Wall clock time and date at job start Fri Apr 10 2020 18:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00064 * 2 1 4 4 H 1.48499 * 109.46964 * 270.00279 * 3 2 1 5 5 H 1.48502 * 109.46799 * 29.99984 * 3 2 1 6 6 H 1.48495 * 109.47300 * 150.00147 * 3 2 1 7 7 C 1.38954 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 N 1.46507 * 109.47485 * 179.97438 * 16 15 14 18 18 C 1.34770 * 119.99912 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00222 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00019 * 180.02562 * 18 17 16 21 21 H 1.08995 * 112.85223 * 308.31046 * 20 18 17 22 22 C 1.53788 * 113.61284 * 79.50483 * 20 18 17 23 23 C 1.53783 * 87.08123 * 139.98305 * 22 20 18 24 24 C 1.53778 * 113.61781 * 177.00337 * 20 18 17 25 25 H 1.09000 * 113.61523 * 334.56667 * 24 20 18 26 26 C 1.50693 * 113.61578 * 105.47146 * 24 20 18 27 27 N 1.34785 * 120.00567 * 180.02562 * 26 24 20 28 28 O 1.21284 * 120.00173 * 0.02562 * 26 24 20 29 29 H 0.96998 * 120.00361 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 32 32 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 33 33 H 1.00902 * 111.00190 * 56.03702 * 13 12 10 34 34 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 35 35 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 36 36 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 37 37 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 38 38 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 39 39 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 40 40 H 0.96992 * 119.99570 * 0.02562 * 17 16 15 41 41 H 1.08995 * 113.61432 * 254.53282 * 22 20 18 42 42 H 1.09005 * 113.60997 * 25.35287 * 22 20 18 43 43 H 1.09000 * 113.61369 * 89.11183 * 23 22 20 44 44 H 1.08993 * 113.61682 * 219.93701 * 23 22 20 45 45 H 0.97006 * 119.98938 * 359.97438 * 27 26 24 46 46 H 0.96998 * 120.00380 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4983 -7.2708 -0.0015 15 6 2.5232 -8.4068 -0.0014 16 6 1.7939 -9.7517 -0.0019 17 7 2.7753 -10.8395 -0.0024 18 6 2.3602 -12.1216 -0.0024 19 8 1.1741 -12.3750 -0.0025 20 6 3.3696 -13.2405 -0.0023 21 1 4.1156 -13.1377 -0.7903 22 6 3.9727 -13.5259 1.3833 23 6 3.8793 -15.0196 1.0294 24 6 2.7376 -14.6405 0.0713 25 1 1.7533 -14.6511 0.5394 26 6 2.7735 -15.3885 -1.2363 27 7 2.2533 -16.6293 -1.3175 28 8 3.2703 -14.8741 -2.2158 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6176 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8887 33 1 2.8329 -5.9123 0.7814 34 1 0.8724 -7.3455 0.8878 35 1 0.8743 -7.3450 -0.8922 36 1 3.1487 -8.3319 -0.8909 37 1 3.1475 -8.3328 0.8890 38 1 1.1686 -9.8263 0.8878 39 1 1.1694 -9.8260 -0.8922 40 1 3.7238 -10.6368 -0.0019 41 1 4.9957 -13.1672 1.4965 42 1 3.3266 -13.2305 2.2100 43 1 4.7644 -15.4045 0.5230 44 1 3.5619 -15.6467 1.8625 45 1 1.8562 -17.0409 -0.5340 46 1 2.2767 -17.1110 -2.1591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163912300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:27 Heat of formation + Delta-G solvation = -104.757322 kcal Electronic energy + Delta-G solvation = -26046.718008 eV Core-core repulsion = 21971.210406 eV Total energy + Delta-G solvation = -4075.507601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22499 -39.43795 -38.31687 -37.53930 -36.44296 -34.84824 -34.06585 -33.83382 -31.54630 -31.12041 -27.99930 -27.31036 -26.55593 -24.66413 -23.16693 -22.00903 -21.71019 -20.92351 -19.75766 -19.21064 -18.27365 -17.89614 -17.72678 -16.87718 -16.49766 -16.15558 -15.83080 -15.46845 -15.13351 -15.04333 -14.64788 -14.58027 -14.30004 -14.16108 -13.54081 -13.42450 -13.40335 -13.20501 -12.94611 -12.47883 -12.09398 -12.05849 -11.83979 -11.76438 -11.52990 -11.46249 -11.41220 -11.12714 -11.07282 -10.92829 -10.38814 -10.26033 -10.21174 -10.14219 -9.98106 -9.50295 -9.32174 -8.46398 -8.06396 -7.95235 -6.40944 -3.81819 2.18546 2.34757 2.80808 3.15723 3.18702 3.27211 3.33032 3.78176 3.91639 3.96809 4.09326 4.10706 4.24703 4.31986 4.59777 4.73785 4.83152 4.99211 5.06319 5.07633 5.10867 5.17836 5.19574 5.26767 5.28824 5.38567 5.44520 5.51430 5.64250 5.75982 5.80178 5.98034 6.00294 6.05045 6.19583 6.27817 6.32083 6.86060 7.20249 7.22246 7.55905 7.65577 7.82529 7.95034 8.07071 8.62093 9.18570 9.55121 10.06564 10.76798 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.042175 B = 0.001398 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.744709 B =20019.749236 C =20187.918426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.063 3.937 15 C -0.129 4.129 16 C 0.120 3.880 17 N -0.725 5.725 18 C 0.524 3.476 19 O -0.543 6.543 20 C -0.117 4.117 21 H 0.128 0.872 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.117 4.117 25 H 0.128 0.872 26 C 0.529 3.471 27 N -0.854 5.854 28 O -0.542 6.542 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.349 0.651 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.403 0.597 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.402 0.598 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -33.382 4.118 33.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.167 4.167 16 C -0.004 4.004 17 N -0.376 5.376 18 C 0.310 3.690 19 O -0.420 6.420 20 C -0.138 4.138 21 H 0.146 0.854 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.139 4.139 25 H 0.145 0.855 26 C 0.314 3.686 27 N -0.417 5.417 28 O -0.418 6.418 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.168 0.832 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.230 0.770 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.635 -32.860 2.914 33.189 hybrid contribution -0.484 0.560 0.816 1.102 sum 3.151 -32.300 3.730 32.667 Atomic orbital electron populations 1.69610 1.05947 1.28161 1.50584 1.25263 0.95629 0.99721 0.97303 0.85852 0.79202 0.80781 0.78411 1.20381 1.20944 1.19431 1.19711 0.93390 0.82254 1.47625 0.87912 1.41864 1.09214 1.04603 1.64342 1.19813 0.88384 0.84738 0.84473 1.90517 1.13773 1.87083 1.55446 1.21670 0.94338 0.90912 1.01280 1.60037 1.18977 0.99910 1.51285 1.21826 0.95335 0.88791 1.00799 1.21741 0.98969 0.92320 1.03696 1.21341 0.91402 0.85167 1.02525 1.45979 1.10691 1.05646 1.75332 1.20363 0.89547 0.83611 0.75430 1.90693 1.17660 1.83983 1.49662 1.22701 0.98377 0.91875 1.00872 0.85392 1.22832 1.02143 0.95971 0.95194 1.22818 0.97500 0.97270 0.98434 1.22688 1.02033 0.94786 0.94402 0.85451 1.20435 0.76533 0.81485 0.90157 1.43845 1.63442 1.17981 1.16443 1.90752 1.45040 1.67727 1.38270 0.91871 0.77441 0.89540 0.93833 0.83194 0.95273 0.90784 0.90067 0.91242 0.91458 0.91237 0.76292 0.89683 0.89099 0.89196 0.89838 0.76973 0.76849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.42 5.29 -10.97 -0.06 -14.48 16 10 C 0.44 10.50 7.82 -10.99 -0.09 10.42 16 11 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.67 -10.71 6.12 -115.06 -0.70 -11.42 16 14 C 0.06 0.74 5.69 -3.83 -0.02 0.72 16 15 C -0.13 -1.24 5.59 -26.74 -0.15 -1.39 16 16 C 0.12 1.14 5.67 -4.04 -0.02 1.12 16 17 N -0.73 -6.22 5.56 -60.29 -0.33 -6.56 16 18 C 0.52 5.35 7.35 -10.99 -0.08 5.27 16 19 O -0.54 -7.53 15.92 5.55 0.09 -7.45 16 20 C -0.12 -0.85 3.47 -90.96 -0.32 -1.17 16 21 H 0.13 0.99 7.44 -51.93 -0.39 0.60 16 22 C -0.12 -0.55 7.63 -25.91 -0.20 -0.75 16 23 C -0.12 -0.46 7.63 -25.92 -0.20 -0.66 16 24 C -0.12 -0.77 3.45 -90.96 -0.31 -1.08 16 25 H 0.13 0.85 7.47 -51.93 -0.39 0.46 16 26 C 0.53 4.37 7.63 -10.99 -0.08 4.29 16 27 N -0.85 -3.71 8.87 31.22 0.28 -3.44 16 28 O -0.54 -6.87 16.74 5.55 0.09 -6.78 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.35 5.67 8.43 -39.29 -0.33 5.34 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 2.49 8.47 -40.82 -0.35 2.15 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 43 H 0.09 0.33 8.09 -51.93 -0.42 -0.09 16 44 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.40 0.54 8.83 -40.82 -0.36 0.18 16 46 H 0.40 1.46 8.93 -40.82 -0.36 1.10 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -37.32 392.03 -7.76 -45.08 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -7.08 Total: 13.29 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.74 Total: 9.56 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.10 Total: -59.83 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: 0.27 Total: -30.11 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.32 -7.76 -45.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163912300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.679 kcal (2) G-P(sol) polarization free energy of solvation -37.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds