Wall clock time and date at job start Fri Apr 10 2020 18:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99848 * 2 1 4 4 C 1.53001 * 109.47155 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46954 * 61.20075 * 4 3 2 6 6 C 1.36934 * 120.00522 * 273.27342 * 5 4 3 7 7 H 1.08008 * 119.99465 * 338.65055 * 6 5 4 8 8 C 1.38804 * 120.00507 * 158.64930 * 6 5 4 9 9 N 1.31621 * 119.99840 * 7.65248 * 8 6 5 10 10 Si 1.86801 * 120.00442 * 187.65088 * 8 6 5 11 11 H 1.48502 * 109.47089 * 89.99803 * 10 8 6 12 12 H 1.48498 * 109.47367 * 210.00147 * 10 8 6 13 13 H 1.48504 * 109.46921 * 330.00579 * 10 8 6 14 14 C 1.46505 * 119.99666 * 93.27705 * 5 4 3 15 15 N 1.46505 * 109.46981 * 286.15159 * 14 5 4 16 16 C 1.35078 * 130.88435 * 277.92938 * 15 14 5 17 17 O 1.21285 * 135.57276 * 359.97438 * 16 15 14 18 18 C 1.50931 * 88.86518 * 180.02562 * 16 15 14 19 19 C 1.52998 * 113.26960 * 115.00683 * 18 16 15 20 20 C 1.53002 * 113.27249 * 244.81047 * 18 16 15 21 21 C 1.47267 * 130.90218 * 97.83056 * 15 14 5 22 22 H 1.09001 * 114.18499 * 293.63407 * 21 15 14 23 23 C 1.52994 * 114.19665 * 66.32581 * 21 15 14 24 24 H 1.09002 * 110.33523 * 44.48937 * 23 21 15 25 25 C 1.54482 * 110.37182 * 282.24577 * 23 21 15 26 26 C 1.54512 * 104.06310 * 217.19246 * 25 23 21 27 27 C 1.54488 * 104.06030 * 359.97438 * 26 25 23 28 28 O 1.44426 * 110.37544 * 166.74206 * 23 21 15 29 29 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46911 * 299.99788 * 1 2 3 31 31 H 1.08994 * 109.46925 * 60.00524 * 1 2 3 32 32 H 1.08994 * 109.47374 * 59.99794 * 3 2 1 33 33 H 1.09006 * 109.46780 * 299.99379 * 3 2 1 34 34 H 1.08997 * 109.47125 * 301.20391 * 4 3 2 35 35 H 1.09000 * 109.47134 * 181.20175 * 4 3 2 36 36 H 0.96999 * 119.99796 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.47039 * 166.15954 * 14 5 4 38 38 H 1.08990 * 109.47776 * 46.15540 * 14 5 4 39 39 H 1.09010 * 109.47000 * 199.81332 * 19 18 16 40 40 H 1.09004 * 109.47529 * 79.82159 * 19 18 16 41 41 H 1.08997 * 109.47696 * 319.80921 * 19 18 16 42 42 H 1.08999 * 109.46786 * 280.18251 * 20 18 16 43 43 H 1.08997 * 109.46812 * 40.18283 * 20 18 16 44 44 H 1.08994 * 109.46964 * 160.18390 * 20 18 16 45 45 H 1.09002 * 110.50919 * 335.83041 * 25 23 21 46 46 H 1.08998 * 110.51213 * 98.54401 * 25 23 21 47 47 H 1.08993 * 110.51293 * 118.63884 * 26 25 23 48 48 H 1.08999 * 110.50927 * 241.35279 * 26 25 23 49 49 H 1.09007 * 110.36688 * 142.80834 * 27 26 25 50 50 H 1.08989 * 110.37334 * 265.14799 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9702 0.4826 -1.2095 6 6 4.0268 -0.8855 -1.2244 7 1 4.0938 -1.4333 -0.2960 8 6 3.9980 -1.5683 -2.4326 9 7 4.0684 -0.9031 -3.5662 10 14 3.8594 -3.4310 -2.4498 11 1 2.4267 -3.8206 -2.4799 12 1 4.5436 -3.9673 -3.6538 13 1 4.4977 -3.9862 -1.2292 14 6 4.3445 1.2443 -2.4037 15 7 3.1380 1.7788 -3.0400 16 6 2.2538 1.2027 -3.8831 17 8 2.1308 0.1101 -4.3952 18 6 1.4851 2.5011 -3.9164 19 6 1.4784 3.1644 -5.2951 20 6 0.0844 2.3901 -3.3108 21 6 2.5128 3.1096 -2.9568 22 1 2.1132 3.3545 -1.9727 23 6 3.3497 4.2349 -3.5685 24 1 3.7590 3.9231 -4.5294 25 6 4.4873 4.6430 -2.6064 26 6 4.5892 6.1756 -2.7741 27 6 3.5014 6.5120 -3.8183 28 8 2.5504 5.4275 -3.7257 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8553 0.6254 0.8798 35 1 3.9787 2.1802 0.0222 36 1 4.0479 -1.3802 -4.4105 37 1 4.8649 0.5903 -3.1034 38 1 5.0002 2.0671 -2.1192 39 1 1.2329 4.2212 -5.1887 40 1 0.7341 2.6805 -5.9276 41 1 2.4632 3.0645 -5.7513 42 1 -0.5921 1.9437 -4.0396 43 1 0.1227 1.7640 -2.4193 44 1 -0.2750 3.3833 -3.0421 45 1 4.2285 4.3877 -1.5788 46 1 5.4227 4.1641 -2.8960 47 1 4.3807 6.6779 -1.8296 48 1 5.5749 6.4543 -3.1466 49 1 3.0213 7.4597 -3.5740 50 1 3.9341 6.5513 -4.8178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840152045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:06 Heat of formation + Delta-G solvation = -43.963506 kcal Electronic energy + Delta-G solvation = -31892.869868 eV Core-core repulsion = 27923.538828 eV Total energy + Delta-G solvation = -3969.331040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.60779 -38.66942 -37.18810 -35.35395 -35.24805 -32.25292 -31.54999 -31.42421 -29.63399 -28.45344 -27.10792 -26.32358 -25.63294 -24.25177 -23.21312 -21.84656 -21.14525 -20.80149 -19.88354 -17.16198 -16.94230 -16.33873 -16.05179 -15.71541 -15.48300 -15.32835 -14.98186 -14.75508 -14.57125 -14.07855 -13.95927 -13.71736 -13.33195 -13.23126 -12.85197 -12.73265 -12.23155 -12.08838 -12.00928 -11.81429 -11.67367 -11.56875 -11.44005 -11.32678 -11.12396 -10.98013 -10.91463 -10.81866 -10.74082 -10.53583 -10.28102 -10.05603 -10.02629 -9.87942 -9.64685 -9.61177 -8.81267 -8.69099 -7.96734 -7.58011 -6.73163 -5.43721 -2.99495 3.54734 3.61455 3.62926 3.64186 3.92503 4.51008 4.57903 4.63309 4.69312 4.71772 4.88220 4.98402 5.08078 5.20465 5.36646 5.46144 5.48754 5.52501 5.58243 5.66225 5.71540 5.72194 5.78147 5.82143 5.85405 5.98468 6.01245 6.03195 6.05961 6.10384 6.15828 6.17010 6.23779 6.25264 6.32436 6.33210 6.39973 6.47549 6.52384 6.72653 6.86545 6.92222 7.69565 7.91448 8.01111 8.12227 8.20303 8.69320 9.42074 9.77468 9.99109 10.41887 11.46188 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.005370 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.884660 B = 5212.965987 C = 5339.022428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.040 3.960 4 C 0.143 3.857 5 N -0.576 5.576 6 C -0.246 4.246 7 H 0.069 0.931 8 C 0.008 3.992 9 N -0.871 5.871 10 Si 0.908 3.092 11 H -0.291 1.291 12 H -0.296 1.296 13 H -0.286 1.286 14 C 0.340 3.660 15 N -0.603 5.603 16 C 0.558 3.442 17 O -0.461 6.461 18 C -0.137 4.137 19 C -0.123 4.123 20 C -0.123 4.123 21 C 0.133 3.867 22 H 0.085 0.915 23 C 0.082 3.918 24 H 0.075 0.925 25 C -0.147 4.147 26 C -0.154 4.154 27 C 0.045 3.955 28 O -0.366 6.366 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.019 0.981 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.259 0.741 37 H 0.160 0.840 38 H 0.015 0.985 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 15.430 1.196 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C -0.039 4.039 4 C 0.015 3.985 5 N -0.297 5.297 6 C -0.375 4.375 7 H 0.087 0.913 8 C -0.191 4.191 9 N -0.516 5.516 10 Si 0.739 3.261 11 H -0.219 1.219 12 H -0.223 1.223 13 H -0.212 1.212 14 C 0.134 3.866 15 N -0.344 5.344 16 C 0.340 3.660 17 O -0.329 6.329 18 C -0.142 4.142 19 C -0.181 4.181 20 C -0.181 4.181 21 C 0.027 3.973 22 H 0.103 0.897 23 C 0.024 3.976 24 H 0.093 0.907 25 C -0.184 4.184 26 C -0.192 4.192 27 C -0.033 4.033 28 O -0.284 6.284 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.176 0.824 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.242 14.427 0.818 14.623 hybrid contribution -0.453 -0.457 0.250 0.690 sum -2.695 13.970 1.068 14.268 Atomic orbital electron populations 1.22631 0.83820 1.01646 0.98332 1.88161 1.16958 1.27169 1.94834 1.23490 0.98145 0.84795 0.97471 1.21001 0.89716 0.95664 0.92132 1.44796 1.73181 1.03546 1.08150 1.19035 1.44685 0.81194 0.92577 0.91313 1.24911 1.00951 0.97792 0.95429 1.69268 1.52219 1.33101 0.97020 0.86211 0.77539 0.86142 0.76178 1.21875 1.22256 1.21226 1.22335 0.83740 0.91939 0.88556 1.52272 1.27802 1.07977 1.46376 1.20696 0.80834 0.86353 0.78116 1.90672 1.71110 1.22237 1.48860 1.23212 0.96603 0.97797 0.96538 1.21579 1.01633 1.00586 0.94300 1.21537 0.94481 1.01348 1.00742 1.22089 0.91626 0.85801 0.97804 0.89696 1.23098 0.90452 0.85978 0.98120 0.90673 1.22964 0.99627 0.94826 1.01022 1.22937 0.99608 0.96603 1.00062 1.23381 0.90304 0.91460 0.98113 1.89133 1.29541 1.15452 1.94252 0.90640 0.95671 0.95038 0.96339 0.93833 0.93226 0.93257 0.92885 0.82410 0.96689 0.91206 0.92733 0.92775 0.92319 0.92555 0.92357 0.90640 0.90234 0.90935 0.90829 0.89466 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.35 -7.78 9.86 -35.23 -0.35 -8.13 16 3 C 0.04 0.78 6.30 37.16 0.23 1.02 16 4 C 0.14 2.87 6.18 -4.04 -0.02 2.84 16 5 N -0.58 -13.72 2.75 -176.94 -0.49 -14.20 16 6 C -0.25 -6.67 8.94 -15.06 -0.13 -6.81 16 7 H 0.07 1.92 7.84 -52.48 -0.41 1.50 16 8 C 0.01 0.22 5.42 -17.43 -0.09 0.12 16 9 N -0.87 -24.66 6.07 55.49 0.34 -24.32 16 10 Si 0.91 23.33 29.56 -169.99 -5.02 18.31 16 11 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 12 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.34 7.64 6.36 -63.74 -0.41 7.24 16 15 N -0.60 -12.41 2.84 -201.25 -0.57 -12.98 16 16 C 0.56 12.76 8.10 -10.74 -0.09 12.67 16 17 O -0.46 -12.68 14.93 5.55 0.08 -12.59 16 18 C -0.14 -2.41 1.35 -156.60 -0.21 -2.62 16 19 C -0.12 -1.90 7.92 37.16 0.29 -1.61 16 20 C -0.12 -1.98 9.05 37.16 0.34 -1.65 16 21 C 0.13 2.20 3.18 -67.40 -0.21 1.99 16 22 H 0.09 1.42 6.52 -51.93 -0.34 1.08 16 23 C 0.08 1.16 2.42 -25.96 -0.06 1.10 16 24 H 0.08 1.13 6.81 -51.93 -0.35 0.78 16 25 C -0.15 -1.81 5.74 -25.16 -0.14 -1.96 16 26 C -0.15 -1.50 7.09 -25.16 -0.18 -1.67 16 27 C 0.04 0.45 7.63 37.94 0.29 0.74 16 28 O -0.37 -4.88 9.86 -35.23 -0.35 -5.22 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.54 6.76 -51.93 -0.35 0.19 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.04 0.86 4.62 -51.93 -0.24 0.62 16 34 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.05 0.86 8.04 -51.93 -0.42 0.45 16 36 H 0.26 7.57 8.11 -40.82 -0.33 7.24 16 37 H 0.16 4.16 4.94 -57.82 -0.29 3.87 16 38 H 0.02 0.31 6.90 -51.93 -0.36 -0.05 16 39 H 0.07 0.98 6.69 -51.92 -0.35 0.63 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.86 6.98 -51.93 -0.36 0.50 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.00 5.91 -51.93 -0.31 0.69 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 46 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 50 H 0.06 0.52 8.14 -51.94 -0.42 0.10 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -31.44 379.22 -8.30 -39.74 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.36 Total: 0.60 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 0.71 Total: 13.10 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.72 Total: -51.50 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.61 Total: -25.95 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.44 -8.30 -39.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840152045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.228 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds