Wall clock time and date at job start Fri Apr 10 2020 18:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47094 * 2 1 4 4 O 1.45198 * 109.47261 * 119.99707 * 2 1 3 5 5 C 1.34231 * 117.00265 * 269.99969 * 4 2 1 6 6 O 1.20824 * 119.99970 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99772 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.46780 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.30011 * 305.41579 * 8 7 5 10 10 C 1.52917 * 109.29947 * 186.03410 * 8 7 5 11 11 C 1.53351 * 108.67562 * 188.93403 * 10 8 7 12 12 C 1.53071 * 108.42279 * 67.53375 * 11 10 8 13 13 C 1.50175 * 109.88787 * 311.09641 * 12 11 10 14 14 O 1.21285 * 118.24584 * 197.60352 * 13 12 11 15 15 N 1.33355 * 123.51257 * 17.58760 * 13 12 11 16 16 C 1.50698 * 109.47183 * 240.00333 * 2 1 3 17 17 O 1.21285 * 119.99686 * 245.00194 * 16 2 1 18 18 N 1.34775 * 120.00318 * 64.99443 * 16 2 1 19 19 C 1.46502 * 120.00005 * 0.02562 * 18 16 2 20 20 C 1.46499 * 120.00337 * 180.02562 * 18 16 2 21 21 C 1.50701 * 109.46992 * 269.99986 * 20 18 16 22 22 H 1.07998 * 120.00129 * 0.02562 * 21 20 18 23 23 C 1.37880 * 119.99861 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99913 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99734 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47432 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46890 * 120.00210 * 25 23 21 28 28 H 1.48501 * 109.47062 * 240.00257 * 25 23 21 29 29 H 1.08999 * 109.47460 * 60.00033 * 1 2 3 30 30 H 1.08994 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46709 * 299.99711 * 1 2 3 32 32 H 1.09004 * 109.46810 * 300.00028 * 7 5 4 33 33 H 1.08993 * 109.47557 * 60.00221 * 7 5 4 34 34 H 1.08998 * 109.60455 * 308.69114 * 10 8 7 35 35 H 1.09000 * 109.60673 * 69.18122 * 10 8 7 36 36 H 1.08995 * 109.67419 * 307.80016 * 11 10 8 37 37 H 1.09002 * 109.70458 * 187.28083 * 11 10 8 38 38 H 1.09008 * 109.39774 * 190.97379 * 12 11 10 39 39 H 1.08995 * 109.40574 * 71.23141 * 12 11 10 40 40 H 0.96999 * 117.94582 * 177.79019 * 15 13 12 41 41 H 1.08996 * 109.47461 * 270.00146 * 19 18 16 42 42 H 1.08998 * 109.46888 * 29.99915 * 19 18 16 43 43 H 1.08994 * 109.47490 * 149.99977 * 19 18 16 44 44 H 1.09002 * 109.47391 * 149.99977 * 20 18 16 45 45 H 1.09001 * 109.46813 * 30.00033 * 20 18 16 46 46 H 0.97002 * 119.99768 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2172 0.0641 2.2811 6 8 1.9974 1.2518 2.2506 7 6 2.7195 -0.5770 3.5491 8 6 2.8634 0.4891 4.6371 9 1 3.4967 1.2963 4.2691 10 6 3.5135 -0.1345 5.8728 11 6 3.4477 0.8756 7.0248 12 6 1.9820 1.0551 7.4276 13 6 1.1430 1.3011 6.2066 14 8 0.0386 1.7798 6.3559 15 7 1.5473 1.0216 4.9669 16 6 2.0324 -0.7103 -1.2305 17 8 2.6530 -1.7466 -1.1215 18 7 1.7919 -0.1941 -2.4520 19 6 1.0426 1.0579 -2.5836 20 6 2.2797 -0.8850 -3.6482 21 6 3.6613 -0.3876 -3.9872 22 1 4.1294 0.3673 -3.3728 23 6 4.3283 -0.8970 -5.0812 24 7 3.7586 -1.8165 -5.8290 25 14 6.0411 -0.2809 -5.5008 26 1 6.4544 0.7457 -4.5107 27 1 6.9980 -1.4161 -5.4650 28 1 6.0328 0.3168 -6.8602 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.0106 -1.3372 3.8773 33 1 3.6885 -1.0399 3.3631 34 1 2.9763 -1.0413 6.1504 35 1 4.5544 -0.3750 5.6564 36 1 3.8584 1.8312 6.6988 37 1 4.0187 0.5015 7.8746 38 1 1.8940 1.9050 8.1046 39 1 1.6321 0.1544 7.9320 40 1 0.9267 1.1830 4.2391 41 1 -0.0215 0.8374 -2.6678 42 1 1.2165 1.6794 -1.7053 43 1 1.3753 1.5884 -3.4757 44 1 1.6071 -0.6859 -4.4825 45 1 2.3161 -1.9578 -3.4588 46 1 4.2277 -2.1746 -6.5989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808691369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:29 Heat of formation + Delta-G solvation = -163.845090 kcal Electronic energy + Delta-G solvation = -28165.747667 eV Core-core repulsion = 24055.385076 eV Total energy + Delta-G solvation = -4110.362590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.19074 -40.32173 -39.03279 -37.30493 -36.37994 -34.97751 -33.64867 -32.95912 -32.04680 -31.35332 -28.36680 -27.72848 -26.22168 -24.81053 -23.98257 -23.01222 -22.37692 -20.80254 -19.55638 -18.92992 -18.07076 -17.51588 -16.84760 -16.75371 -16.57735 -15.98748 -15.85699 -15.71821 -15.24517 -14.70532 -14.61312 -14.41313 -14.11314 -13.92090 -13.66758 -13.58184 -13.20529 -12.96093 -12.58615 -12.43516 -12.22907 -12.14306 -12.02123 -11.79772 -11.72285 -11.51673 -11.49110 -11.45577 -11.25141 -10.94499 -10.79571 -10.69574 -10.61830 -10.21594 -10.02828 -9.68140 -9.39079 -8.97413 -8.49537 -7.78411 -6.10306 -4.15372 1.98171 2.29368 2.43234 2.97299 3.19596 3.26289 3.34070 3.38338 3.76806 3.98271 4.16955 4.19248 4.34837 4.39676 4.52794 4.66330 4.71838 4.79069 4.92025 4.97996 5.01643 5.03113 5.12873 5.24455 5.29238 5.38830 5.41169 5.44559 5.46749 5.58997 5.59924 5.70117 5.80606 5.94079 6.17296 6.29006 6.54179 6.92806 7.08831 7.33650 7.40632 7.55371 7.85612 7.96039 8.15228 8.23268 8.79046 8.93985 9.49866 10.97893 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.002454 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.782439 B =11407.082107 C =12128.503367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.107 0.893 4 O -0.323 6.323 5 C 0.459 3.541 6 O -0.511 6.511 7 C -0.130 4.130 8 C 0.152 3.848 9 H 0.088 0.912 10 C -0.133 4.133 11 C -0.124 4.124 12 C -0.136 4.136 13 C 0.518 3.482 14 O -0.561 6.561 15 N -0.711 5.711 16 C 0.508 3.492 17 O -0.520 6.520 18 N -0.595 5.595 19 C 0.076 3.924 20 C 0.246 3.754 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.283 1.283 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.404 0.596 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 4.483 23.219 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.124 0.876 4 O -0.238 6.238 5 C 0.303 3.697 6 O -0.400 6.400 7 C -0.168 4.168 8 C 0.046 3.954 9 H 0.106 0.894 10 C -0.171 4.171 11 C -0.161 4.161 12 C -0.176 4.176 13 C 0.305 3.695 14 O -0.440 6.440 15 N -0.364 5.364 16 C 0.292 3.708 17 O -0.396 6.396 18 N -0.328 5.328 19 C -0.068 4.068 20 C 0.127 3.873 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.209 1.209 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.241 0.759 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.066 4.362 23.296 23.899 hybrid contribution 0.754 0.513 -0.857 1.252 sum -2.312 4.875 22.439 23.079 Atomic orbital electron populations 1.22281 0.92278 1.04073 1.04125 1.22669 0.95775 0.97624 0.82819 0.87583 1.86615 1.76143 1.41418 1.19583 1.23701 0.74308 0.85968 0.85764 1.90668 1.48476 1.16460 1.84355 1.21885 1.05735 0.99866 0.89293 1.20827 0.85091 0.95442 0.94002 0.89368 1.21965 1.02275 0.99143 0.93732 1.21658 0.95619 1.00157 0.98681 1.21667 0.94987 1.05058 0.95887 1.20213 0.87225 0.77102 0.84946 1.90771 1.22227 1.44836 1.86147 1.45693 1.16772 1.65194 1.08775 1.19755 0.81217 0.85950 0.83841 1.90706 1.39711 1.23406 1.85763 1.48077 1.53961 1.23902 1.06910 1.21850 0.95394 0.86705 1.02862 1.19368 0.94371 0.93793 0.79721 1.21450 1.00955 1.23027 1.11299 0.92388 1.24939 0.98263 0.94870 0.96026 1.69939 1.38048 1.28024 1.17227 0.86424 0.84073 0.78741 0.78080 1.19797 1.20809 1.20894 0.89203 0.90931 0.91303 0.86679 0.85498 0.90276 0.89037 0.90824 0.90073 0.88158 0.88170 0.75858 0.93073 0.92354 0.90239 0.94561 0.93629 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.27 37.16 0.34 -1.80 16 2 C 0.07 1.10 2.16 -27.88 -0.06 1.04 16 3 H 0.11 1.62 6.14 -51.93 -0.32 1.30 16 4 O -0.32 -4.96 9.42 -45.89 -0.43 -5.39 16 5 C 0.46 5.61 7.58 36.01 0.27 5.89 16 6 O -0.51 -7.01 13.78 -18.75 -0.26 -7.27 16 7 C -0.13 -0.98 5.46 -27.88 -0.15 -1.13 16 8 C 0.15 1.06 2.64 -68.38 -0.18 0.88 16 9 H 0.09 0.67 7.93 -51.93 -0.41 0.26 16 10 C -0.13 -0.56 5.30 -26.59 -0.14 -0.70 16 11 C -0.12 -0.52 6.03 -26.51 -0.16 -0.68 16 12 C -0.14 -0.85 6.03 -28.10 -0.17 -1.02 16 13 C 0.52 5.43 7.71 -11.87 -0.09 5.34 16 14 O -0.56 -8.48 17.78 5.55 0.10 -8.38 16 15 N -0.71 -6.77 5.01 -54.86 -0.27 -7.04 16 16 C 0.51 10.60 7.10 -10.99 -0.08 10.52 16 17 O -0.52 -13.19 16.09 -14.05 -0.23 -13.41 16 18 N -0.59 -12.36 2.86 -182.96 -0.52 -12.89 16 19 C 0.08 1.15 8.92 59.85 0.53 1.69 16 20 C 0.25 6.31 5.16 -5.19 -0.03 6.29 16 21 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 22 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 25 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H 0.09 1.01 5.12 -51.93 -0.27 0.75 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.29 8.11 -51.93 -0.42 -0.13 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.40 4.55 6.95 -40.82 -0.28 4.26 16 41 H 0.05 0.65 7.02 -51.93 -0.36 0.28 16 42 H 0.06 0.75 6.08 -51.93 -0.32 0.44 16 43 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 44 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -37.09 377.59 -7.49 -44.59 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.95 Total: 0.14 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -0.33 Total: 12.83 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.06 Total: -45.38 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.82 Total: -34.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.09 -7.49 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808691369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.260 kcal (2) G-P(sol) polarization free energy of solvation -37.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds