Wall clock time and date at job start Fri Apr 10 2020 18:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21289 * 119.99924 * 2 1 4 4 N 1.34778 * 120.00511 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00042 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.46581 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47195 * 60.00455 * 5 4 2 8 8 C 1.53000 * 109.47060 * 64.99866 * 7 5 4 9 9 C 1.53787 * 113.61239 * 272.49590 * 8 7 5 10 10 C 1.53781 * 87.07799 * 220.02294 * 9 8 7 11 11 C 1.53776 * 87.08649 * 25.43327 * 10 9 8 12 12 C 1.50699 * 109.47310 * 300.00033 * 5 4 2 13 13 O 1.20829 * 119.99993 * 20.00270 * 12 5 4 14 14 O 1.34231 * 120.00037 * 200.00343 * 12 5 4 15 15 C 1.45201 * 116.99748 * 180.02562 * 14 12 5 16 16 C 1.50700 * 109.46863 * 179.97438 * 15 14 12 17 17 O 1.21286 * 119.99798 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00258 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00493 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47349 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99684 * 359.97438 * 20 19 18 22 22 C 1.37869 * 119.99859 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00522 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46678 * 60.00150 * 24 22 20 26 26 H 1.48497 * 109.47277 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46968 * 300.00846 * 24 22 20 28 28 H 1.08993 * 109.47207 * 240.00262 * 1 2 3 29 29 H 1.09004 * 109.47072 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46980 * 120.00179 * 1 2 3 31 31 H 0.97003 * 119.99470 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.47153 * 304.99547 * 7 5 4 33 33 H 1.09001 * 109.46832 * 184.99738 * 7 5 4 34 34 H 1.08992 * 112.85173 * 43.80170 * 8 7 5 35 35 H 1.08998 * 113.61082 * 334.56508 * 9 8 7 36 36 H 1.08997 * 113.61565 * 105.47270 * 9 8 7 37 37 H 1.09004 * 113.61390 * 270.87961 * 10 9 8 38 38 H 1.09003 * 113.61660 * 139.98542 * 10 9 8 39 39 H 1.08999 * 113.61671 * 220.02331 * 11 10 9 40 40 H 1.09001 * 113.69175 * 89.12786 * 11 10 9 41 41 H 1.09001 * 109.46938 * 299.99602 * 15 14 12 42 42 H 1.09000 * 109.47130 * 60.00038 * 15 14 12 43 43 H 0.97007 * 119.99929 * 359.97438 * 18 16 15 44 44 H 1.09001 * 109.46754 * 299.99444 * 19 18 16 45 45 H 1.09000 * 109.47244 * 59.99838 * 19 18 16 46 46 H 0.97005 * 120.00700 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 1 4.0093 -2.1947 0.0010 7 6 4.1554 -0.4456 1.2504 8 6 3.7502 -1.2356 2.4964 9 6 2.3567 -0.8677 3.0329 10 6 2.9578 -0.9764 4.4441 11 6 4.3192 -0.6588 3.8035 12 6 4.1488 -0.4569 -1.2293 13 8 3.4233 0.3016 -1.8279 14 8 5.4025 -0.6669 -1.6602 15 6 5.8191 0.0513 -2.8514 16 6 7.2452 -0.3074 -3.1812 17 8 7.8506 -1.0915 -2.4814 18 7 7.8478 0.2431 -4.2537 19 6 9.2339 -0.1060 -4.5746 20 6 9.6668 0.6405 -5.8102 21 1 8.9781 1.3078 -6.3069 22 6 10.9420 0.4714 -6.3063 23 7 11.7805 -0.3415 -5.7017 24 14 11.4784 1.3961 -7.8382 25 1 11.3791 2.8576 -7.5943 26 1 12.8835 1.0423 -8.1634 27 1 10.5986 1.0231 -8.9749 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6960 -2.0072 0.0005 32 1 3.7208 0.5530 1.2960 33 1 5.2418 -0.3673 1.2071 34 1 3.9083 -2.3085 2.3873 35 1 2.0400 0.1415 2.7697 36 1 1.5957 -1.6194 2.8233 37 1 2.8979 -1.9787 4.8683 38 1 2.6067 -0.2044 5.1289 39 1 5.1426 -1.2419 4.2161 40 1 4.5404 0.4072 3.7506 41 1 5.1730 -0.2227 -3.6855 42 1 5.7467 1.1241 -2.6728 43 1 7.3635 0.8700 -4.8136 44 1 9.8799 0.1676 -3.7404 45 1 9.3063 -1.1787 -4.7537 46 1 12.6776 -0.4608 -6.0510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787176377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:12 Heat of formation + Delta-G solvation = -170.290358 kcal Electronic energy + Delta-G solvation = -27839.054806 eV Core-core repulsion = 23728.412728 eV Total energy + Delta-G solvation = -4110.642078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.13369 -40.86986 -40.10353 -39.41014 -37.49528 -36.20060 -35.97308 -34.43453 -32.78884 -30.87612 -29.95656 -28.71973 -26.99590 -26.42944 -24.66248 -23.41954 -22.71679 -21.67344 -21.02255 -20.27849 -19.26832 -18.94566 -18.08431 -17.96479 -17.74607 -17.24888 -17.03477 -16.75982 -16.22749 -16.12443 -15.94063 -15.65599 -15.31285 -14.77525 -14.63720 -14.55084 -14.11105 -14.06109 -13.79083 -13.67935 -13.47117 -13.30065 -13.16433 -12.97570 -12.93177 -12.69667 -12.56899 -12.25537 -12.23998 -11.90788 -11.86537 -11.54065 -11.39744 -11.15562 -11.02186 -10.95195 -10.82107 -10.62661 -10.12309 -9.95566 -8.30656 -6.47507 1.06723 1.11689 1.43291 1.46709 1.51707 1.55175 1.87519 2.24001 2.35503 2.56744 3.04222 3.51965 3.61159 3.69827 3.71620 3.87305 3.96467 3.99520 4.01403 4.02298 4.12513 4.21576 4.55246 4.57986 4.71395 4.72765 4.81593 4.91166 4.92658 5.04603 5.09476 5.11148 5.16410 5.18652 5.20160 5.23274 5.38739 5.39686 5.44300 5.60845 5.68789 5.80401 6.57154 6.60874 6.64934 6.75972 7.17977 7.32520 7.41953 8.81170 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.002182 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.160157 B =12827.160397 C =13731.297276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.571 6.571 4 N -0.704 5.704 5 C 0.171 3.829 6 H 0.156 0.844 7 C -0.120 4.120 8 C -0.098 4.098 9 C -0.127 4.127 10 C -0.138 4.138 11 C -0.146 4.146 12 C 0.441 3.559 13 O -0.508 6.508 14 O -0.347 6.347 15 C 0.062 3.938 16 C 0.502 3.498 17 O -0.580 6.580 18 N -0.700 5.700 19 C 0.267 3.733 20 C -0.559 4.559 21 H 0.085 0.915 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.985 3.015 25 H -0.263 1.263 26 H -0.285 1.285 27 H -0.262 1.262 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.428 0.572 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.411 0.589 44 H -0.008 1.008 45 H -0.005 1.005 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.552 -4.150 16.522 31.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.449 6.449 4 N -0.360 5.360 5 C 0.063 3.937 6 H 0.174 0.826 7 C -0.158 4.158 8 C -0.116 4.116 9 C -0.164 4.164 10 C -0.176 4.176 11 C -0.184 4.184 12 C 0.282 3.718 13 O -0.394 6.394 14 O -0.262 6.262 15 C -0.015 4.015 16 C 0.287 3.713 17 O -0.460 6.460 18 N -0.351 5.351 19 C 0.145 3.855 20 C -0.597 4.597 21 H 0.103 0.897 22 C -0.195 4.195 23 N -0.567 5.567 24 Si 0.808 3.192 25 H -0.188 1.188 26 H -0.210 1.210 27 H -0.187 1.187 28 H 0.136 0.864 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.267 0.733 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.247 0.753 44 H 0.010 0.990 45 H 0.012 0.988 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.726 -3.781 16.793 30.954 hybrid contribution 0.596 0.564 -1.198 1.452 sum -25.130 -3.217 15.596 29.750 Atomic orbital electron populations 1.21915 0.88525 1.05659 1.06360 1.21463 0.92008 0.83018 0.73714 1.90719 1.71640 1.33279 1.49224 1.45650 1.04028 1.10138 1.76180 1.20564 0.82631 1.02345 0.88129 0.82641 1.21906 1.01182 1.00249 0.92509 1.22529 0.97164 1.00322 0.91549 1.22899 0.96411 1.01238 0.95877 1.22818 0.95773 1.02430 0.96540 1.22972 0.98067 1.00702 0.96658 1.25055 0.79142 0.80749 0.86862 1.90694 1.57188 1.34546 1.57007 1.86558 1.32226 1.64407 1.43004 1.22644 0.92396 0.98483 0.87998 1.20605 0.88524 0.81078 0.81067 1.90676 1.67360 1.36742 1.51225 1.46066 1.15452 1.45959 1.27630 1.18636 0.77121 0.94733 0.95024 1.21572 0.99391 1.27641 1.11087 0.89746 1.26046 0.96221 0.96010 1.01208 1.70119 1.07197 1.37427 1.41967 0.85202 0.77181 0.78783 0.78023 1.18802 1.21013 1.18651 0.86365 0.90110 0.87747 0.73315 0.91417 0.91123 0.86860 0.92199 0.89547 0.88756 0.91854 0.90992 0.91646 0.86129 0.87051 0.75253 0.98972 0.98751 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.32 71.24 0.74 -0.77 16 2 C 0.51 9.31 5.86 87.66 0.51 9.82 16 3 O -0.57 -17.01 12.95 19.40 0.25 -16.76 16 4 N -0.70 -8.98 4.34 -446.09 -1.94 -10.92 16 5 C 0.17 3.07 3.11 44.24 0.14 3.20 16 6 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 7 C -0.12 -2.34 4.41 30.59 0.13 -2.20 16 8 C -0.10 -1.27 3.52 -10.26 -0.04 -1.30 16 9 C -0.13 -1.42 6.39 31.12 0.20 -1.22 16 10 C -0.14 -1.52 8.08 31.12 0.25 -1.27 16 11 C -0.15 -2.10 7.64 31.12 0.24 -1.86 16 12 C 0.44 12.26 6.95 71.24 0.49 12.75 16 13 O -0.51 -16.68 13.43 29.39 0.39 -16.29 16 14 O -0.35 -11.10 9.75 -45.07 -0.44 -11.54 16 15 C 0.06 1.95 5.94 71.24 0.42 2.37 16 16 C 0.50 20.83 7.91 87.66 0.69 21.52 16 17 O -0.58 -29.49 16.50 15.75 0.26 -29.23 16 18 N -0.70 -29.86 5.55 -466.78 -2.59 -32.45 16 19 C 0.27 14.63 5.43 85.63 0.46 15.10 16 20 C -0.56 -30.34 9.28 25.60 0.24 -30.10 16 21 H 0.08 4.13 7.60 -2.91 -0.02 4.10 16 22 C 0.01 0.28 5.46 84.65 0.46 0.74 16 23 N -0.93 -55.75 13.29 21.44 0.28 -55.47 16 24 Si 0.99 42.29 29.54 68.60 2.03 44.31 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 28 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.95 8.12 -2.38 -0.02 0.93 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.43 1.74 8.83 -92.71 -0.82 0.92 16 32 H 0.07 1.73 5.75 -2.39 -0.01 1.72 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.03 8.12 -2.39 -0.02 1.01 16 35 H 0.06 0.94 7.62 -2.39 -0.02 0.92 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 41 H 0.12 3.20 8.13 -2.39 -0.02 3.18 16 42 H 0.11 3.19 8.13 -2.39 -0.02 3.17 16 43 H 0.41 14.39 8.32 -92.70 -0.77 13.62 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -84.19 385.42 2.62 -81.58 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.59 Total: 19.96 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: 4.95 Total: 26.79 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.24 Total: -98.83 kcal Atomic # 8 Polarization: -74.28 SS G_CDS: 0.47 Total: -73.81 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -84.19 2.62 -81.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787176377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.715 kcal (2) G-P(sol) polarization free energy of solvation -84.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds