 * 14 12 5 16 16 C 1.50700 * 109.46863 * 179.97438 * 15 14 12 17 17 O 1.21286 * 119.99798 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00258 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00493 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47349 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99684 * 359.97438 * 20 19 18 22 22 C 1.37869 * 119.99859 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00522 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46678 * 60.00150 * 24 22 20 26 26 H 1.48497 * 109.47277 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46968 * 300.00846 * 24 22 20 28 28 H 1.08993 * 109.47207 * 240.00262 * 1 2 3 29 29 H 1.09004 * 109.47072 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46980 * 120.00179 * 1 2 3 31 31 H 0.97003 * 119.99470 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.47153 * 304.99547 * 7 5 4 33 33 H 1.09001 * 109.46832 * 184.99738 * 7 5 4 34 34 H 1.08992 * 112.85173 * 43.80170 * 8 7 5 35 35 H 1.08998 * 113.61082 * 334.56508 * 9 8 7 36 36 H 1.08997 * 113.61565 * 105.47270 * 9 8 7 37 37 H 1.09004 * 113.61390 * 270.87961 * 10 9 8 38 38 H 1.09003 * 113.61660 * 139.98542 * 10 9 8 39 39 H 1.08999 * 113.61671 * 220.02331 * 11 10 9 40 40 H 1.09001 * 113.69175 * 89.12786 * 11 10 9 41 41 H 1.09001 * 109.46938 * 299.99602 * 15 14 12 42 42 H 1.09000 * 109.47130 * 60.00038 * 15 14 12 43 43 H 0.97007 * 119.99929 * 359.97438 * 18 16 15 44 44 H 1.09001 * 109.46754 * 299.99444 * 19 18 16 45 45 H 1.09000 * 109.47244 * 59.99838 * 19 18 16 46 46 H 0.97005 * 120.00700 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 1 4.0093 -2.1947 0.0010 7 6 4.1554 -0.4456 1.2504 8 6 3.7502 -1.2356 2.4964 9 6 2.3567 -0.8677 3.0329 10 6 2.9578 -0.9764 4.4441 11 6 4.3192 -0.6588 3.8035 12 6 4.1488 -0.4569 -1.2293 13 8 3.4233 0.3016 -1.8279 14 8 5.4025 -0.6669 -1.6602 15 6 5.8191 0.0513 -2.8514 16 6 7.2452 -0.3074 -3.1812 17 8 7.8506 -1.0915 -2.4814 18 7 7.8478 0.2431 -4.2537 19 6 9.2339 -0.1060 -4.5746 20 6 9.6668 0.6405 -5.8102 21 1 8.9781 1.3078 -6.3069 22 6 10.9420 0.4714 -6.3063 23 7 11.7805 -0.3415 -5.7017 24 14 11.4784 1.3961 -7.8382 25 1 11.3791 2.8576 -7.5943 26 1 12.8835 1.0423 -8.1634 27 1 10.5986 1.0231 -8.9749 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6960 -2.0072 0.0005 32 1 3.7208 0.5530 1.2960 33 1 5.2418 -0.3673 1.2071 34 1 3.9083 -2.3085 2.3873 35 1 2.0400 0.1415 2.7697 36 1 1.5957 -1.6194 2.8233 37 1 2.8979 -1.9787 4.8683 38 1 2.6067 -0.2044 5.1289 39 1 5.1426 -1.2419 4.2161 40 1 4.5404 0.4072 3.7506 41 1 5.1730 -0.2227 -3.6855 42 1 5.7467 1.1241 -2.6728 43 1 7.3635 0.8700 -4.8136 44 1 9.8799 0.1676 -3.7404 45 1 9.3063 -1.1787 -4.7537 46 1 12.6776 -0.4608 -6.0510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787176377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:14 Heat of formation + Delta-G solvation = -144.847195 kcal Electronic energy + Delta-G solvation = -27837.951508 eV Core-core repulsion = 23728.412728 eV Total energy + Delta-G solvation = -4109.538780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.13060 -39.72255 -38.80610 -38.54295 -36.25624 -35.13950 -34.23360 -32.40552 -32.04703 -29.46142 -29.22720 -27.04350 -25.99091 -25.85689 -22.87921 -22.53616 -21.73178 -20.11083 -19.90599 -19.68869 -18.01275 -17.65255 -17.03171 -16.72467 -16.49546 -16.07221 -15.56488 -15.38353 -15.11731 -15.03430 -14.73176 -14.49184 -14.11090 -13.94872 -13.49658 -13.18604 -12.98386 -12.81080 -12.72139 -12.60993 -12.43081 -12.38772 -11.98027 -11.85337 -11.72936 -11.55178 -11.02942 -10.93900 -10.89728 -10.75415 -10.63487 -10.53593 -10.39613 -10.34140 -9.82559 -9.45124 -9.36096 -9.12968 -8.77250 -7.97826 -6.18957 -4.26449 2.13078 2.22852 2.64689 3.01025 3.19754 3.24826 3.29589 3.31188 3.95825 4.24137 4.32265 4.33369 4.42417 4.52830 4.56851 4.74128 4.76603 4.88900 4.97332 5.07880 5.14802 5.17033 5.24959 5.28046 5.34231 5.36966 5.42999 5.48261 5.51667 5.56095 5.61662 5.70225 5.91478 5.95915 6.08033 6.26162 6.41136 7.20189 7.23240 7.32059 7.46404 7.60359 7.75080 7.92574 8.08506 8.51118 8.71762 8.97414 9.39868 10.91101 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.002182 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.160157 B =12827.160397 C =13731.297276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.516 3.484 3 O -0.515 6.515 4 N -0.721 5.721 5 C 0.168 3.832 6 H 0.124 0.876 7 C -0.126 4.126 8 C -0.103 4.103 9 C -0.133 4.133 10 C -0.144 4.144 11 C -0.137 4.137 12 C 0.444 3.556 13 O -0.483 6.483 14 O -0.331 6.331 15 C 0.050 3.950 16 C 0.500 3.500 17 O -0.535 6.535 18 N -0.707 5.707 19 C 0.252 3.748 20 C -0.546 4.546 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.406 0.594 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.393 0.607 44 H 0.029 0.971 45 H 0.029 0.971 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.200 -3.621 16.924 29.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.304 3.696 3 O -0.389 6.389 4 N -0.376 5.376 5 C 0.061 3.939 6 H 0.141 0.859 7 C -0.164 4.164 8 C -0.121 4.121 9 C -0.170 4.170 10 C -0.182 4.182 11 C -0.174 4.174 12 C 0.283 3.717 13 O -0.368 6.368 14 O -0.245 6.245 15 C -0.027 4.027 16 C 0.283 3.717 17 O -0.412 6.412 18 N -0.357 5.357 19 C 0.131 3.869 20 C -0.584 4.584 21 H 0.082 0.918 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.241 0.759 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.226 0.774 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.298 -3.233 17.194 29.136 hybrid contribution -0.115 0.414 -1.400 1.464 sum -23.413 -2.819 15.795 28.382 Atomic orbital electron populations 1.21906 0.91802 1.05528 1.03994 1.20677 0.90379 0.83468 0.75112 1.90732 1.70283 1.31213 1.46624 1.45752 1.04997 1.09468 1.77377 1.20398 0.81385 1.01428 0.90685 0.85870 1.22005 1.02381 1.00994 0.91044 1.22487 0.96662 0.99701 0.93273 1.22976 0.96361 1.01687 0.95987 1.22817 0.97048 1.01650 0.96662 1.22928 0.97040 1.01526 0.95934 1.24081 0.80303 0.81075 0.86232 1.90706 1.56805 1.33323 1.55946 1.86544 1.30776 1.64178 1.43042 1.22827 0.95580 0.97669 0.86643 1.19893 0.86960 0.82482 0.82340 1.90701 1.65793 1.34805 1.49912 1.46369 1.17102 1.45435 1.26809 1.19168 0.74856 0.96762 0.96073 1.21175 0.98681 1.27465 1.11072 0.91824 1.24949 0.96195 0.95241 0.97597 1.69961 1.06663 1.35675 1.39915 0.86446 0.77729 0.80039 0.82532 1.20021 1.21041 1.20043 0.89576 0.89021 0.89533 0.75867 0.88700 0.89531 0.89005 0.90243 0.91838 0.90318 0.91676 0.91317 0.90019 0.88757 0.88625 0.77439 0.95253 0.95268 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.32 36.01 0.37 -0.62 16 2 C 0.52 5.05 5.86 -10.99 -0.06 4.99 16 3 O -0.51 -7.55 12.95 -17.93 -0.23 -7.79 16 4 N -0.72 -5.40 4.34 -54.93 -0.24 -5.64 16 5 C 0.17 1.63 3.11 -69.09 -0.22 1.41 16 6 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 7 C -0.13 -1.23 4.41 -26.73 -0.12 -1.35 16 8 C -0.10 -0.75 3.52 -89.80 -0.32 -1.06 16 9 C -0.13 -0.87 6.39 -25.92 -0.17 -1.04 16 10 C -0.14 -0.92 8.08 -25.92 -0.21 -1.13 16 11 C -0.14 -1.02 7.64 -25.92 -0.20 -1.21 16 12 C 0.44 6.31 6.95 36.00 0.25 6.56 16 13 O -0.48 -8.04 13.43 -26.53 -0.36 -8.39 16 14 O -0.33 -5.35 9.75 -45.91 -0.45 -5.80 16 15 C 0.05 0.81 5.94 36.01 0.21 1.03 16 16 C 0.50 10.25 7.91 -10.99 -0.09 10.16 16 17 O -0.53 -13.15 16.50 -14.11 -0.23 -13.38 16 18 N -0.71 -14.93 5.55 -61.47 -0.34 -15.27 16 19 C 0.25 6.65 5.43 -5.19 -0.03 6.62 16 20 C -0.55 -14.75 9.28 -34.44 -0.32 -15.07 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 24 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.41 1.56 8.83 -40.82 -0.36 1.20 16 32 H 0.09 1.15 5.75 -51.93 -0.30 0.86 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.57 8.12 -51.93 -0.42 0.14 16 35 H 0.08 0.65 7.62 -51.93 -0.40 0.25 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 42 H 0.10 1.41 8.13 -51.93 -0.42 0.99 16 43 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -36.77 385.42 -8.57 -45.34 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.26 Total: 3.59 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -0.98 Total: 10.94 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.16 Total: -46.13 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.27 Total: -35.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.77 -8.57 -45.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787176377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.509 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds