Wall clock time and date at job start Fri Apr 10 2020 18:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47094 * 2 1 4 4 O 1.45198 * 109.47261 * 119.99707 * 2 1 3 5 5 C 1.34231 * 117.00265 * 269.99969 * 4 2 1 6 6 O 1.20824 * 119.99970 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99772 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.46780 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.30011 * 305.41579 * 8 7 5 10 10 C 1.52917 * 109.29947 * 186.03410 * 8 7 5 11 11 C 1.53351 * 108.67562 * 188.93403 * 10 8 7 12 12 C 1.53071 * 108.42279 * 67.53375 * 11 10 8 13 13 C 1.50175 * 109.88787 * 311.09641 * 12 11 10 14 14 O 1.21285 * 118.24584 * 197.60352 * 13 12 11 15 15 N 1.33355 * 123.51257 * 17.58760 * 13 12 11 16 16 C 1.50698 * 109.47183 * 240.00333 * 2 1 3 17 17 O 1.21285 * 119.99686 * 245.00194 * 16 2 1 18 18 N 1.34775 * 120.00318 * 64.99443 * 16 2 1 19 19 C 1.46502 * 120.00005 * 0.02562 * 18 16 2 20 20 C 1.46499 * 120.00337 * 180.02562 * 18 16 2 21 21 C 1.50701 * 109.46992 * 269.99986 * 20 18 16 22 22 H 1.07998 * 120.00129 * 0.02562 * 21 20 18 23 23 C 1.37880 * 119.99861 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99913 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99734 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47432 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46890 * 120.00210 * 25 23 21 28 28 H 1.48501 * 109.47062 * 240.00257 * 25 23 21 29 29 H 1.08999 * 109.47460 * 60.00033 * 1 2 3 30 30 H 1.08994 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46709 * 299.99711 * 1 2 3 32 32 H 1.09004 * 109.46810 * 300.00028 * 7 5 4 33 33 H 1.08993 * 109.47557 * 60.00221 * 7 5 4 34 34 H 1.08998 * 109.60455 * 308.69114 * 10 8 7 35 35 H 1.09000 * 109.60673 * 69.18122 * 10 8 7 36 36 H 1.08995 * 109.67419 * 307.80016 * 11 10 8 37 37 H 1.09002 * 109.70458 * 187.28083 * 11 10 8 38 38 H 1.09008 * 109.39774 * 190.97379 * 12 11 10 39 39 H 1.08995 * 109.40574 * 71.23141 * 12 11 10 40 40 H 0.96999 * 117.94582 * 177.79019 * 15 13 12 41 41 H 1.08996 * 109.47461 * 270.00146 * 19 18 16 42 42 H 1.08998 * 109.46888 * 29.99915 * 19 18 16 43 43 H 1.08994 * 109.47490 * 149.99977 * 19 18 16 44 44 H 1.09002 * 109.47391 * 149.99977 * 20 18 16 45 45 H 1.09001 * 109.46813 * 30.00033 * 20 18 16 46 46 H 0.97002 * 119.99768 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2172 0.0641 2.2811 6 8 1.9974 1.2518 2.2506 7 6 2.7195 -0.5770 3.5491 8 6 2.8634 0.4891 4.6371 9 1 3.4967 1.2963 4.2691 10 6 3.5135 -0.1345 5.8728 11 6 3.4477 0.8756 7.0248 12 6 1.9820 1.0551 7.4276 13 6 1.1430 1.3011 6.2066 14 8 0.0386 1.7798 6.3559 15 7 1.5473 1.0216 4.9669 16 6 2.0324 -0.7103 -1.2305 17 8 2.6530 -1.7466 -1.1215 18 7 1.7919 -0.1941 -2.4520 19 6 1.0426 1.0579 -2.5836 20 6 2.2797 -0.8850 -3.6482 21 6 3.6613 -0.3876 -3.9872 22 1 4.1294 0.3673 -3.3728 23 6 4.3283 -0.8970 -5.0812 24 7 3.7586 -1.8165 -5.8290 25 14 6.0411 -0.2809 -5.5008 26 1 6.4544 0.7457 -4.5107 27 1 6.9980 -1.4161 -5.4650 28 1 6.0328 0.3168 -6.8602 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.0106 -1.3372 3.8773 33 1 3.6885 -1.0399 3.3631 34 1 2.9763 -1.0413 6.1504 35 1 4.5544 -0.3750 5.6564 36 1 3.8584 1.8312 6.6988 37 1 4.0187 0.5015 7.8746 38 1 1.8940 1.9050 8.1046 39 1 1.6321 0.1544 7.9320 40 1 0.9267 1.1830 4.2391 41 1 -0.0215 0.8374 -2.6678 42 1 1.2165 1.6794 -1.7053 43 1 1.3753 1.5884 -3.4757 44 1 1.6071 -0.6859 -4.4825 45 1 2.3161 -1.9578 -3.4588 46 1 4.2277 -2.1746 -6.5989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808691369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:28 Heat of formation + Delta-G solvation = -189.763365 kcal Electronic energy + Delta-G solvation = -28166.871568 eV Core-core repulsion = 24055.385076 eV Total energy + Delta-G solvation = -4111.486491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15232 -41.25806 -40.48760 -38.21963 -37.37479 -36.72069 -34.92654 -34.16947 -33.22009 -32.31299 -29.66410 -28.88219 -27.67882 -26.09947 -25.08293 -24.00756 -23.41191 -21.82176 -20.45465 -20.08487 -19.09501 -18.70045 -18.27348 -18.14262 -17.64414 -17.30789 -16.99705 -16.75604 -16.44742 -16.24498 -15.90159 -15.25730 -14.96394 -14.86484 -14.50752 -14.46018 -14.31792 -14.20748 -13.92703 -13.74995 -13.53959 -13.37343 -13.18161 -12.97734 -12.82302 -12.65942 -12.61125 -12.54795 -12.33035 -12.23951 -11.95907 -11.89992 -11.80554 -11.71209 -11.62922 -10.81294 -10.67001 -10.64086 -10.16023 -9.54432 -8.25413 -6.40079 1.02090 1.27282 1.36082 1.38107 1.49804 1.59838 1.61930 2.27920 2.30657 2.42426 3.04705 3.35245 3.38196 3.54707 3.63986 3.72018 3.81577 3.93239 3.96421 4.17256 4.21697 4.30562 4.48180 4.51758 4.57302 4.60884 4.66094 4.67850 4.84142 4.90407 4.93431 4.97479 5.06018 5.10024 5.13232 5.17434 5.29694 5.37995 5.49037 5.72905 5.76030 6.01346 6.37454 6.48859 6.61840 6.68789 7.17221 7.18203 7.33905 8.82172 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.002454 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.782439 B =11407.082107 C =12128.503367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 H 0.115 0.885 4 O -0.343 6.343 5 C 0.455 3.545 6 O -0.528 6.528 7 C -0.123 4.123 8 C 0.151 3.849 9 H 0.082 0.918 10 C -0.129 4.129 11 C -0.118 4.118 12 C -0.131 4.131 13 C 0.511 3.489 14 O -0.618 6.618 15 N -0.711 5.711 16 C 0.499 3.501 17 O -0.577 6.577 18 N -0.600 5.600 19 C 0.069 3.931 20 C 0.259 3.741 21 C -0.545 4.545 22 H 0.052 0.948 23 C 0.009 3.991 24 N -0.926 5.926 25 Si 0.968 3.032 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.269 1.269 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.392 0.608 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.032 0.968 45 H 0.002 0.998 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 5.282 24.904 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.133 0.867 4 O -0.259 6.259 5 C 0.300 3.700 6 O -0.418 6.418 7 C -0.160 4.160 8 C 0.046 3.954 9 H 0.100 0.900 10 C -0.166 4.166 11 C -0.156 4.156 12 C -0.171 4.171 13 C 0.300 3.700 14 O -0.501 6.501 15 N -0.361 5.361 16 C 0.286 3.714 17 O -0.457 6.457 18 N -0.332 5.332 19 C -0.073 4.073 20 C 0.139 3.861 21 C -0.584 4.584 22 H 0.070 0.930 23 C -0.190 4.190 24 N -0.566 5.566 25 Si 0.792 3.208 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.194 1.194 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.227 0.773 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.020 0.980 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.942 5.194 24.989 25.597 hybrid contribution 0.376 0.270 -1.388 1.463 sum -1.567 5.464 23.601 24.275 Atomic orbital electron populations 1.22281 0.89586 1.04332 1.05764 1.22487 0.97552 0.96675 0.81103 0.86736 1.86632 1.76724 1.42430 1.20090 1.24644 0.73541 0.85895 0.85942 1.90657 1.49267 1.17318 1.84541 1.22081 1.07089 1.00109 0.86730 1.21031 0.83791 0.95264 0.95315 0.90028 1.22022 1.03407 0.99192 0.91978 1.21673 0.94125 1.00166 0.99608 1.21716 0.95708 1.05877 0.93756 1.21034 0.86903 0.75900 0.86143 1.90737 1.24825 1.47574 1.86989 1.45858 1.17448 1.64507 1.08270 1.20661 0.80121 0.85436 0.85155 1.90662 1.42279 1.26029 1.86757 1.48059 1.54076 1.25294 1.05771 1.22178 0.96466 0.84584 1.04065 1.18856 0.93926 0.91832 0.81529 1.21697 1.02098 1.23078 1.11487 0.92996 1.25847 1.02425 0.94920 0.95856 1.70046 1.39813 1.28988 1.17718 0.85360 0.78780 0.78224 0.78394 1.19247 1.20610 1.19360 0.87600 0.91403 0.89533 0.84978 0.83129 0.89094 0.86711 0.91322 0.87458 0.87989 0.86464 0.77294 0.89844 0.89505 0.90681 0.94973 0.98011 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.27 71.98 0.67 -3.15 16 2 C 0.08 2.48 2.16 29.85 0.06 2.54 16 3 H 0.12 3.33 6.14 -2.38 -0.01 3.32 16 4 O -0.34 -10.35 9.42 -45.09 -0.42 -10.78 16 5 C 0.45 10.59 7.58 71.24 0.54 11.13 16 6 O -0.53 -13.99 13.78 21.97 0.30 -13.69 16 7 C -0.12 -1.57 5.46 29.85 0.16 -1.41 16 8 C 0.15 1.78 2.64 45.10 0.12 1.90 16 9 H 0.08 1.11 7.93 -2.39 -0.02 1.09 16 10 C -0.13 -0.62 5.30 30.68 0.16 -0.46 16 11 C -0.12 -0.62 6.03 30.74 0.19 -0.44 16 12 C -0.13 -1.38 6.03 29.71 0.18 -1.20 16 13 C 0.51 10.44 7.71 87.71 0.68 11.12 16 14 O -0.62 -19.13 17.78 -3.05 -0.05 -19.18 16 15 N -0.71 -12.91 5.01 -446.65 -2.24 -15.15 16 16 C 0.50 21.19 7.10 87.66 0.62 21.81 16 17 O -0.58 -30.50 16.09 15.70 0.25 -30.25 16 18 N -0.60 -25.20 2.86 -851.14 -2.43 -27.63 16 19 C 0.07 1.99 8.92 127.77 1.14 3.13 16 20 C 0.26 13.81 5.16 85.63 0.44 14.25 16 21 C -0.55 -31.16 9.39 25.60 0.24 -30.92 16 22 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 23 C 0.01 0.50 5.46 84.66 0.46 0.96 16 24 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 25 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 29 H 0.11 2.10 5.12 -2.39 -0.01 2.09 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 0.29 8.11 -2.39 -0.02 0.27 16 35 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.07 0.46 8.13 -2.39 -0.02 0.44 16 37 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.39 8.77 6.95 -92.71 -0.64 8.12 16 41 H 0.08 1.90 7.02 -2.39 -0.02 1.88 16 42 H 0.09 2.03 6.08 -2.39 -0.01 2.01 16 43 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 44 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 45 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 46 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -85.56 377.59 3.74 -81.82 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.36 Total: 14.14 kcal Atomic # 6 Polarization: 23.61 SS G_CDS: 5.66 Total: 29.28 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -4.38 Total: -97.78 kcal Atomic # 8 Polarization: -73.98 SS G_CDS: 0.08 Total: -73.90 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -85.56 3.74 -81.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808691369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.942 kcal (2) G-P(sol) polarization free energy of solvation -85.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds