Wall clock time and date at job start Fri Apr 10 2020 18:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99848 * 2 1 4 4 C 1.53001 * 109.47155 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46954 * 61.20075 * 4 3 2 6 6 C 1.36934 * 120.00522 * 273.27342 * 5 4 3 7 7 H 1.08008 * 119.99465 * 338.65055 * 6 5 4 8 8 C 1.38804 * 120.00507 * 158.64930 * 6 5 4 9 9 N 1.31621 * 119.99840 * 7.65248 * 8 6 5 10 10 Si 1.86801 * 120.00442 * 187.65088 * 8 6 5 11 11 H 1.48502 * 109.47089 * 89.99803 * 10 8 6 12 12 H 1.48498 * 109.47367 * 210.00147 * 10 8 6 13 13 H 1.48504 * 109.46921 * 330.00579 * 10 8 6 14 14 C 1.46505 * 119.99666 * 93.27705 * 5 4 3 15 15 N 1.46505 * 109.46981 * 286.15159 * 14 5 4 16 16 C 1.35078 * 130.88435 * 277.92938 * 15 14 5 17 17 O 1.21285 * 135.57276 * 359.97438 * 16 15 14 18 18 C 1.50931 * 88.86518 * 180.02562 * 16 15 14 19 19 C 1.52998 * 113.26960 * 115.00683 * 18 16 15 20 20 C 1.53002 * 113.27249 * 244.81047 * 18 16 15 21 21 C 1.47267 * 130.90218 * 97.83056 * 15 14 5 22 22 H 1.09001 * 114.18499 * 293.63407 * 21 15 14 23 23 C 1.52994 * 114.19665 * 66.32581 * 21 15 14 24 24 H 1.09002 * 110.33523 * 44.48937 * 23 21 15 25 25 C 1.54482 * 110.37182 * 282.24577 * 23 21 15 26 26 C 1.54512 * 104.06310 * 217.19246 * 25 23 21 27 27 C 1.54488 * 104.06030 * 359.97438 * 26 25 23 28 28 O 1.44426 * 110.37544 * 166.74206 * 23 21 15 29 29 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46911 * 299.99788 * 1 2 3 31 31 H 1.08994 * 109.46925 * 60.00524 * 1 2 3 32 32 H 1.08994 * 109.47374 * 59.99794 * 3 2 1 33 33 H 1.09006 * 109.46780 * 299.99379 * 3 2 1 34 34 H 1.08997 * 109.47125 * 301.20391 * 4 3 2 35 35 H 1.09000 * 109.47134 * 181.20175 * 4 3 2 36 36 H 0.96999 * 119.99796 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.47039 * 166.15954 * 14 5 4 38 38 H 1.08990 * 109.47776 * 46.15540 * 14 5 4 39 39 H 1.09010 * 109.47000 * 199.81332 * 19 18 16 40 40 H 1.09004 * 109.47529 * 79.82159 * 19 18 16 41 41 H 1.08997 * 109.47696 * 319.80921 * 19 18 16 42 42 H 1.08999 * 109.46786 * 280.18251 * 20 18 16 43 43 H 1.08997 * 109.46812 * 40.18283 * 20 18 16 44 44 H 1.08994 * 109.46964 * 160.18390 * 20 18 16 45 45 H 1.09002 * 110.50919 * 335.83041 * 25 23 21 46 46 H 1.08998 * 110.51213 * 98.54401 * 25 23 21 47 47 H 1.08993 * 110.51293 * 118.63884 * 26 25 23 48 48 H 1.08999 * 110.50927 * 241.35279 * 26 25 23 49 49 H 1.09007 * 110.36688 * 142.80834 * 27 26 25 50 50 H 1.08989 * 110.37334 * 265.14799 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9702 0.4826 -1.2095 6 6 4.0268 -0.8855 -1.2244 7 1 4.0938 -1.4333 -0.2960 8 6 3.9980 -1.5683 -2.4326 9 7 4.0684 -0.9031 -3.5662 10 14 3.8594 -3.4310 -2.4498 11 1 2.4267 -3.8206 -2.4799 12 1 4.5436 -3.9673 -3.6538 13 1 4.4977 -3.9862 -1.2292 14 6 4.3445 1.2443 -2.4037 15 7 3.1380 1.7788 -3.0400 16 6 2.2538 1.2027 -3.8831 17 8 2.1308 0.1101 -4.3952 18 6 1.4851 2.5011 -3.9164 19 6 1.4784 3.1644 -5.2951 20 6 0.0844 2.3901 -3.3108 21 6 2.5128 3.1096 -2.9568 22 1 2.1132 3.3545 -1.9727 23 6 3.3497 4.2349 -3.5685 24 1 3.7590 3.9231 -4.5294 25 6 4.4873 4.6430 -2.6064 26 6 4.5892 6.1756 -2.7741 27 6 3.5014 6.5120 -3.8183 28 8 2.5504 5.4275 -3.7257 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8553 0.6254 0.8798 35 1 3.9787 2.1802 0.0222 36 1 4.0479 -1.3802 -4.4105 37 1 4.8649 0.5903 -3.1034 38 1 5.0002 2.0671 -2.1192 39 1 1.2329 4.2212 -5.1887 40 1 0.7341 2.6805 -5.9276 41 1 2.4632 3.0645 -5.7513 42 1 -0.5921 1.9437 -4.0396 43 1 0.1227 1.7640 -2.4193 44 1 -0.2750 3.3833 -3.0421 45 1 4.2285 4.3877 -1.5788 46 1 5.4227 4.1641 -2.8960 47 1 4.3807 6.6779 -1.8296 48 1 5.5749 6.4543 -3.1466 49 1 3.0213 7.4597 -3.5740 50 1 3.9341 6.5513 -4.8178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840152045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:05 Heat of formation + Delta-G solvation = -63.935756 kcal Electronic energy + Delta-G solvation = -31893.735930 eV Core-core repulsion = 27923.538828 eV Total energy + Delta-G solvation = -3970.197102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.04919 -39.77464 -38.77664 -37.15991 -37.00798 -33.57584 -33.30233 -32.71825 -30.73739 -30.08693 -28.38210 -28.09054 -27.12170 -25.50876 -24.97506 -22.98103 -22.60471 -21.88832 -21.57251 -18.95904 -18.50526 -17.55965 -17.48336 -17.19595 -16.91257 -16.68987 -16.51968 -16.38049 -15.93259 -15.73482 -15.36714 -15.22644 -14.77848 -14.55108 -14.32943 -14.25826 -13.70107 -13.55042 -13.28278 -13.13059 -13.10645 -13.01631 -12.82838 -12.77106 -12.60630 -12.53988 -12.44787 -12.22238 -12.07499 -12.00601 -11.91617 -11.80820 -11.49925 -11.40163 -11.30299 -10.68773 -10.61800 -10.31566 -9.77212 -9.28713 -8.65546 -7.51758 -5.07005 1.43208 1.49548 1.53683 2.19715 2.34361 2.60544 3.14129 3.26684 3.38475 3.51787 3.54837 3.77696 3.87868 3.89532 4.04895 4.12895 4.19076 4.28206 4.37282 4.39591 4.45653 4.52722 4.57252 4.60191 4.67517 4.71608 4.75782 4.77920 4.80212 4.85221 4.87540 4.93338 4.95645 5.04444 5.06820 5.09568 5.18831 5.20375 5.25119 5.27683 5.44974 5.72857 5.81358 5.94796 6.37579 6.45244 6.56313 6.74880 7.36818 8.02306 8.04606 8.39789 9.29899 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.005370 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.884660 B = 5212.965987 C = 5339.022428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.397 6.397 3 C 0.044 3.956 4 C 0.140 3.860 5 N -0.590 5.590 6 C -0.240 4.240 7 H 0.057 0.943 8 C -0.037 4.037 9 N -0.873 5.873 10 Si 0.947 3.053 11 H -0.311 1.311 12 H -0.300 1.300 13 H -0.274 1.274 14 C 0.344 3.656 15 N -0.603 5.603 16 C 0.532 3.468 17 O -0.522 6.522 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.118 4.118 21 C 0.146 3.854 22 H 0.094 0.906 23 C 0.089 3.911 24 H 0.063 0.937 25 C -0.148 4.148 26 C -0.146 4.146 27 C 0.039 3.961 28 O -0.376 6.376 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.240 0.760 37 H 0.121 0.879 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 19.004 2.404 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.315 6.315 3 C -0.035 4.035 4 C 0.014 3.986 5 N -0.313 5.313 6 C -0.371 4.371 7 H 0.075 0.925 8 C -0.234 4.234 9 N -0.519 5.519 10 Si 0.779 3.221 11 H -0.240 1.240 12 H -0.227 1.227 13 H -0.200 1.200 14 C 0.138 3.862 15 N -0.342 5.342 16 C 0.317 3.683 17 O -0.395 6.395 18 C -0.130 4.130 19 C -0.172 4.172 20 C -0.176 4.176 21 C 0.042 3.958 22 H 0.112 0.888 23 C 0.030 3.970 24 H 0.081 0.919 25 C -0.186 4.186 26 C -0.183 4.183 27 C -0.037 4.037 28 O -0.294 6.294 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.138 0.862 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.128 0.872 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.800 18.072 2.061 18.403 hybrid contribution -0.278 -1.466 -0.065 1.493 sum -3.078 16.606 1.995 17.007 Atomic orbital electron populations 1.22747 0.81854 1.02207 0.99712 1.88092 1.19345 1.28943 1.95159 1.23429 0.97150 0.84154 0.98742 1.21149 0.90742 0.96642 0.90064 1.44816 1.74147 1.02626 1.09669 1.19009 1.43405 0.83039 0.91609 0.92534 1.25386 1.02350 0.99888 0.95813 1.69574 1.53365 1.32712 0.96261 0.85577 0.76100 0.84155 0.76261 1.23974 1.22692 1.19960 1.21889 0.84630 0.92060 0.87625 1.52138 1.26971 1.09735 1.45397 1.21660 0.81912 0.87071 0.77687 1.90615 1.72782 1.25115 1.50989 1.23106 0.97243 0.94353 0.98255 1.21532 1.01304 1.01566 0.92812 1.21523 0.93465 1.02788 0.99822 1.22238 0.90747 0.84666 0.98154 0.88830 1.22856 0.90533 0.85803 0.97828 0.91868 1.22953 0.98473 0.97052 1.00144 1.22918 1.00416 0.94284 1.00713 1.23634 0.90120 0.91196 0.98799 1.89102 1.30381 1.15610 1.94332 0.90683 0.92441 0.95276 0.92947 0.94332 0.93800 0.90166 0.94877 0.86226 0.93897 0.88982 0.92507 0.93687 0.92130 0.94455 0.89169 0.90929 0.90778 0.89673 0.89307 0.87222 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 11.01 113.37 1.25 2.32 16 2 O -0.40 -17.20 9.86 -148.98 -1.47 -18.66 16 3 C 0.04 1.61 6.30 71.98 0.45 2.06 16 4 C 0.14 5.42 6.18 86.38 0.53 5.96 16 5 N -0.59 -28.16 2.75 -713.73 -1.96 -30.12 16 6 C -0.24 -13.31 8.94 84.03 0.75 -12.56 16 7 H 0.06 3.22 7.84 -2.91 -0.02 3.20 16 8 C -0.04 -2.17 5.42 84.86 0.46 -1.71 16 9 N -0.87 -51.79 6.07 21.65 0.13 -51.66 16 10 Si 0.95 49.72 29.56 68.60 2.03 51.75 16 11 H -0.31 -17.17 7.11 99.48 0.71 -16.47 16 12 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16 13 H -0.27 -13.66 7.11 99.48 0.71 -12.96 16 14 C 0.34 15.56 6.36 170.95 1.09 16.65 16 15 N -0.60 -24.78 2.84 -908.83 -2.58 -27.36 16 16 C 0.53 24.87 8.10 87.68 0.71 25.58 16 17 O -0.52 -30.14 14.93 -3.04 -0.05 -30.19 16 18 C -0.13 -4.27 1.35 -52.38 -0.07 -4.34 16 19 C -0.11 -3.35 7.92 71.98 0.57 -2.78 16 20 C -0.12 -3.59 9.05 71.98 0.65 -2.94 16 21 C 0.15 4.59 3.18 44.91 0.14 4.73 16 22 H 0.09 2.83 6.52 -2.39 -0.02 2.82 16 23 C 0.09 2.29 2.42 31.10 0.08 2.37 16 24 H 0.06 1.81 6.81 -2.39 -0.02 1.79 16 25 C -0.15 -3.23 5.74 31.61 0.18 -3.05 16 26 C -0.15 -2.23 7.09 31.61 0.22 -2.01 16 27 C 0.04 0.62 7.63 72.49 0.55 1.17 16 28 O -0.38 -8.62 9.86 -148.98 -1.47 -10.09 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 0.98 6.76 -2.39 -0.02 0.96 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.44 4.62 -2.38 -0.01 1.43 16 34 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 35 H 0.08 2.56 8.04 -2.39 -0.02 2.54 16 36 H 0.24 14.87 8.11 -92.71 -0.75 14.12 16 37 H 0.12 6.53 4.94 -14.02 -0.07 6.46 16 38 H 0.04 1.69 6.90 -2.39 -0.02 1.67 16 39 H 0.09 2.30 6.69 -2.38 -0.02 2.29 16 40 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.04 1.39 6.98 -2.39 -0.02 1.38 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.04 1.27 5.91 -2.39 -0.01 1.26 16 44 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.07 1.63 7.87 -2.39 -0.02 1.61 16 46 H 0.07 1.69 7.86 -2.39 -0.02 1.67 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 50 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -72.05 379.22 3.09 -68.96 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.88 Total: 15.94 kcal Atomic # 6 Polarization: 23.86 SS G_CDS: 7.57 Total: 31.44 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.42 Total: -109.14 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -2.98 Total: -58.94 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.03 Total: 51.75 kcal Total: -72.05 3.09 -68.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840152045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.026 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds