Wall clock time and date at job start Fri Apr 10 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 110.54199 * 2 1 4 4 O 1.21286 * 119.99874 * 118.83554 * 3 2 1 5 5 N 1.34775 * 120.00059 * 298.84219 * 3 2 1 6 6 C 1.46495 * 119.99913 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46938 * 180.02562 * 6 5 3 8 8 C 1.53003 * 109.47057 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47060 * 179.97438 * 8 7 6 10 10 C 1.46906 * 110.99785 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46597 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00319 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99632 * 180.02562 * 11 10 9 14 14 C 1.37093 * 119.99717 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00539 * 0.02562 * 14 13 11 16 16 C 1.38949 * 119.99997 * 180.02562 * 14 13 11 17 17 N 1.31420 * 119.99757 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00285 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47320 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47048 * 120.00067 * 18 16 14 21 21 H 1.48500 * 109.47134 * 239.99838 * 18 16 14 22 22 C 1.54784 * 110.42597 * 122.73841 * 2 1 3 23 23 C 1.54480 * 101.69261 * 143.70844 * 22 2 1 24 24 N 1.46764 * 105.47241 * 334.38904 * 23 22 2 25 25 C 1.34420 * 111.30051 * 17.01779 * 24 23 22 26 26 O 1.21283 * 124.93917 * 179.55324 * 25 24 23 27 27 H 1.08996 * 109.47222 * 181.15682 * 1 2 3 28 28 H 1.09002 * 109.47014 * 301.15986 * 1 2 3 29 29 H 1.09000 * 109.46877 * 61.15702 * 1 2 3 30 30 H 0.97003 * 119.99965 * 359.97438 * 5 3 2 31 31 H 1.09005 * 109.47425 * 299.99409 * 6 5 3 32 32 H 1.08998 * 109.47628 * 60.00149 * 6 5 3 33 33 H 1.08997 * 109.47024 * 299.99478 * 7 6 5 34 34 H 1.09002 * 109.47590 * 60.00172 * 7 6 5 35 35 H 1.08997 * 109.47324 * 299.99774 * 8 7 6 36 36 H 1.08992 * 109.47145 * 60.00023 * 8 7 6 37 37 H 1.00895 * 111.00345 * 303.95363 * 9 8 7 38 38 H 1.08996 * 109.47228 * 300.00275 * 10 9 8 39 39 H 1.09002 * 109.46550 * 60.00687 * 10 9 8 40 40 H 0.97002 * 119.99622 * 0.02562 * 13 11 10 41 41 H 0.96996 * 120.00201 * 180.02562 * 17 16 14 42 42 H 1.08997 * 111.17051 * 25.53790 * 22 2 1 43 43 H 1.09008 * 110.86851 * 261.74232 * 22 2 1 44 44 H 1.09003 * 110.24569 * 215.39240 * 23 22 2 45 45 H 1.09004 * 110.32163 * 93.43121 * 23 22 2 46 46 H 0.96999 * 124.34793 * 196.99329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4112 0.0000 4 8 2.7460 1.8013 0.9201 5 7 1.7680 2.2398 -1.0224 6 6 2.2816 3.6118 -1.0221 7 6 1.8085 4.3337 -2.2854 8 6 2.3444 5.7668 -2.2848 9 7 1.8907 6.4597 -3.4981 10 6 2.3868 7.8421 -3.5315 11 6 1.9027 8.5192 -4.7878 12 8 1.2120 7.9104 -5.5773 13 7 2.2373 9.8014 -5.0340 14 6 1.7965 10.4175 -6.1766 15 1 1.1808 9.8757 -6.8792 16 6 2.1419 11.7392 -6.4307 17 7 2.8916 12.3984 -5.5760 18 14 1.5419 12.5785 -7.9879 19 1 0.7208 11.6267 -8.7784 20 1 0.7185 13.7606 -7.6272 21 1 2.7087 13.0159 -8.7956 22 6 2.0702 -0.7844 1.2201 23 6 3.3221 -1.4661 0.6247 24 7 3.0596 -1.5781 -0.8149 25 6 2.0594 -0.7638 -1.1937 26 8 1.6453 -0.6536 -2.3283 27 1 -0.3633 -1.0274 0.0207 28 1 -0.3633 0.5318 0.8794 29 1 -0.3633 0.4958 -0.9002 30 1 1.2186 1.9277 -1.7584 31 1 1.9107 4.1384 -0.1427 32 1 3.3712 3.5919 -1.0010 33 1 2.1790 3.8073 -3.1650 34 1 0.7189 4.3537 -2.3061 35 1 1.9735 6.2930 -1.4053 36 1 3.4339 5.7473 -2.2640 37 1 2.1673 5.9558 -4.3272 38 1 2.0156 8.3825 -2.6608 39 1 3.4767 7.8372 -3.5187 40 1 2.7901 10.2881 -4.4027 41 1 3.1324 13.3211 -5.7532 42 1 1.3481 -1.5256 1.5626 43 1 2.3428 -0.1057 2.0284 44 1 3.4565 -2.4557 1.0617 45 1 4.2064 -0.8535 0.8004 46 1 3.5456 -2.1642 -1.4159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166552411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:48 Heat of formation + Delta-G solvation = -115.518923 kcal Electronic energy + Delta-G solvation = -26731.670758 eV Core-core repulsion = 22655.696498 eV Total energy + Delta-G solvation = -4075.974259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67547 -39.30452 -38.30735 -37.02185 -36.42080 -34.91934 -33.89561 -33.68582 -31.44058 -31.07570 -29.28130 -27.23906 -26.03681 -24.93291 -23.55302 -22.51520 -21.94677 -21.71921 -19.78366 -19.18079 -18.05635 -17.86685 -17.76437 -16.56511 -16.27431 -15.93937 -15.70518 -15.58498 -15.14242 -14.67051 -14.50248 -14.41184 -14.21905 -14.17573 -13.99693 -13.49592 -13.41301 -13.19325 -12.98401 -12.80405 -12.73405 -12.07292 -11.99895 -11.83650 -11.78636 -11.67394 -11.46022 -11.41524 -11.08889 -10.93903 -10.49242 -10.33288 -10.21441 -10.12587 -9.66873 -9.51017 -9.41084 -8.45994 -8.06083 -7.94805 -6.40702 -3.81475 1.82262 2.20472 2.70518 2.89073 3.17374 3.27853 3.35381 3.62346 3.82111 3.92010 4.07547 4.13202 4.31092 4.36301 4.45648 4.73690 4.81988 4.94053 4.97434 5.05096 5.11619 5.14587 5.18634 5.26800 5.32354 5.41773 5.46339 5.48681 5.56151 5.61644 5.80017 5.96007 5.99287 6.02947 6.12707 6.16663 6.28102 6.40448 7.09190 7.20703 7.56590 7.64534 7.65758 7.76929 8.07749 8.62462 9.19089 9.55525 10.06969 10.77141 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.034378 B = 0.001588 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.282581 B =17625.629153 C =17947.233290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.535 3.465 4 O -0.531 6.531 5 N -0.718 5.718 6 C 0.120 3.880 7 C -0.131 4.131 8 C 0.064 3.936 9 N -0.670 5.670 10 C 0.051 3.949 11 C 0.441 3.559 12 O -0.583 6.583 13 N -0.564 5.564 14 C -0.299 4.299 15 H 0.104 0.896 16 C 0.021 3.979 17 N -0.902 5.902 18 Si 0.930 3.070 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.118 4.118 23 C 0.098 3.902 24 N -0.727 5.727 25 C 0.531 3.469 26 O -0.517 6.517 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.408 0.592 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.349 0.651 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 -27.753 17.295 32.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 C 0.319 3.681 4 O -0.408 6.408 5 N -0.370 5.370 6 C -0.003 4.003 7 C -0.169 4.169 8 C -0.067 4.067 9 N -0.302 5.302 10 C -0.082 4.082 11 C 0.226 3.774 12 O -0.467 6.467 13 N -0.201 5.201 14 C -0.428 4.428 15 H 0.122 0.878 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.757 3.243 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.156 4.156 23 C -0.026 4.026 24 N -0.383 5.383 25 C 0.314 3.686 26 O -0.392 6.392 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.244 0.756 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.169 0.831 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.417 -27.342 17.135 32.270 hybrid contribution 1.112 0.276 -1.104 1.591 sum 1.529 -27.066 16.032 31.494 Atomic orbital electron populations 1.21694 0.89303 1.03833 1.03900 1.21670 0.99822 0.94050 0.97213 1.19652 0.80209 0.85925 0.82355 1.90709 1.38077 1.76538 1.35445 1.46015 1.53775 1.13279 1.23924 1.21389 0.99233 0.80698 0.99025 1.21756 1.02824 0.95502 0.96800 1.21817 0.97040 0.93202 0.94608 1.60041 1.63726 1.02007 1.04455 1.21674 0.97420 0.90208 0.98902 1.19818 0.85846 0.83334 0.88391 1.90521 1.41839 1.64991 1.49374 1.41874 1.46431 1.10078 1.21716 1.19763 1.29540 0.94811 0.98731 0.87849 1.25271 0.96915 0.96608 0.99220 1.69624 1.36891 1.11554 1.36269 0.85791 0.78419 0.79046 0.81031 1.19217 1.20744 1.20785 1.22750 0.96671 0.99338 0.96804 1.22167 0.98882 1.01886 0.79712 1.46160 1.36801 1.44179 1.11136 1.20333 0.79716 0.79708 0.88804 1.90795 1.61137 1.66117 1.21110 0.90846 0.90623 0.90781 0.75603 0.90872 0.91340 0.91136 0.89960 0.90733 0.95275 0.83126 0.89522 0.93829 0.77446 0.91936 0.88962 0.87126 0.89651 0.90368 0.74655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 8.34 37.16 0.31 -0.45 16 2 C -0.12 -0.88 0.74 -155.59 -0.12 -1.00 16 3 C 0.53 5.28 6.55 -10.99 -0.07 5.21 16 4 O -0.53 -6.58 15.47 5.55 0.09 -6.49 16 5 N -0.72 -6.76 5.42 -60.29 -0.33 -7.09 16 6 C 0.12 1.15 5.67 -4.04 -0.02 1.13 16 7 C -0.13 -1.32 5.59 -26.73 -0.15 -1.47 16 8 C 0.06 0.76 5.69 -3.82 -0.02 0.74 16 9 N -0.67 -10.88 6.13 -115.05 -0.70 -11.58 16 10 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 11 C 0.44 10.57 7.82 -10.98 -0.09 10.49 16 12 O -0.58 -16.09 15.78 5.55 0.09 -16.00 16 13 N -0.56 -14.50 5.29 -10.96 -0.06 -14.55 16 14 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16 15 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 16 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 17 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 18 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.12 -0.58 6.05 -25.01 -0.15 -0.73 16 23 C 0.10 0.41 7.78 -3.12 -0.02 0.39 16 24 N -0.73 -4.40 6.24 -59.20 -0.37 -4.77 16 25 C 0.53 4.68 7.07 -10.86 -0.08 4.60 16 26 O -0.52 -6.24 17.69 5.55 0.10 -6.14 16 27 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.48 7.77 -51.93 -0.40 0.08 16 30 H 0.41 3.60 7.86 -40.82 -0.32 3.28 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.35 5.85 8.43 -39.29 -0.33 5.52 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.09 0.26 7.91 -51.93 -0.41 -0.15 16 43 H 0.11 0.64 6.93 -51.92 -0.36 0.28 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.41 1.89 8.96 -40.82 -0.37 1.52 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -35.41 387.50 -7.43 -42.84 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -7.10 Total: 14.08 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -0.68 Total: 11.68 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.73 Total: -62.01 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: 0.27 Total: -28.63 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.41 -7.43 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166552411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.681 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds