Wall clock time and date at job start Fri Apr 10 2020 18:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47097 * 269.99866 * 3 2 1 5 5 H 1.48500 * 109.46807 * 29.99857 * 3 2 1 6 6 H 1.48502 * 109.47155 * 149.99587 * 3 2 1 7 7 C 1.38811 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99840 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00607 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47847 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47629 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47629 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47629 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47255 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.47022 * 179.97438 * 15 14 13 17 17 C 1.34782 * 119.99952 * 179.97438 * 16 15 14 18 18 O 1.21280 * 119.99761 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99703 * 180.02562 * 17 16 15 20 20 N 1.46504 * 109.46603 * 180.02562 * 19 17 16 21 21 C 1.47308 * 126.69390 * 270.29480 * 20 19 17 22 22 C 1.51579 * 103.59774 * 180.02562 * 21 20 19 23 23 O 1.21233 * 127.16311 * 179.97438 * 22 21 20 24 24 N 1.34773 * 105.68013 * 359.65777 * 22 21 20 25 25 C 1.33795 * 111.64536 * 0.22635 * 24 22 21 26 26 O 1.21531 * 123.76756 * 179.97438 * 25 24 22 27 27 H 0.97001 * 119.99916 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99974 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.46728 * 59.99799 * 10 9 7 30 30 H 1.08998 * 109.47104 * 300.00614 * 10 9 7 31 31 H 1.08999 * 109.47249 * 59.99961 * 11 10 9 32 32 H 1.08998 * 109.47142 * 300.00434 * 11 10 9 33 33 H 1.08999 * 109.46907 * 59.99666 * 12 11 10 34 34 H 1.08998 * 109.47143 * 300.00348 * 12 11 10 35 35 H 1.09004 * 109.47164 * 59.99394 * 13 12 11 36 36 H 1.08998 * 109.47142 * 300.00348 * 13 12 11 37 37 H 1.08999 * 109.46907 * 59.99666 * 14 13 12 38 38 H 1.09003 * 109.47142 * 299.99878 * 14 13 12 39 39 H 1.08999 * 109.47438 * 59.99989 * 15 14 13 40 40 H 1.08993 * 109.47410 * 299.99748 * 15 14 13 41 41 H 0.96996 * 120.00258 * 0.02562 * 16 15 14 42 42 H 1.09001 * 109.47164 * 60.00785 * 19 17 16 43 43 H 1.08993 * 109.47070 * 300.00472 * 19 17 16 44 44 H 1.08999 * 110.69646 * 61.50423 * 21 20 19 45 45 H 1.09002 * 110.50179 * 298.56348 * 21 20 19 46 46 H 0.97003 * 124.17604 * 180.26125 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1913 0.0024 12 6 6.3814 -3.5163 0.0017 13 6 7.8856 -3.2368 0.0024 14 6 8.6507 -4.5617 0.0024 15 6 10.1548 -4.2821 0.0036 16 7 10.8874 -5.5509 0.0043 17 6 12.2352 -5.5508 0.0049 18 8 12.8415 -4.5005 0.0054 19 6 12.9886 -6.8560 0.0049 20 7 14.4290 -6.5882 0.0063 21 6 15.2943 -6.4208 -1.1740 22 6 16.6653 -6.1699 -0.5782 23 8 17.7002 -5.9748 -1.1786 24 7 16.4930 -6.2017 0.7581 25 6 15.2179 -6.4403 1.0858 26 8 14.8174 -6.5154 2.2308 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 0.0014 29 1 3.8492 -3.0422 -0.8891 30 1 3.8485 -3.0426 0.8907 31 1 5.8791 -1.6202 0.8928 32 1 5.8804 -1.6193 -0.8871 33 1 6.1187 -4.0870 -0.8889 34 1 6.1175 -4.0887 0.8910 35 1 8.1487 -2.6657 0.8928 36 1 8.1492 -2.6646 -0.8871 37 1 8.3876 -5.1331 -0.8878 38 1 8.3870 -5.1335 0.8921 39 1 10.4175 -3.7109 0.8941 40 1 10.4189 -3.7102 -0.8858 41 1 10.4024 -6.3909 0.0035 42 1 12.7258 -7.4273 -0.8854 43 1 12.7248 -7.4278 0.8946 44 1 14.9733 -5.5657 -1.7689 45 1 15.2976 -7.3290 -1.7769 46 1 17.2054 -6.0677 1.4027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179838762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:44 Heat of formation + Delta-G solvation = -79.978813 kcal Electronic energy + Delta-G solvation = -25835.245357 eV Core-core repulsion = 21760.812232 eV Total energy + Delta-G solvation = -4074.433125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.83467 -40.18427 -39.13776 -37.07201 -36.70939 -35.65378 -35.04467 -34.13151 -32.08216 -30.77198 -29.85027 -27.89997 -26.81770 -24.18539 -22.96970 -22.45052 -22.02026 -21.31311 -20.87710 -20.58681 -18.84417 -18.22931 -17.48827 -17.35047 -17.03959 -16.63049 -16.50861 -16.20640 -15.55943 -15.30894 -14.84760 -14.76365 -14.59357 -14.48104 -14.36733 -13.93557 -13.67850 -13.30864 -13.28193 -12.73495 -12.72191 -12.46150 -11.85801 -11.66761 -11.63904 -11.50577 -11.04933 -10.96499 -10.92304 -10.89864 -10.81434 -10.79225 -10.39796 -10.34078 -10.09210 -9.63336 -9.57858 -9.57343 -8.87831 -7.21178 -5.75843 -3.10960 1.00286 1.45656 2.04543 2.31197 2.38687 2.77388 3.38371 3.40885 3.41397 3.45962 3.99044 4.09565 4.33975 4.42808 4.51267 4.51592 4.60388 4.63148 4.81324 4.94715 5.10522 5.20189 5.26675 5.40778 5.45432 5.49879 5.55402 5.56009 5.60148 5.74904 5.82600 5.93273 5.98784 6.10076 6.19057 6.21788 6.35367 6.35834 6.73022 6.77931 6.82084 6.92090 7.47610 7.65381 8.01149 8.43606 9.23200 9.95830 10.16118 11.42722 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.001322 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.528838 B =21170.793609 C =21428.247925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.131 4.131 15 C 0.118 3.882 16 N -0.727 5.727 17 C 0.489 3.511 18 O -0.529 6.529 19 C 0.134 3.866 20 N -0.610 5.610 21 C 0.064 3.936 22 C 0.530 3.470 23 O -0.470 6.470 24 N -0.678 5.678 25 C 0.708 3.292 26 O -0.538 6.538 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.403 0.597 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.153 -20.103 -2.694 39.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.169 4.169 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.169 4.169 15 C -0.006 4.006 16 N -0.379 5.379 17 C 0.273 3.727 18 O -0.404 6.404 19 C 0.008 3.992 20 N -0.348 5.348 21 C -0.062 4.062 22 C 0.316 3.684 23 O -0.339 6.339 24 N -0.348 5.348 25 C 0.409 3.591 26 O -0.410 6.410 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.237 0.763 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 34.500 -19.392 -2.477 39.654 hybrid contribution 0.502 1.019 0.293 1.173 sum 35.003 -18.373 -2.184 39.592 Atomic orbital electron populations 1.69708 1.05106 1.25802 1.57743 1.24682 0.95261 0.97238 1.02092 0.86521 0.79207 0.84890 0.77770 1.21084 1.21701 1.20346 1.19091 0.80760 0.94754 1.42859 0.89265 1.42746 1.04070 1.02418 1.91180 1.20633 0.88902 0.89171 0.98393 1.21781 0.96276 0.96965 1.01863 1.21486 0.93450 0.98012 1.02184 1.21519 0.95315 0.96069 1.02595 1.21826 0.92746 0.99368 1.02915 1.21472 0.91223 0.85191 1.02675 1.45998 1.06041 1.10388 1.75510 1.21163 0.82799 0.91996 0.76731 1.90754 1.68084 1.33174 1.48422 1.21155 0.76176 0.95069 1.06762 1.46916 1.07327 1.74719 1.05879 1.22567 0.86970 1.06376 0.90272 1.20767 0.90755 0.74545 0.82370 1.90881 1.31485 1.45376 1.66204 1.44312 1.11635 1.68165 1.10725 1.15740 0.80758 0.77427 0.85158 1.91046 1.75985 1.55256 1.18745 0.93086 0.80720 0.95709 0.95763 0.92140 0.92146 0.91878 0.91867 0.91658 0.91664 0.91133 0.91114 0.91297 0.91277 0.76306 0.86001 0.85882 0.85547 0.85533 0.72377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.74 13.97 55.49 0.78 -28.97 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.41 27.74 -169.99 -4.71 17.70 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 N -0.76 -18.53 5.41 -59.92 -0.32 -18.86 16 10 C 0.16 3.02 6.26 -4.05 -0.03 2.99 16 11 C -0.13 -1.91 5.33 -26.74 -0.14 -2.06 16 12 C -0.11 -1.21 5.21 -26.74 -0.14 -1.35 16 13 C -0.12 -1.00 5.21 -26.74 -0.14 -1.14 16 14 C -0.13 -0.80 5.33 -26.74 -0.14 -0.94 16 15 C 0.12 0.81 5.67 -4.04 -0.02 0.78 16 16 N -0.73 -3.59 5.56 -60.29 -0.33 -3.92 16 17 C 0.49 3.29 7.90 -10.98 -0.09 3.20 16 18 O -0.53 -6.11 16.43 5.56 0.09 -6.02 16 19 C 0.13 0.39 6.63 -5.19 -0.03 0.36 16 20 N -0.61 -3.03 2.51 -181.40 -0.45 -3.48 16 21 C 0.06 0.18 7.66 -4.32 -0.03 0.15 16 22 C 0.53 2.93 8.81 -10.55 -0.09 2.84 16 23 O -0.47 -4.04 18.02 5.60 0.10 -3.94 16 24 N -0.68 -3.82 5.70 -15.79 -0.09 -3.91 16 25 C 0.71 5.47 8.68 -88.02 -0.76 4.70 16 26 O -0.54 -6.17 17.71 5.34 0.09 -6.07 16 27 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 28 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.40 0.68 8.47 -40.82 -0.35 0.34 16 42 H 0.12 -0.15 8.14 -51.93 -0.42 -0.57 16 43 H 0.12 0.27 8.03 -51.93 -0.42 -0.15 16 44 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.13 -0.05 8.14 -51.93 -0.42 -0.47 16 46 H 0.43 1.76 8.96 -40.82 -0.37 1.39 16 LS Contribution 391.94 15.07 5.91 5.91 Total: -1.00 -40.52 391.94 -8.11 -48.64 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.29 Total: 0.65 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.88 Total: 2.27 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.43 Total: -59.14 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.29 Total: -16.03 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.52 -8.11 -48.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179838762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.343 kcal (2) G-P(sol) polarization free energy of solvation -40.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds