Wall clock time and date at job start Fri Apr 10 2020 18:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48503 * 109.47283 * 270.00067 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99791 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47482 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.47212 * 180.02562 * 15 14 13 17 17 C 1.34780 * 119.99795 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99953 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 H 1.09001 * 110.53329 * 55.69445 * 20 19 17 22 22 N 1.47310 * 110.59868 * 292.87326 * 20 19 17 23 23 C 1.34530 * 106.61679 * 241.47060 * 22 20 19 24 24 O 1.21540 * 123.77162 * 179.97438 * 23 22 20 25 25 N 1.33785 * 112.45934 * 0.02562 * 23 22 20 26 26 C 1.35120 * 111.68704 * 359.90468 * 25 23 22 27 27 O 1.21234 * 127.33820 * 180.09561 * 26 25 23 28 28 H 0.97005 * 119.99630 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 31 31 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 32 32 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 33 33 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 34 34 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 35 35 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 38 38 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 39 39 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 40 40 H 1.09002 * 109.47153 * 300.00216 * 15 14 13 41 41 H 1.09001 * 109.47289 * 60.00300 * 15 14 13 42 42 H 0.96995 * 120.00194 * 359.97438 * 16 15 14 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.46927 * 59.99526 * 19 17 16 45 45 H 0.96998 * 126.69619 * 61.50565 * 22 20 19 46 46 H 0.97002 * 124.17886 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1448 0.0005 13 6 0.8344 -7.3076 0.0005 14 6 1.5992 -8.6327 0.0005 15 6 0.6050 -9.7955 0.0012 16 7 1.3375 -11.0643 0.0018 17 6 0.6635 -12.2315 0.0019 18 8 -0.5493 -12.2314 0.0020 19 6 1.4170 -13.5367 0.0031 20 6 0.4228 -14.6995 0.0036 21 1 -0.2627 -14.6169 -0.8398 22 7 -0.3218 -14.7442 1.2739 23 6 -0.0338 -15.9266 1.8473 24 8 -0.4862 -16.2872 2.9162 25 7 0.8073 -16.6607 1.1101 26 6 1.1550 -16.0263 -0.0311 27 8 1.8964 -16.4310 -0.9008 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6846 -3.7145 0.8905 31 1 2.6846 -3.7146 -0.8894 32 1 0.4367 -4.7621 -0.8886 33 1 0.4373 -4.7618 0.8913 34 1 2.4547 -6.2024 -0.8899 35 1 2.4558 -6.2026 0.8901 36 1 0.2080 -7.2501 0.8907 37 1 0.2074 -7.2497 -0.8892 38 1 2.2259 -8.6904 -0.8894 39 1 2.2259 -8.6904 0.8905 40 1 -0.0213 -9.7376 0.8914 41 1 -0.0220 -9.7381 -0.8886 42 1 2.3074 -11.0644 0.0014 43 1 2.0443 -13.5949 -0.8864 44 1 2.0431 -13.5939 0.8936 45 1 -0.9063 -14.0557 1.6277 46 1 1.1270 -17.5411 1.3626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178719704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:26 Heat of formation + Delta-G solvation = -98.942470 kcal Electronic energy + Delta-G solvation = -25726.942641 eV Core-core repulsion = 21651.687190 eV Total energy + Delta-G solvation = -4075.255451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.97037 -40.24667 -39.23084 -37.11237 -36.70658 -35.54730 -34.61604 -34.06631 -32.22956 -31.44259 -29.96533 -27.39153 -26.01586 -24.06288 -23.31567 -22.45263 -22.08535 -21.46161 -20.70448 -20.65947 -18.99440 -18.00680 -17.36397 -17.19385 -16.99349 -16.59868 -16.45139 -16.17455 -15.99357 -15.61130 -14.93770 -14.77566 -14.66485 -14.34647 -14.11466 -13.71254 -13.49825 -13.42728 -13.13018 -12.77728 -12.60424 -12.42952 -11.80423 -11.69003 -11.44159 -11.24035 -11.01309 -10.97288 -10.96296 -10.77471 -10.76008 -10.55964 -10.36258 -10.30012 -10.12180 -9.97880 -9.65612 -9.61512 -8.85739 -6.90222 -5.75328 -3.03818 0.89027 1.80367 1.99311 2.36052 2.41679 2.67954 3.30706 3.43959 3.48695 3.50761 3.72258 4.10630 4.19751 4.44613 4.61135 4.62343 4.65121 4.71248 4.86166 4.87413 5.14985 5.27450 5.31631 5.38305 5.50314 5.59446 5.61700 5.63513 5.85532 5.89593 5.93182 6.07984 6.21101 6.29293 6.30406 6.31493 6.38931 6.45522 6.70730 6.87389 6.89297 6.93348 7.55309 7.58690 7.70671 8.44039 9.54720 10.14195 10.48614 11.47772 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.042050 B = 0.001247 C = 0.001231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.707564 B =22443.013913 C =22738.680630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.116 3.884 16 N -0.725 5.725 17 C 0.516 3.484 18 O -0.539 6.539 19 C -0.146 4.146 20 C 0.109 3.891 21 H 0.139 0.861 22 N -0.711 5.711 23 C 0.701 3.299 24 O -0.542 6.542 25 N -0.680 5.680 26 C 0.531 3.469 27 O -0.461 6.461 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.403 0.597 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.448 0.552 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 -35.636 -0.384 35.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.169 4.169 15 C -0.007 4.007 16 N -0.376 5.376 17 C 0.302 3.698 18 O -0.416 6.416 19 C -0.187 4.187 20 C -0.001 4.001 21 H 0.157 0.843 22 N -0.377 5.377 23 C 0.400 3.600 24 O -0.415 6.415 25 N -0.352 5.352 26 C 0.316 3.684 27 O -0.330 6.330 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.237 0.763 43 H 0.141 0.859 44 H 0.126 0.874 45 H 0.294 0.706 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.164 -35.824 -0.314 35.965 hybrid contribution 0.567 0.916 0.204 1.096 sum 3.731 -34.908 -0.111 35.107 Atomic orbital electron populations 1.69667 1.05129 1.25610 1.57915 1.24750 0.95540 0.97712 1.03117 0.86178 0.78632 0.83807 0.77516 1.21720 1.21743 1.20776 1.19259 0.91050 0.84294 1.42522 0.91220 1.42394 1.05905 1.00154 1.89475 1.20657 0.93650 0.85727 0.97525 1.21729 0.98896 0.93835 1.02010 1.21499 0.97855 0.93879 1.01910 1.21516 0.98443 0.92814 1.02670 1.21835 0.98233 0.94029 1.02837 1.21514 0.94969 0.81372 1.02836 1.46027 1.10674 1.05976 1.74952 1.20257 0.88126 0.85212 0.76207 1.90742 1.13651 1.87610 1.49583 1.21902 0.98623 0.91184 1.06966 1.21757 0.94644 0.92828 0.90877 0.84334 1.45658 1.50906 1.19405 1.21778 1.15916 0.79176 0.81471 0.83421 1.91086 1.56330 1.73843 1.20290 1.44401 1.46082 1.22478 1.22231 1.20786 0.80111 0.86650 0.80865 1.90882 1.33557 1.71424 1.37127 0.93537 0.78335 0.96607 0.96600 0.92083 0.92078 0.92085 0.92095 0.91609 0.91587 0.91190 0.91237 0.91115 0.91065 0.76252 0.85872 0.87405 0.70558 0.72358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.74 -19.14 5.60 -59.91 -0.34 -19.47 16 10 C 0.15 3.08 6.26 -4.04 -0.03 3.06 16 11 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 12 C -0.11 -1.28 5.21 -26.73 -0.14 -1.42 16 13 C -0.12 -1.03 5.21 -26.74 -0.14 -1.17 16 14 C -0.13 -0.81 5.33 -26.74 -0.14 -0.96 16 15 C 0.12 0.74 5.67 -4.04 -0.02 0.71 16 16 N -0.73 -3.24 5.56 -60.29 -0.33 -3.57 16 17 C 0.52 2.75 7.73 -10.98 -0.08 2.66 16 18 O -0.54 -4.71 14.99 5.56 0.08 -4.62 16 19 C -0.15 -0.35 5.46 -27.88 -0.15 -0.50 16 20 C 0.11 0.40 3.16 -68.21 -0.22 0.18 16 21 H 0.14 0.46 8.01 -51.93 -0.42 0.04 16 22 N -0.71 -3.61 5.88 -59.19 -0.35 -3.96 16 23 C 0.70 4.71 9.00 -88.02 -0.79 3.92 16 24 O -0.54 -5.86 18.04 5.33 0.10 -5.77 16 25 N -0.68 -2.95 5.72 -15.71 -0.09 -3.04 16 26 C 0.53 2.43 8.17 -10.40 -0.08 2.35 16 27 O -0.46 -3.31 18.02 5.60 0.10 -3.21 16 28 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.40 0.78 8.47 -40.82 -0.35 0.44 16 43 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.45 2.46 8.18 -40.82 -0.33 2.12 16 46 H 0.43 1.15 8.96 -40.82 -0.37 0.78 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -36.83 391.19 -8.66 -45.49 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.24 Total: 3.48 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.19 Total: -0.85 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.38 Total: -57.95 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.28 Total: -13.60 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.83 -8.66 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178719704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.454 kcal (2) G-P(sol) polarization free energy of solvation -36.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds