Wall clock time and date at job start Fri Apr 10 2020 18:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46897 * 109.47224 * 179.97438 * 8 7 6 10 10 C 1.46898 * 110.99983 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47235 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47087 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.46902 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99984 * 179.97438 * 13 12 11 15 15 O 1.21285 * 120.00259 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00276 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47500 * 180.02562 * 16 14 13 18 18 C 1.76191 * 100.00298 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99750 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00165 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99587 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46931 * 90.00109 * 22 20 18 24 24 H 1.48500 * 109.47113 * 209.99826 * 22 20 18 25 25 H 1.48493 * 109.47541 * 330.00468 * 22 20 18 26 26 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 27 27 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 28 28 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 29 29 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 30 30 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 31 31 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 32 32 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 33 33 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 34 34 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 35 35 H 1.00902 * 111.00097 * 56.03978 * 9 8 7 36 36 H 1.09001 * 109.47373 * 299.99945 * 10 9 8 37 37 H 1.09002 * 109.47013 * 60.00456 * 10 9 8 38 38 H 1.08994 * 109.47442 * 300.00614 * 11 10 9 39 39 H 1.09002 * 109.46499 * 60.00446 * 11 10 9 40 40 H 1.09001 * 109.47312 * 300.00123 * 12 11 10 41 41 H 1.09002 * 109.47032 * 60.00206 * 12 11 10 42 42 H 0.97005 * 120.00186 * 0.02562 * 13 12 11 43 43 H 1.09001 * 109.47120 * 300.00745 * 16 14 13 44 44 H 1.09002 * 109.46417 * 60.00736 * 16 14 13 45 45 H 0.96995 * 119.99901 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3110 -4.4482 1.4363 10 6 1.2645 -4.9863 2.8024 11 6 0.7915 -6.4409 2.7618 12 6 0.7425 -7.0011 4.1847 13 7 0.2902 -8.3941 4.1457 14 6 0.1704 -9.0959 5.2899 15 8 0.4365 -8.5743 6.3521 16 6 -0.2954 -10.5286 5.2500 17 16 -0.3533 -11.1915 6.9331 18 6 -0.9115 -12.8287 6.5982 19 1 -1.1041 -13.1361 5.5809 20 6 -1.1039 -13.7236 7.6417 21 7 -1.5204 -14.9468 7.3914 22 14 -0.7701 -13.1922 9.4011 23 1 -2.0090 -12.6233 9.9898 24 1 -0.3370 -14.3671 10.1994 25 1 0.3009 -12.1637 9.4129 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 4.4053 1.3713 0.0112 30 1 4.4212 -1.2961 -0.0013 31 1 0.7995 -2.5863 -0.4346 32 1 2.4874 -3.1293 -0.5903 33 1 2.7594 -2.9894 1.8704 34 1 1.0715 -2.4464 2.0262 35 1 1.8971 -5.0169 0.8437 36 1 2.2593 -4.9396 3.2454 37 1 0.5716 -4.3961 3.4020 38 1 -0.2033 -6.4873 2.3189 39 1 1.4842 -7.0314 2.1621 40 1 1.7372 -6.9548 4.6280 41 1 0.0497 -6.4104 4.7841 42 1 0.0777 -8.8114 3.2962 43 1 -1.2903 -10.5750 4.8071 44 1 0.3972 -11.1191 4.6502 45 1 -1.6544 -15.5722 8.1206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:26 Heat of formation + Delta-G solvation = 28.195757 kcal Electronic energy + Delta-G solvation = -23119.373493 eV Core-core repulsion = 19492.384040 eV Total energy + Delta-G solvation = -3626.989452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68235 -39.32529 -37.58858 -35.36813 -33.90135 -33.11957 -32.44606 -31.27961 -29.39345 -27.98204 -27.17278 -25.64268 -24.69011 -22.89868 -21.88566 -21.58746 -20.45004 -20.06540 -17.86503 -17.25418 -16.79922 -16.37210 -16.12702 -15.98752 -15.63317 -15.11755 -14.94778 -14.92332 -14.66130 -14.31844 -14.13231 -13.78770 -13.40451 -13.26801 -13.21875 -12.89779 -12.84635 -12.79504 -12.41084 -12.09609 -11.93639 -11.84361 -11.70263 -11.27033 -11.19281 -11.04407 -11.01217 -10.61132 -9.86488 -9.72942 -9.54463 -9.04564 -9.00992 -8.97097 -8.96348 -8.50838 -6.92637 -6.29608 -4.01402 1.38844 2.06208 2.39214 2.74897 2.96516 3.25124 3.32903 3.49948 3.52005 3.71324 4.09424 4.23501 4.32652 4.35770 4.47428 4.62885 4.67121 4.69295 4.71139 4.77241 4.84719 4.90780 5.00080 5.04998 5.09561 5.18132 5.28955 5.30086 5.30759 5.34486 5.38680 5.48998 5.72771 5.74040 5.82960 5.88447 6.00561 6.21057 6.39157 6.52342 6.53264 6.80869 7.26785 7.59466 7.93464 8.40895 8.47815 9.16660 10.79647 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.045811 B = 0.001334 C = 0.001326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.065707 B =20985.274430 C =21111.616787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.371 5.371 3 N -0.300 5.300 4 C 0.046 3.954 5 C -0.273 4.273 6 C 0.088 3.912 7 C -0.056 4.056 8 C 0.066 3.934 9 N -0.690 5.690 10 C 0.062 3.938 11 C -0.129 4.129 12 C 0.122 3.878 13 N -0.737 5.737 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.183 0.817 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.343 0.657 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 28.170 -19.299 34.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.153 5.153 3 N -0.121 5.121 4 C -0.139 4.139 5 C -0.302 4.302 6 C -0.040 4.040 7 C -0.096 4.096 8 C -0.064 4.064 9 N -0.321 5.321 10 C -0.067 4.067 11 C -0.167 4.167 12 C -0.002 4.002 13 N -0.392 5.392 14 C 0.316 3.684 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.200 0.800 30 H 0.164 0.836 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.155 30.058 -17.456 35.300 hybrid contribution 1.108 -1.625 -0.711 2.091 sum 7.263 28.433 -18.168 34.515 Atomic orbital electron populations 1.21892 0.74296 1.04583 1.03640 1.48533 1.06617 1.03396 1.56772 1.77398 1.01938 1.07894 1.24889 1.23857 0.95245 0.95132 0.99689 1.21279 0.96293 0.95109 1.17569 1.20987 0.91317 0.90296 1.01449 1.20216 1.03035 0.88330 0.97994 1.21861 0.99334 0.89684 0.95534 1.60438 1.57813 1.02625 1.11248 1.21846 1.00192 0.95085 0.89605 1.21741 1.03169 0.95255 0.96511 1.21192 1.00367 0.82260 0.96415 1.45940 1.70661 1.13060 1.09498 1.20292 0.76823 0.87840 0.83485 1.90701 1.48322 1.70904 1.29573 1.23281 1.04681 0.94394 1.05135 1.84789 1.88660 1.13831 1.04332 1.22320 1.51637 0.94902 0.98099 0.89383 1.24707 0.93303 0.93962 0.99277 1.69935 1.44042 1.04572 1.33148 0.86735 0.81022 0.79834 0.84264 1.19200 1.19925 1.15943 0.90555 0.89228 0.89260 0.79992 0.83586 0.89666 0.89112 0.94305 0.90909 0.83934 0.94569 0.90501 0.90206 0.91241 0.91720 0.91526 0.76610 0.88464 0.88448 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.27 59.85 0.67 1.09 16 2 N -0.37 -2.86 4.01 -63.89 -0.26 -3.12 16 3 N -0.30 -2.89 12.58 30.63 0.39 -2.50 16 4 C 0.05 0.36 12.03 -17.36 -0.21 0.15 16 5 C -0.27 -1.91 10.72 -40.01 -0.43 -2.34 16 6 C 0.09 0.59 6.19 -82.27 -0.51 0.09 16 7 C -0.06 -0.25 5.76 -27.88 -0.16 -0.41 16 8 C 0.07 0.34 5.67 -3.82 -0.02 0.31 16 9 N -0.69 -3.64 6.50 -113.78 -0.74 -4.38 16 10 C 0.06 0.38 5.68 -3.82 -0.02 0.36 16 11 C -0.13 -0.85 5.59 -26.73 -0.15 -1.00 16 12 C 0.12 1.24 5.67 -4.04 -0.02 1.22 16 13 N -0.74 -8.92 5.56 -60.29 -0.33 -9.25 16 14 C 0.53 9.26 7.85 -10.99 -0.09 9.18 16 15 O -0.52 -11.19 15.86 5.55 0.09 -11.10 16 16 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 17 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 18 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 22 Si 0.86 21.74 27.74 -169.99 -4.71 17.02 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.22 6.98 -51.92 -0.36 -0.15 16 29 H 0.18 0.85 8.06 -52.48 -0.42 0.42 16 30 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.08 0.34 6.95 -51.93 -0.36 -0.02 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.34 1.43 8.73 -39.29 -0.34 1.09 16 36 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 43 H 0.10 1.72 8.14 -51.91 -0.42 1.29 16 44 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -36.59 393.26 -8.69 -45.28 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.33 Total: -1.09 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.50 Total: -5.48 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.17 Total: -44.96 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.59 -8.69 -45.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.476 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds