Wall clock time and date at job start Fri Apr 10 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 120.00220 * 2 1 4 4 H 1.48498 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46905 * 300.00484 * 3 2 1 6 6 H 1.48491 * 109.47047 * 60.00224 * 3 2 1 7 7 C 1.38958 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00253 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99616 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00002 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99600 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00015 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47200 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00199 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47141 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47094 * 179.97438 * 15 14 13 17 17 C 1.34782 * 119.99866 * 179.97438 * 16 15 14 18 18 O 1.21283 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99894 * 180.02562 * 17 16 15 20 20 N 1.46499 * 109.46867 * 180.02562 * 19 17 16 21 21 C 1.34777 * 119.99553 * 180.02562 * 20 19 17 22 22 O 1.21278 * 120.00088 * 359.97438 * 21 20 19 23 23 C 1.50703 * 119.99745 * 179.97438 * 21 20 19 24 24 C 1.53781 * 113.61417 * 179.97438 * 23 21 20 25 25 C 1.53786 * 87.17350 * 139.93966 * 24 23 21 26 26 C 1.53782 * 113.61283 * 277.49692 * 23 21 20 27 27 H 0.97001 * 120.00335 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00107 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46734 * 60.00780 * 12 10 9 30 30 H 1.09000 * 109.47560 * 300.00814 * 12 10 9 31 31 H 1.00903 * 110.99813 * 303.96343 * 13 12 10 32 32 H 1.08994 * 109.47170 * 60.00151 * 14 13 12 33 33 H 1.09004 * 109.46861 * 299.99958 * 14 13 12 34 34 H 1.09000 * 109.47314 * 59.99493 * 15 14 13 35 35 H 1.09005 * 109.46823 * 300.00386 * 15 14 13 36 36 H 0.97001 * 120.00139 * 359.97438 * 16 15 14 37 37 H 1.08994 * 109.47197 * 59.99893 * 19 17 16 38 38 H 1.09004 * 109.46854 * 299.99689 * 19 17 16 39 39 H 0.96993 * 120.00243 * 359.97438 * 20 19 17 40 40 H 1.08996 * 112.85169 * 48.79875 * 23 21 20 41 41 H 1.09002 * 113.61445 * 254.52965 * 24 23 21 42 42 H 1.09002 * 113.61408 * 25.34696 * 24 23 21 43 43 H 1.08993 * 113.61491 * 89.15923 * 25 24 23 44 44 H 1.09000 * 113.61138 * 220.06261 * 25 24 23 45 45 H 1.08997 * 113.61668 * 334.56418 * 26 23 21 46 46 H 1.08998 * 113.61674 * 105.38927 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0010 13 7 2.1982 -5.9795 -0.0017 14 6 1.4978 -7.2709 -0.0018 15 6 2.5227 -8.4069 -0.0019 16 7 1.8243 -9.6946 -0.0014 17 6 2.5291 -10.8435 -0.0019 18 8 3.7415 -10.8112 -0.0033 19 6 1.8107 -12.1682 -0.0019 20 7 2.7921 -13.2559 -0.0019 21 6 2.3768 -14.5381 -0.0025 22 8 1.1907 -14.7914 -0.0025 23 6 3.3863 -15.6571 -0.0031 24 6 2.7527 -17.0583 -0.0030 25 6 3.8548 -17.4734 -0.9921 26 6 3.9353 -15.9906 -1.4003 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.6160 -4.9204 -0.8904 30 1 0.6179 -4.9208 0.8896 31 1 2.8325 -5.9124 -0.7835 32 1 0.8726 -7.3450 -0.8915 33 1 0.8733 -7.3455 0.8885 34 1 3.1478 -8.3325 0.8880 35 1 3.1476 -8.3323 -0.8920 36 1 0.8547 -9.7205 -0.0006 37 1 1.1855 -12.2424 -0.8916 38 1 1.1862 -12.2428 0.8883 39 1 3.7406 -13.0533 -0.0023 40 1 4.1611 -15.5285 0.7526 41 1 2.8160 -17.5661 0.9594 42 1 1.7502 -17.0842 -0.4302 43 1 4.7591 -17.8425 -0.5085 44 1 3.5022 -18.1282 -1.7889 45 1 3.2568 -15.7249 -2.2109 46 1 4.9524 -15.6356 -1.5660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152303742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:18 Heat of formation + Delta-G solvation = -92.580005 kcal Electronic energy + Delta-G solvation = -25709.664326 eV Core-core repulsion = 21634.684773 eV Total energy + Delta-G solvation = -4074.979553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86191 -39.95599 -38.37243 -37.84497 -36.47124 -34.85074 -34.49583 -33.80190 -31.27928 -30.27894 -28.65967 -26.63280 -26.10475 -25.59597 -23.87818 -22.24591 -21.43820 -20.97009 -19.90837 -19.32690 -18.42232 -17.93607 -16.97084 -16.82034 -16.54219 -16.03422 -15.95281 -15.85828 -15.65065 -14.94521 -14.84509 -14.55169 -14.12302 -14.10357 -13.68739 -13.50965 -13.33605 -13.18819 -13.03907 -12.94392 -12.50967 -12.38970 -11.98787 -11.69395 -11.57518 -11.52305 -11.49370 -11.07598 -11.04400 -10.90044 -10.41369 -10.36144 -10.25193 -10.16010 -9.64041 -9.55209 -9.43024 -8.55125 -8.18409 -7.99789 -6.44904 -3.85729 2.12161 2.21245 2.35508 3.00617 3.14528 3.25540 3.32911 3.86273 3.99117 4.04626 4.08537 4.17110 4.25929 4.31690 4.37602 4.65347 4.77125 4.82918 4.90710 4.91502 5.07381 5.12537 5.19171 5.22506 5.28861 5.30516 5.40103 5.47912 5.58895 5.66680 5.70611 5.80339 5.84402 5.89221 5.94582 6.00186 6.20754 6.97933 7.05343 7.07776 7.50408 7.52784 7.72001 7.78207 8.03051 8.57511 9.14818 9.50443 10.01572 10.72841 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.057532 B = 0.001311 C = 0.001290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.566407 B =21357.619171 C =21702.886086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.049 3.951 15 C 0.120 3.880 16 N -0.722 5.722 17 C 0.509 3.491 18 O -0.535 6.535 19 C 0.099 3.901 20 N -0.718 5.718 21 C 0.525 3.475 22 O -0.541 6.541 23 C -0.138 4.138 24 C -0.118 4.118 25 C -0.142 4.142 26 C -0.124 4.124 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.352 0.648 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.404 0.596 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.413 0.587 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 -31.332 -1.643 31.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.082 4.082 15 C -0.004 4.004 16 N -0.374 5.374 17 C 0.294 3.706 18 O -0.412 6.412 19 C -0.029 4.029 20 N -0.373 5.373 21 C 0.312 3.688 22 O -0.418 6.418 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.180 4.180 26 C -0.162 4.162 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.172 0.828 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.238 0.762 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.251 0.749 40 H 0.133 0.867 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.561 -31.264 -0.963 31.318 hybrid contribution -0.720 1.172 -0.827 1.605 sum 0.841 -30.092 -1.790 30.157 Atomic orbital electron populations 1.69613 1.05963 1.28108 1.50593 1.25264 0.95628 0.99745 0.97242 0.85798 0.79752 0.81076 0.77719 1.19172 1.20759 1.20714 1.19768 0.93440 0.82194 1.47542 0.87816 1.41859 1.09201 1.04595 1.64266 1.19766 0.88394 0.84694 0.84696 1.90533 1.13722 1.87013 1.55370 1.21672 0.94196 0.90781 1.01377 1.59940 1.18899 0.99420 1.51593 1.22083 0.95504 0.89404 1.01164 1.21342 0.95025 0.80352 1.03674 1.45804 1.10629 1.05845 1.75131 1.20469 0.88059 0.85753 0.76351 1.90732 1.13727 1.87281 1.49440 1.21058 0.92182 0.84647 1.04977 1.45769 1.11068 1.04774 1.75689 1.20586 0.89878 0.83142 0.75182 1.90700 1.17653 1.83947 1.49522 1.22808 0.98461 0.93876 1.00811 1.22815 0.99479 0.92897 1.00345 1.22872 0.99378 0.96150 0.99567 1.22874 1.01749 0.96758 0.94817 0.91894 0.77454 0.93669 0.89427 0.82790 0.94805 0.90350 0.89921 0.91093 0.76189 0.88286 0.88204 0.74884 0.86695 0.90915 0.88661 0.89766 0.90848 0.89645 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.02 5.29 -10.97 -0.06 -14.08 16 10 C 0.44 10.16 7.82 -10.98 -0.09 10.07 16 11 O -0.58 -15.65 15.78 5.55 0.09 -15.57 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 N -0.67 -10.02 6.13 -115.06 -0.70 -10.72 16 14 C 0.05 0.50 5.80 -3.82 -0.02 0.48 16 15 C 0.12 1.21 5.93 -4.04 -0.02 1.18 16 16 N -0.72 -5.52 5.56 -60.29 -0.33 -5.85 16 17 C 0.51 4.59 7.90 -10.98 -0.09 4.50 16 18 O -0.54 -6.77 15.67 5.56 0.09 -6.68 16 19 C 0.10 0.70 6.15 -5.19 -0.03 0.67 16 20 N -0.72 -5.57 5.53 -61.47 -0.34 -5.91 16 21 C 0.53 4.54 7.35 -10.98 -0.08 4.46 16 22 O -0.54 -6.45 15.90 5.56 0.09 -6.37 16 23 C -0.14 -0.82 4.15 -90.96 -0.38 -1.20 16 24 C -0.12 -0.69 7.40 -25.92 -0.19 -0.89 16 25 C -0.14 -0.63 8.10 -25.80 -0.21 -0.84 16 26 C -0.12 -0.62 7.64 -25.80 -0.20 -0.82 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 1.91 8.47 -40.82 -0.35 1.56 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.41 3.07 7.44 -40.82 -0.30 2.76 16 40 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.71 7.43 -51.93 -0.39 0.33 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -34.97 392.43 -8.25 -43.22 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -7.12 Total: 13.18 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -1.58 Total: 10.55 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.71 Total: -60.08 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: 0.26 Total: -28.61 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.97 -8.25 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152303742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.361 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds