Wall clock time and date at job start Fri Apr 10 2020 18:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46897 * 109.47224 * 179.97438 * 8 7 6 10 10 C 1.46898 * 110.99983 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47235 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47087 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.46902 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99984 * 179.97438 * 13 12 11 15 15 O 1.21285 * 120.00259 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00276 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47500 * 180.02562 * 16 14 13 18 18 C 1.76191 * 100.00298 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99750 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00165 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99587 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46931 * 90.00109 * 22 20 18 24 24 H 1.48500 * 109.47113 * 209.99826 * 22 20 18 25 25 H 1.48493 * 109.47541 * 330.00468 * 22 20 18 26 26 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 27 27 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 28 28 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 29 29 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 30 30 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 31 31 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 32 32 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 33 33 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 34 34 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 35 35 H 1.00902 * 111.00097 * 56.03978 * 9 8 7 36 36 H 1.09001 * 109.47373 * 299.99945 * 10 9 8 37 37 H 1.09002 * 109.47013 * 60.00456 * 10 9 8 38 38 H 1.08994 * 109.47442 * 300.00614 * 11 10 9 39 39 H 1.09002 * 109.46499 * 60.00446 * 11 10 9 40 40 H 1.09001 * 109.47312 * 300.00123 * 12 11 10 41 41 H 1.09002 * 109.47032 * 60.00206 * 12 11 10 42 42 H 0.97005 * 120.00186 * 0.02562 * 13 12 11 43 43 H 1.09001 * 109.47120 * 300.00745 * 16 14 13 44 44 H 1.09002 * 109.46417 * 60.00736 * 16 14 13 45 45 H 0.96995 * 119.99901 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3110 -4.4482 1.4363 10 6 1.2645 -4.9863 2.8024 11 6 0.7915 -6.4409 2.7618 12 6 0.7425 -7.0011 4.1847 13 7 0.2902 -8.3941 4.1457 14 6 0.1704 -9.0959 5.2899 15 8 0.4365 -8.5743 6.3521 16 6 -0.2954 -10.5286 5.2500 17 16 -0.3533 -11.1915 6.9331 18 6 -0.9115 -12.8287 6.5982 19 1 -1.1041 -13.1361 5.5809 20 6 -1.1039 -13.7236 7.6417 21 7 -1.5204 -14.9468 7.3914 22 14 -0.7701 -13.1922 9.4011 23 1 -2.0090 -12.6233 9.9898 24 1 -0.3370 -14.3671 10.1994 25 1 0.3009 -12.1637 9.4129 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 4.4053 1.3713 0.0112 30 1 4.4212 -1.2961 -0.0013 31 1 0.7995 -2.5863 -0.4346 32 1 2.4874 -3.1293 -0.5903 33 1 2.7594 -2.9894 1.8704 34 1 1.0715 -2.4464 2.0262 35 1 1.8971 -5.0169 0.8437 36 1 2.2593 -4.9396 3.2454 37 1 0.5716 -4.3961 3.4020 38 1 -0.2033 -6.4873 2.3189 39 1 1.4842 -7.0314 2.1621 40 1 1.7372 -6.9548 4.6280 41 1 0.0497 -6.4104 4.7841 42 1 0.0777 -8.8114 3.2962 43 1 -1.2903 -10.5750 4.8071 44 1 0.3972 -11.1191 4.6502 45 1 -1.6544 -15.5722 8.1206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154814692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:25 Heat of formation + Delta-G solvation = 0.652894 kcal Electronic energy + Delta-G solvation = -23120.567841 eV Core-core repulsion = 19492.384040 eV Total energy + Delta-G solvation = -3628.183800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17624 -40.64122 -38.12668 -36.28105 -34.66976 -34.46938 -33.71235 -32.14343 -30.53817 -28.64415 -27.84414 -27.57792 -25.42922 -23.34731 -22.54285 -22.09838 -21.71200 -20.55052 -19.85673 -17.83337 -17.72232 -17.39759 -17.19631 -17.01660 -16.68283 -16.42454 -15.82232 -15.65207 -15.54607 -15.24115 -14.96799 -14.81502 -14.62024 -14.46934 -14.09934 -13.63279 -13.61759 -13.35030 -13.27003 -13.22269 -13.00509 -12.79393 -12.74273 -12.50022 -12.41626 -12.19446 -11.85840 -11.77290 -11.55985 -11.16634 -11.00805 -10.52867 -10.24766 -10.12663 -9.47714 -9.43083 -8.99185 -8.51103 -6.21900 0.88505 1.00067 1.31892 1.47506 1.56762 1.57421 1.65131 1.87409 2.22760 2.27139 2.72382 2.87364 3.09313 3.70855 3.81708 3.86596 3.95740 4.02977 4.16145 4.23017 4.24021 4.26537 4.34350 4.37798 4.48641 4.55233 4.57823 4.63477 4.66212 4.72272 4.79492 4.83165 4.91377 5.03278 5.18659 5.22120 5.29446 5.44887 5.71245 5.72717 5.96057 6.10950 6.11964 6.45773 6.50117 6.74695 6.94330 7.21215 8.61281 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.045811 B = 0.001334 C = 0.001326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.065707 B =20985.274430 C =21111.616787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.379 5.379 3 N -0.343 5.343 4 C 0.037 3.963 5 C -0.288 4.288 6 C 0.085 3.915 7 C -0.047 4.047 8 C 0.072 3.928 9 N -0.688 5.688 10 C 0.065 3.935 11 C -0.113 4.113 12 C 0.121 3.879 13 N -0.711 5.711 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.112 4.112 17 S -0.179 6.179 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.237 1.237 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.203 0.797 30 H 0.162 0.838 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.352 0.648 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.418 0.582 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 28.851 -20.433 36.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.162 5.162 3 N -0.165 5.165 4 C -0.147 4.147 5 C -0.317 4.317 6 C -0.044 4.044 7 C -0.086 4.086 8 C -0.058 4.058 9 N -0.320 5.320 10 C -0.065 4.065 11 C -0.151 4.151 12 C -0.003 4.003 13 N -0.365 5.365 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.262 4.262 17 S 0.048 5.952 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.220 0.780 30 H 0.180 0.820 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.171 0.829 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.255 0.745 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.570 30.748 -18.659 36.561 hybrid contribution 0.975 -1.770 -0.526 2.088 sum 7.545 28.977 -19.185 35.562 Atomic orbital electron populations 1.22128 0.72914 1.05716 1.04328 1.48817 1.07602 1.03217 1.56591 1.77326 1.02992 1.09504 1.26689 1.24317 0.95437 0.96039 0.98951 1.21599 0.97152 0.95105 1.17854 1.21397 0.91350 0.91085 1.00522 1.20206 1.03809 0.86934 0.97684 1.21759 0.98748 0.89474 0.95804 1.60392 1.58150 1.02738 1.10728 1.21763 0.99945 0.94661 0.90129 1.21601 1.03984 0.95442 0.94050 1.21338 0.99541 0.80695 0.98755 1.45725 1.68528 1.13549 1.08696 1.19982 0.76748 0.87237 0.84211 1.90691 1.50782 1.71538 1.31455 1.23280 1.06442 0.95662 1.00857 1.84728 1.88519 1.11952 1.10023 1.22468 1.51338 0.96805 0.97086 0.91879 1.25543 0.93154 0.94025 1.03119 1.70011 1.45176 1.05649 1.34646 0.85876 0.80919 0.79822 0.79809 1.18725 1.18323 1.16138 0.90070 0.89088 0.87190 0.78029 0.82047 0.88865 0.87667 0.94742 0.91942 0.82900 0.94694 0.91209 0.89635 0.89698 0.92429 0.92460 0.74458 0.86750 0.86678 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 11.27 127.77 1.44 2.13 16 2 N -0.38 -5.62 4.01 -356.04 -1.43 -7.04 16 3 N -0.34 -6.62 12.58 -57.02 -0.72 -7.33 16 4 C 0.04 0.56 12.03 85.23 1.02 1.58 16 5 C -0.29 -3.74 10.72 21.99 0.24 -3.51 16 6 C 0.09 1.05 6.19 41.41 0.26 1.30 16 7 C -0.05 -0.31 5.76 29.85 0.17 -0.14 16 8 C 0.07 0.59 5.67 86.31 0.49 1.08 16 9 N -0.69 -5.38 6.50 -513.88 -3.34 -8.72 16 10 C 0.06 0.65 5.68 86.30 0.49 1.14 16 11 C -0.11 -1.14 5.59 30.60 0.17 -0.97 16 12 C 0.12 2.19 5.67 86.38 0.49 2.68 16 13 N -0.71 -15.31 5.56 -463.05 -2.57 -17.89 16 14 C 0.53 17.72 7.85 87.66 0.69 18.41 16 15 O -0.57 -23.91 15.86 -3.05 -0.05 -23.96 16 16 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 17 S -0.18 -8.97 18.55 -56.49 -1.05 -10.01 16 18 C -0.53 -30.61 10.04 67.96 0.68 -29.93 16 19 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.75 5.50 84.86 0.47 3.21 16 21 N -0.92 -55.54 13.97 21.65 0.30 -55.24 16 22 Si 0.91 44.81 27.74 68.60 1.90 46.71 16 23 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 26 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.11 0.34 6.98 -2.38 -0.02 0.32 16 29 H 0.20 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.09 0.48 6.95 -2.39 -0.02 0.47 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.35 1.78 8.73 -89.69 -0.78 0.99 16 36 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.42 6.12 8.47 -92.70 -0.79 5.33 16 43 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 44 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 45 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -79.82 393.26 -0.52 -80.34 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -0.61 Total: 9.79 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 7.05 Total: -6.65 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -7.76 Total: -96.22 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.01 kcal Total: -79.82 -0.52 -80.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.994 kcal (2) G-P(sol) polarization free energy of solvation -79.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds