Wall clock time and date at job start Fri Apr 10 2020 18:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 110.39238 * 2 1 4 4 C 1.54388 * 110.34322 * 237.77216 * 2 1 3 5 5 N 1.48154 * 104.61863 * 217.26703 * 4 2 1 6 6 C 1.34773 * 127.83541 * 219.58805 * 5 4 2 7 7 O 1.21353 * 120.00047 * 180.02562 * 6 5 4 8 8 C 1.49454 * 120.00135 * 359.73972 * 6 5 4 9 9 N 1.34777 * 120.00164 * 180.27489 * 8 6 5 10 10 O 1.21343 * 119.99752 * 0.28157 * 8 6 5 11 11 C 1.48146 * 104.32528 * 39.83843 * 5 4 2 12 12 C 1.54285 * 110.34256 * 122.23479 * 2 1 3 13 13 C 1.53001 * 110.34265 * 359.97438 * 12 2 1 14 14 C 1.53002 * 110.34399 * 237.84611 * 12 2 1 15 15 N 1.46894 * 109.47514 * 179.97438 * 14 12 2 16 16 C 1.46903 * 111.00223 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.46914 * 180.02562 * 16 15 14 18 18 O 1.21293 * 120.00294 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99778 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00357 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99643 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00399 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99774 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00023 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47236 * 60.00417 * 24 22 20 26 26 H 1.48506 * 109.47131 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47382 * 300.00364 * 24 22 20 28 28 H 1.08999 * 109.47527 * 180.77876 * 1 2 3 29 29 H 1.09003 * 109.47281 * 300.77831 * 1 2 3 30 30 H 1.09001 * 109.47163 * 60.77626 * 1 2 3 31 31 H 1.08993 * 110.40903 * 98.47931 * 4 2 1 32 32 H 1.08999 * 110.50419 * 336.09180 * 4 2 1 33 33 H 0.97000 * 119.99555 * 0.02562 * 9 8 6 34 34 H 0.96991 * 120.00395 * 180.02562 * 9 8 6 35 35 H 1.09000 * 110.40368 * 78.93850 * 11 5 4 36 36 H 1.08991 * 110.41121 * 201.37181 * 11 5 4 37 37 H 1.09001 * 109.47066 * 60.00142 * 13 12 2 38 38 H 1.09007 * 109.47050 * 180.02562 * 13 12 2 39 39 H 1.08999 * 109.47018 * 299.99920 * 13 12 2 40 40 H 1.09007 * 109.46747 * 300.00201 * 14 12 2 41 41 H 1.09003 * 109.47026 * 59.99562 * 14 12 2 42 42 H 1.00893 * 111.00466 * 303.95779 * 15 14 12 43 43 H 1.08996 * 109.47326 * 300.00478 * 16 15 14 44 44 H 1.08997 * 109.46503 * 60.00271 * 16 15 14 45 45 H 0.97008 * 120.00279 * 359.97438 * 19 17 16 46 46 H 0.96999 * 119.99934 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0666 -0.7720 -1.2246 5 7 3.2663 -1.4818 -0.7227 6 6 4.4423 -1.6664 -1.3546 7 8 5.3369 -2.2756 -0.8058 8 6 4.6425 -1.1264 -2.7337 9 7 5.8166 -1.3159 -3.3678 10 8 3.7479 -0.5173 -3.2825 11 6 2.8779 -1.9478 0.6288 12 6 2.0663 -0.7716 1.2237 13 6 0.9060 -1.3031 2.0677 14 6 2.9670 0.1313 2.0689 15 7 3.4660 -0.6213 3.2275 16 6 4.3370 0.2157 4.0635 17 6 4.8289 -0.5888 5.2390 18 8 4.4879 -1.7457 5.3676 19 7 5.6478 -0.0227 6.1476 20 6 6.0957 -0.7546 7.2168 21 1 5.7928 -1.7850 7.3308 22 6 6.9404 -0.1712 8.1532 23 7 7.3094 1.0823 8.0142 24 14 7.5501 -1.1684 9.6103 25 1 8.3145 -2.3436 9.1209 26 1 8.4301 -0.3221 10.4558 27 1 6.3900 -1.6319 10.4132 28 1 -0.3634 -1.0275 0.0140 29 1 -0.3634 0.5259 0.8829 30 1 -0.3633 0.5017 -0.8969 31 1 2.3400 -0.0794 -2.0205 32 1 1.3242 -1.4859 -1.5812 33 1 6.5315 -1.8030 -2.9292 34 1 5.9467 -0.9651 -4.2627 35 1 2.2593 -2.8426 0.5590 36 1 3.7639 -2.1434 1.2327 37 1 0.2952 -1.9743 1.4640 38 1 1.3005 -1.8447 2.9275 39 1 0.2960 -0.4685 2.4132 40 1 3.8091 0.4713 1.4659 41 1 2.3961 0.9932 2.4143 42 1 2.7033 -1.0018 3.7673 43 1 5.1887 0.5556 3.4744 44 1 3.7760 1.0785 4.4224 45 1 5.9208 0.9024 6.0447 46 1 7.8988 1.4897 8.6681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182456764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:56 Heat of formation + Delta-G solvation = -96.121512 kcal Electronic energy + Delta-G solvation = -28306.038452 eV Core-core repulsion = 24230.905328 eV Total energy + Delta-G solvation = -4075.133125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03701 -39.63070 -38.27578 -38.04037 -35.52088 -34.23195 -33.80447 -33.28135 -31.28298 -30.94018 -27.90213 -27.52971 -26.06624 -25.51787 -24.20137 -23.45089 -21.52485 -20.15816 -19.32597 -18.78702 -18.14249 -17.84100 -17.25113 -16.66044 -16.32419 -16.16947 -15.54650 -15.38457 -15.13774 -14.52841 -14.45498 -14.38124 -14.02452 -13.83367 -13.66846 -13.46187 -13.15326 -13.07835 -12.55770 -12.30078 -12.14342 -12.06123 -11.85570 -11.58605 -11.50622 -11.44762 -11.39727 -10.99966 -10.74940 -10.57108 -10.52200 -10.42105 -10.22856 -10.18498 -9.72170 -9.47242 -8.98054 -8.42737 -8.02515 -7.92900 -6.39031 -3.79762 1.20796 2.17773 3.00595 3.22181 3.27464 3.32125 3.44705 3.94142 4.06050 4.20103 4.27461 4.33332 4.49713 4.68123 4.94218 5.04142 5.10336 5.18807 5.23592 5.28962 5.36645 5.46255 5.53058 5.57441 5.65266 5.71850 5.74582 5.81375 5.88180 5.88434 5.92371 6.01407 6.07093 6.16371 6.24137 6.29526 6.32891 6.64406 7.18180 7.22670 7.49890 7.57587 7.69672 7.78495 8.09005 8.64249 9.20554 9.57332 10.08921 10.78787 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.002638 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.752018 B =10611.984987 C =11730.047473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.083 0.917 4 C 0.092 3.908 5 N -0.592 5.592 6 C 0.520 3.480 7 O -0.514 6.514 8 C 0.519 3.481 9 N -0.822 5.822 10 O -0.522 6.522 11 C 0.115 3.885 12 C -0.066 4.066 13 C -0.145 4.145 14 C 0.074 3.926 15 N -0.668 5.668 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.415 0.585 34 H 0.410 0.590 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.349 0.651 43 H 0.084 0.916 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 0.588 -21.753 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.101 0.899 4 C -0.030 4.030 5 N -0.326 5.326 6 C 0.303 3.697 7 O -0.390 6.390 8 C 0.298 3.702 9 N -0.388 5.388 10 O -0.398 6.398 11 C -0.007 4.007 12 C -0.068 4.068 13 C -0.202 4.202 14 C -0.056 4.056 15 N -0.301 5.301 16 C -0.081 4.081 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.246 0.754 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.170 0.830 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.626 -0.348 -21.823 24.275 hybrid contribution 0.376 0.758 0.909 1.242 sum -10.250 0.410 -20.914 23.294 Atomic orbital electron populations 1.21893 0.93812 1.02344 1.01955 1.22209 0.96413 0.99723 0.93674 0.89911 1.22971 0.85993 0.96503 0.97570 1.48703 1.12226 1.53559 1.18072 1.19563 0.82031 0.81677 0.86454 1.90833 1.40738 1.40535 1.66876 1.20157 0.83096 0.79949 0.86983 1.43540 1.15969 1.58690 1.20636 1.90707 1.41460 1.40335 1.67271 1.22725 1.00898 0.95690 0.81345 1.21586 0.95341 0.95249 0.94604 1.21985 0.96878 1.01316 1.00056 1.21970 0.97088 0.93893 0.92665 1.60078 1.24240 1.35475 1.10352 1.21653 0.97595 0.94350 0.94547 1.19797 0.84171 0.88382 0.84910 1.90518 1.61244 1.17641 1.77274 1.41857 1.42211 1.14109 1.21912 1.19656 1.25697 0.97392 1.00110 0.87979 1.25255 0.97183 0.96086 0.99425 1.69606 1.35723 1.11894 1.37213 0.85918 0.78694 0.79137 0.80472 1.19866 1.21003 1.19936 0.91909 0.91874 0.92590 0.87251 0.90790 0.75407 0.75750 0.90710 0.87297 0.91885 0.91363 0.91951 0.91221 0.95120 0.82968 0.89743 0.93948 0.77487 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 7.93 37.15 0.29 -0.64 16 2 C -0.10 -0.85 3.31 -89.22 -0.30 -1.14 16 3 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 4 C 0.09 0.86 6.14 -2.40 -0.01 0.84 16 5 N -0.59 -6.96 3.31 -169.56 -0.56 -7.52 16 6 C 0.52 6.70 7.98 -11.59 -0.09 6.61 16 7 O -0.51 -8.07 16.74 5.49 0.09 -7.97 16 8 C 0.52 5.53 8.14 -11.58 -0.09 5.43 16 9 N -0.82 -5.80 8.87 30.90 0.27 -5.52 16 10 O -0.52 -6.28 14.61 5.50 0.08 -6.20 16 11 C 0.11 1.39 6.08 -2.19 -0.01 1.37 16 12 C -0.07 -0.68 0.82 -152.89 -0.13 -0.81 16 13 C -0.14 -1.32 6.95 37.16 0.26 -1.06 16 14 C 0.07 0.91 4.45 -3.83 -0.02 0.89 16 15 N -0.67 -10.70 5.44 -115.06 -0.63 -11.33 16 16 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 17 C 0.44 10.60 7.82 -10.99 -0.09 10.51 16 18 O -0.58 -15.95 15.78 5.55 0.09 -15.87 16 19 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 20 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 24 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H 0.06 0.39 6.61 -51.93 -0.34 0.05 16 29 H 0.06 0.41 6.98 -51.93 -0.36 0.04 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 1.10 5.49 -51.93 -0.29 0.82 16 32 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 33 H 0.42 2.60 8.30 -40.82 -0.34 2.26 16 34 H 0.41 1.90 8.93 -40.82 -0.36 1.54 16 35 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 36 H 0.11 1.69 7.14 -51.93 -0.37 1.32 16 37 H 0.06 0.49 6.67 -51.93 -0.35 0.14 16 38 H 0.07 0.73 6.51 -51.92 -0.34 0.40 16 39 H 0.06 0.51 6.89 -51.93 -0.36 0.16 16 40 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.35 5.65 6.43 -39.30 -0.25 5.40 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -34.25 372.37 -6.38 -40.63 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -6.52 Total: 15.83 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -0.46 Total: 14.80 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.25 Total: -63.13 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: 0.26 Total: -30.04 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.25 -6.38 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182456764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.495 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds