Wall clock time and date at job start Fri Apr 10 2020 18:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47097 * 269.99866 * 3 2 1 5 5 H 1.48500 * 109.46807 * 29.99857 * 3 2 1 6 6 H 1.48502 * 109.47155 * 149.99587 * 3 2 1 7 7 C 1.38811 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99840 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00607 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47847 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47629 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47629 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47629 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47255 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.47022 * 179.97438 * 15 14 13 17 17 C 1.34782 * 119.99952 * 179.97438 * 16 15 14 18 18 O 1.21280 * 119.99761 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99703 * 180.02562 * 17 16 15 20 20 N 1.46504 * 109.46603 * 180.02562 * 19 17 16 21 21 C 1.47308 * 126.69390 * 270.29480 * 20 19 17 22 22 C 1.51579 * 103.59774 * 180.02562 * 21 20 19 23 23 O 1.21233 * 127.16311 * 179.97438 * 22 21 20 24 24 N 1.34773 * 105.68013 * 359.65777 * 22 21 20 25 25 C 1.33795 * 111.64536 * 0.22635 * 24 22 21 26 26 O 1.21531 * 123.76756 * 179.97438 * 25 24 22 27 27 H 0.97001 * 119.99916 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99974 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.46728 * 59.99799 * 10 9 7 30 30 H 1.08998 * 109.47104 * 300.00614 * 10 9 7 31 31 H 1.08999 * 109.47249 * 59.99961 * 11 10 9 32 32 H 1.08998 * 109.47142 * 300.00434 * 11 10 9 33 33 H 1.08999 * 109.46907 * 59.99666 * 12 11 10 34 34 H 1.08998 * 109.47143 * 300.00348 * 12 11 10 35 35 H 1.09004 * 109.47164 * 59.99394 * 13 12 11 36 36 H 1.08998 * 109.47142 * 300.00348 * 13 12 11 37 37 H 1.08999 * 109.46907 * 59.99666 * 14 13 12 38 38 H 1.09003 * 109.47142 * 299.99878 * 14 13 12 39 39 H 1.08999 * 109.47438 * 59.99989 * 15 14 13 40 40 H 1.08993 * 109.47410 * 299.99748 * 15 14 13 41 41 H 0.96996 * 120.00258 * 0.02562 * 16 15 14 42 42 H 1.09001 * 109.47164 * 60.00785 * 19 17 16 43 43 H 1.08993 * 109.47070 * 300.00472 * 19 17 16 44 44 H 1.08999 * 110.69646 * 61.50423 * 21 20 19 45 45 H 1.09002 * 110.50179 * 298.56348 * 21 20 19 46 46 H 0.97003 * 124.17604 * 180.26125 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1913 0.0024 12 6 6.3814 -3.5163 0.0017 13 6 7.8856 -3.2368 0.0024 14 6 8.6507 -4.5617 0.0024 15 6 10.1548 -4.2821 0.0036 16 7 10.8874 -5.5509 0.0043 17 6 12.2352 -5.5508 0.0049 18 8 12.8415 -4.5005 0.0054 19 6 12.9886 -6.8560 0.0049 20 7 14.4290 -6.5882 0.0063 21 6 15.2943 -6.4208 -1.1740 22 6 16.6653 -6.1699 -0.5782 23 8 17.7002 -5.9748 -1.1786 24 7 16.4930 -6.2017 0.7581 25 6 15.2179 -6.4403 1.0858 26 8 14.8174 -6.5154 2.2308 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 0.0014 29 1 3.8492 -3.0422 -0.8891 30 1 3.8485 -3.0426 0.8907 31 1 5.8791 -1.6202 0.8928 32 1 5.8804 -1.6193 -0.8871 33 1 6.1187 -4.0870 -0.8889 34 1 6.1175 -4.0887 0.8910 35 1 8.1487 -2.6657 0.8928 36 1 8.1492 -2.6646 -0.8871 37 1 8.3876 -5.1331 -0.8878 38 1 8.3870 -5.1335 0.8921 39 1 10.4175 -3.7109 0.8941 40 1 10.4189 -3.7102 -0.8858 41 1 10.4024 -6.3909 0.0035 42 1 12.7258 -7.4273 -0.8854 43 1 12.7248 -7.4278 0.8946 44 1 14.9733 -5.5657 -1.7689 45 1 15.2976 -7.3290 -1.7769 46 1 17.2054 -6.0677 1.4027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179838762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:42 Heat of formation + Delta-G solvation = -113.047196 kcal Electronic energy + Delta-G solvation = -25836.679310 eV Core-core repulsion = 21760.812232 eV Total energy + Delta-G solvation = -4075.867077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.28931 -40.70262 -39.69856 -37.98485 -37.34117 -36.81916 -35.50355 -35.30799 -33.68691 -32.03148 -30.44951 -28.65080 -27.63585 -25.50875 -23.70132 -23.32912 -22.72870 -22.24154 -21.99842 -21.13037 -19.61543 -19.31438 -18.63530 -17.80835 -17.51029 -17.13630 -17.07424 -16.81148 -16.61159 -16.26587 -15.88068 -15.66749 -15.43074 -15.38095 -15.06676 -14.89577 -14.83781 -14.17831 -14.14646 -14.01175 -13.46538 -13.32417 -13.20375 -12.97475 -12.64406 -12.45670 -12.19377 -12.07710 -11.88865 -11.85278 -11.79108 -11.56472 -11.51828 -11.46924 -11.32444 -11.25772 -10.97490 -10.09897 -10.05265 -9.31060 -8.04748 -5.38464 0.54225 1.09195 1.36992 1.40619 1.48265 1.58558 1.85663 1.98325 2.36401 2.47274 3.04066 3.26648 3.57374 3.76058 3.77229 3.92502 4.04154 4.23490 4.25842 4.26995 4.32107 4.33512 4.40090 4.60061 4.63436 4.67451 4.79401 4.85663 4.99042 5.00648 5.01738 5.06570 5.16315 5.19244 5.29663 5.35556 5.46359 5.54292 5.57148 5.73892 5.90197 6.19930 6.29846 6.55397 6.97554 7.06544 7.24805 7.83651 8.02601 9.16827 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.001322 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.528838 B =21170.793609 C =21428.247925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.252 1.252 7 C -0.241 4.241 8 H 0.055 0.945 9 N -0.763 5.763 10 C 0.150 3.850 11 C -0.121 4.121 12 C -0.106 4.106 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.121 3.879 16 N -0.713 5.713 17 C 0.484 3.516 18 O -0.585 6.585 19 C 0.134 3.866 20 N -0.605 5.605 21 C 0.071 3.929 22 C 0.530 3.470 23 O -0.505 6.505 24 N -0.676 5.676 25 C 0.702 3.298 26 O -0.583 6.583 27 H 0.259 0.741 28 H 0.366 0.634 29 H 0.024 0.976 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.421 0.579 42 H 0.176 0.824 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.172 0.828 46 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.740 -21.251 -3.797 41.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.177 1.177 7 C -0.372 4.372 8 H 0.073 0.927 9 N -0.409 5.409 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.144 4.144 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.003 4.003 16 N -0.367 5.367 17 C 0.269 3.731 18 O -0.465 6.465 19 C 0.010 3.990 20 N -0.342 5.342 21 C -0.053 4.053 22 C 0.319 3.681 23 O -0.377 6.377 24 N -0.345 5.345 25 C 0.402 3.598 26 O -0.460 6.460 27 H 0.067 0.933 28 H 0.199 0.801 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.259 0.741 42 H 0.193 0.807 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.189 0.811 46 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 36.099 -20.611 -3.606 41.724 hybrid contribution -0.055 1.283 0.631 1.431 sum 36.044 -19.327 -2.975 41.007 Atomic orbital electron populations 1.69893 1.07170 1.26794 1.59576 1.25559 0.96191 1.01427 1.02430 0.85356 0.78592 0.79290 0.78226 1.20212 1.22044 1.17698 1.19097 0.82925 0.93570 1.41653 0.92661 1.42810 1.02554 1.04538 1.91018 1.20875 0.91672 0.87108 0.97973 1.21707 0.93012 0.99258 1.01955 1.21423 0.94287 0.95834 1.02833 1.21457 0.93969 0.97437 1.02386 1.21695 0.91538 0.98195 1.04153 1.21290 0.91952 0.85869 1.01175 1.45874 1.05771 1.10633 1.74382 1.21896 0.83129 0.92651 0.75380 1.90737 1.69187 1.35419 1.51140 1.21515 0.74403 0.93219 1.09841 1.47125 1.08123 1.73323 1.05617 1.22784 0.84373 1.08694 0.89498 1.21190 0.91458 0.73430 0.82054 1.90867 1.33053 1.47109 1.66644 1.44329 1.11383 1.67556 1.11250 1.15987 0.81345 0.77201 0.85224 1.91007 1.76824 1.57522 1.20648 0.93259 0.80125 0.95801 0.96101 0.92238 0.91866 0.91052 0.91441 0.92233 0.91683 0.89483 0.90214 0.93480 0.92315 0.74099 0.80661 0.84809 0.84843 0.81107 0.72064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.83 13.97 21.65 0.30 -63.53 16 2 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.96 45.95 27.74 68.60 1.90 47.85 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 7 C -0.24 -14.16 10.47 84.03 0.88 -13.28 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.76 -36.60 5.41 -343.47 -1.86 -38.45 16 10 C 0.15 5.62 6.26 86.38 0.54 6.16 16 11 C -0.12 -3.29 5.33 30.59 0.16 -3.13 16 12 C -0.11 -1.99 5.21 30.59 0.16 -1.83 16 13 C -0.11 -1.68 5.21 30.59 0.16 -1.52 16 14 C -0.12 -1.10 5.33 30.59 0.16 -0.94 16 15 C 0.12 1.46 5.67 86.38 0.49 1.95 16 16 N -0.71 -5.28 5.56 -463.06 -2.57 -7.85 16 17 C 0.48 5.56 7.90 87.66 0.69 6.25 16 18 O -0.59 -13.25 16.43 -3.03 -0.05 -13.30 16 19 C 0.13 0.35 6.63 85.63 0.57 0.92 16 20 N -0.60 -4.66 2.51 -846.26 -2.12 -6.79 16 21 C 0.07 0.22 7.66 85.76 0.66 0.87 16 22 C 0.53 5.39 8.81 87.94 0.77 6.17 16 23 O -0.50 -8.51 18.02 -2.88 -0.05 -8.56 16 24 N -0.68 -7.51 5.70 -441.12 -2.52 -10.03 16 25 C 0.70 10.45 8.68 179.44 1.56 12.01 16 26 O -0.58 -13.56 17.71 -3.81 -0.07 -13.63 16 27 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 28 H 0.37 16.59 5.53 -92.71 -0.51 16.08 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.42 -0.09 8.47 -92.71 -0.79 -0.88 16 42 H 0.18 -1.41 8.14 -2.39 -0.02 -1.43 16 43 H 0.13 0.16 8.03 -2.39 -0.02 0.15 16 44 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.17 -0.92 8.14 -2.39 -0.02 -0.94 16 46 H 0.44 3.81 8.96 -92.71 -0.83 2.98 16 Total: -1.00 -91.96 391.94 -0.93 -92.89 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -1.17 Total: 11.16 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 7.27 Total: 10.23 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -8.76 Total: -126.64 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.17 Total: -35.49 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -91.96 -0.93 -92.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179838762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.160 kcal (2) G-P(sol) polarization free energy of solvation -91.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds