Wall clock time and date at job start Fri Apr 10 2020 18:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46845 * 110.99762 * 2 1 4 4 C 1.53040 * 109.52463 * 185.83878 * 3 2 1 5 5 C 1.53114 * 109.27618 * 300.82128 * 4 3 2 6 6 N 1.46505 * 109.52403 * 177.55747 * 5 4 3 7 7 C 1.34771 * 119.99810 * 155.12482 * 6 5 4 8 8 S 1.71199 * 120.00561 * 355.01120 * 7 6 5 9 9 N 1.34786 * 119.99563 * 175.28099 * 7 6 5 10 10 C 1.47081 * 120.88045 * 4.65141 * 9 7 6 11 11 C 1.53698 * 108.27597 * 128.75030 * 10 9 7 12 12 N 1.46901 * 109.25546 * 54.07964 * 11 10 9 13 13 C 1.46903 * 110.99624 * 172.60474 * 12 11 10 14 14 C 1.50692 * 109.47215 * 294.30180 * 13 12 11 15 15 H 1.08001 * 120.00686 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99861 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00335 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46557 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47145 * 119.99664 * 18 16 14 21 21 H 1.48496 * 109.46995 * 240.00432 * 18 16 14 22 22 C 1.46895 * 111.27081 * 296.75927 * 12 11 10 23 23 C 1.47080 * 120.88025 * 184.92395 * 9 7 6 24 24 C 1.53123 * 109.21535 * 57.62074 * 5 4 3 25 25 C 1.46842 * 111.00037 * 124.20733 * 2 1 3 26 26 H 1.09002 * 109.47134 * 60.00479 * 1 2 3 27 27 H 1.08999 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47683 * 299.99860 * 1 2 3 29 29 H 1.08996 * 109.46353 * 65.81897 * 3 2 1 30 30 H 1.09003 * 109.46205 * 305.85289 * 3 2 1 31 31 H 1.08998 * 109.50596 * 180.88114 * 4 3 2 32 32 H 1.09006 * 109.52998 * 60.77770 * 4 3 2 33 33 H 1.08998 * 109.52505 * 297.68401 * 5 4 3 34 34 H 0.97003 * 119.99795 * 335.12420 * 6 5 4 35 35 H 1.08997 * 109.62657 * 248.52235 * 10 9 7 36 36 H 1.08997 * 109.62781 * 9.10201 * 10 9 7 37 37 H 1.09001 * 109.64715 * 294.08012 * 11 10 9 38 38 H 1.08995 * 109.42138 * 173.94745 * 11 10 9 39 39 H 1.08995 * 109.47067 * 54.30899 * 13 12 11 40 40 H 1.09000 * 109.46395 * 174.30709 * 13 12 11 41 41 H 0.96996 * 120.00029 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.49182 * 303.14176 * 22 12 11 43 43 H 1.09000 * 109.49134 * 183.06357 * 22 12 11 44 44 H 1.09002 * 109.62925 * 350.90142 * 23 9 7 45 45 H 1.08998 * 109.62276 * 111.48097 * 23 9 7 46 46 H 1.09004 * 109.50149 * 62.31494 * 24 5 4 47 47 H 1.09000 * 109.50735 * 182.43498 * 24 5 4 48 48 H 1.09001 * 109.46627 * 294.18011 * 25 2 1 49 49 H 1.09004 * 109.46280 * 54.15709 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1187 0.5371 1.0144 6 7 5.5716 0.4490 0.8480 7 6 6.3628 0.2611 1.9227 8 16 5.6842 0.2530 3.4944 9 7 7.6892 0.0849 1.7605 10 6 8.3083 0.1949 0.4308 11 6 9.4974 1.1636 0.5315 12 7 10.3990 0.7144 1.6007 13 6 11.6346 1.5089 1.6157 14 6 12.4117 1.2532 0.3502 15 1 12.0262 0.5692 -0.3914 16 6 13.6149 1.8924 0.1391 17 7 14.0847 2.7250 1.0424 18 14 14.5781 1.5761 -1.4300 19 1 13.8388 0.6063 -2.2774 20 1 14.7487 2.8513 -2.1717 21 1 15.9118 1.0197 -1.0884 22 6 9.7334 0.7511 2.9096 23 6 8.5550 -0.2284 2.9074 24 6 3.5183 -0.8715 1.0225 25 6 1.9953 -0.7707 1.1337 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7323 1.8608 0.9375 30 1 1.5634 1.9257 -0.8330 31 1 3.9099 2.3513 -0.1310 32 1 3.7819 0.8572 -1.0907 33 1 3.8896 1.0361 1.9559 34 1 5.9641 0.5259 -0.0358 35 1 8.6572 -0.7857 0.1072 36 1 7.5793 0.5808 -0.2817 37 1 9.1351 2.1662 0.7586 38 1 10.0353 1.1768 -0.4164 39 1 11.3848 2.5678 1.6811 40 1 12.2390 1.2242 2.4770 41 1 14.9310 3.1750 0.8936 42 1 9.3679 1.7595 3.1036 43 1 10.4426 0.4651 3.6864 44 1 7.9891 -0.1225 3.8330 45 1 8.9272 -1.2489 2.8172 46 1 3.7815 -1.3846 0.0975 47 1 3.9102 -1.4293 1.8730 48 1 1.7324 -0.2708 2.0660 49 1 1.5636 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865268606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:10 Heat of formation + Delta-G solvation = 35.043454 kcal Electronic energy + Delta-G solvation = -26122.130905 eV Core-core repulsion = 22631.271486 eV Total energy + Delta-G solvation = -3490.859419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.24792 -39.21671 -37.10375 -35.08154 -32.82173 -31.98162 -31.26553 -31.07553 -28.69976 -26.72286 -25.68089 -24.22371 -23.60068 -23.22727 -22.31165 -21.61109 -20.51351 -19.61634 -18.06115 -17.43101 -16.45775 -16.11615 -15.60418 -15.42370 -15.08009 -14.84428 -14.73282 -14.59336 -14.48396 -14.27445 -13.91461 -13.76153 -13.47260 -12.89569 -12.80268 -12.53562 -12.43408 -12.09206 -11.85440 -11.62754 -11.54400 -11.46715 -11.34441 -11.16124 -11.05479 -10.91861 -10.84440 -10.75818 -10.63928 -10.56770 -9.99244 -9.37472 -8.86640 -8.72155 -8.56341 -7.69075 -7.46746 -7.27432 -6.14690 -4.17603 1.49372 1.98580 2.63504 3.16711 3.22348 3.30459 3.33359 3.54562 4.29435 4.31620 4.48400 4.53751 4.66483 4.79083 4.88416 4.93360 5.08713 5.11132 5.12322 5.14439 5.16790 5.21566 5.25366 5.37675 5.39595 5.47086 5.49980 5.54586 5.58971 5.62569 5.66842 5.83209 5.94457 5.99020 6.11498 6.20452 6.27327 6.28184 6.44648 6.65203 6.68765 6.84358 7.09338 7.16148 7.24658 7.62775 7.87724 7.99143 8.34751 8.89280 9.47430 10.95957 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.002492 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.823842 B =11231.013201 C =12061.429085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.061 3.939 4 C -0.126 4.126 5 C 0.144 3.856 6 N -0.688 5.688 7 C 0.572 3.428 8 S -0.673 6.673 9 N -0.558 5.558 10 C 0.097 3.903 11 C 0.053 3.947 12 N -0.536 5.536 13 C 0.194 3.806 14 C -0.512 4.512 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.283 1.283 22 C 0.041 3.959 23 C 0.109 3.891 24 C -0.124 4.124 25 C 0.060 3.940 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.396 0.604 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.103 0.897 39 H -0.008 1.008 40 H 0.034 0.966 41 H 0.262 0.738 42 H 0.031 0.969 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.041 0.959 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.625 -4.882 -3.914 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.067 4.067 4 C -0.164 4.164 5 C 0.039 3.961 6 N -0.320 5.320 7 C 0.212 3.788 8 S -0.544 6.544 9 N -0.266 5.266 10 C -0.028 4.028 11 C -0.077 4.077 12 N -0.261 5.261 13 C 0.069 3.931 14 C -0.551 4.551 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.088 4.088 23 C -0.014 4.014 24 C -0.163 4.163 25 C -0.068 4.068 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.235 0.765 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.121 0.879 39 H 0.010 0.990 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.107 0.893 44 H 0.142 0.858 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.059 0.941 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.588 -5.486 -3.411 24.457 hybrid contribution 0.802 1.247 -1.252 1.941 sum -22.786 -4.239 -4.663 23.641 Atomic orbital electron populations 1.22343 0.87071 1.02207 1.00711 1.61974 1.07766 1.13586 1.43770 1.21988 0.94098 0.89472 1.01161 1.21888 0.95357 1.00632 0.98531 1.21452 0.76002 0.97380 1.01254 1.45167 1.07649 1.71668 1.07533 1.22207 0.83557 0.80064 0.93007 1.93257 1.77373 1.77136 1.06676 1.47520 1.03887 1.64057 1.11092 1.22380 0.95501 1.02462 0.82476 1.22377 0.92045 0.94141 0.99088 1.62134 1.05932 1.56713 1.01328 1.19742 0.84612 0.90250 0.98503 1.21137 1.04670 1.25635 1.03651 0.91814 1.25005 0.97501 0.95082 0.96973 1.69962 1.20464 1.28570 1.34417 0.86438 0.79972 0.77950 0.83019 1.19682 1.21084 1.20903 1.22431 0.95078 0.97320 0.93997 1.22474 0.90131 0.99524 0.89271 1.21943 0.94398 0.96642 1.03301 1.22032 0.94797 0.98459 0.91500 0.91347 0.91280 0.95514 0.94216 0.90152 0.90610 0.90579 0.86780 0.76497 0.89137 0.90894 0.95395 0.87934 0.98978 0.94747 0.92811 0.95057 0.89315 0.85845 0.89958 0.91341 0.89744 0.94112 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.59 60.07 0.58 0.73 16 2 N -0.55 -4.24 4.91 -242.96 -1.19 -5.43 16 3 C 0.06 0.44 5.46 -3.83 -0.02 0.42 16 4 C -0.13 -0.94 5.57 -26.65 -0.15 -1.09 16 5 C 0.14 1.39 2.32 -67.80 -0.16 1.23 16 6 N -0.69 -7.23 4.99 -55.40 -0.28 -7.51 16 7 C 0.57 7.90 7.69 -86.91 -0.67 7.23 16 8 S -0.67 -11.47 26.19 -107.50 -2.82 -14.29 16 9 N -0.56 -7.71 3.00 -174.20 -0.52 -8.23 16 10 C 0.10 1.22 6.57 -3.36 -0.02 1.20 16 11 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 12 N -0.54 -10.47 4.62 -235.48 -1.09 -11.56 16 13 C 0.19 4.74 4.72 -4.98 -0.02 4.71 16 14 C -0.51 -13.48 8.41 -34.44 -0.29 -13.77 16 15 H 0.06 1.64 7.13 -52.49 -0.37 1.26 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 18 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.04 0.70 5.62 -3.71 -0.02 0.68 16 23 C 0.11 1.61 6.51 -3.60 -0.02 1.58 16 24 C -0.12 -1.16 5.67 -26.65 -0.15 -1.31 16 25 C 0.06 0.50 5.46 -3.83 -0.02 0.48 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 1.39 6.70 -51.93 -0.35 1.04 16 34 H 0.40 3.40 6.14 -40.82 -0.25 3.15 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.70 5.73 -51.93 -0.30 0.40 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 1.82 6.67 -51.93 -0.35 1.48 16 39 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 40 H 0.03 0.91 7.97 -51.93 -0.41 0.49 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.48 7.99 -51.93 -0.41 1.06 16 44 H 0.12 1.92 5.99 -50.64 -0.30 1.61 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.96 7.84 -51.93 -0.41 0.56 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -30.93 384.82 -14.09 -45.02 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.62 Total: 1.11 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.09 Total: 4.41 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -2.34 Total: -57.69 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -11.47 SS G_CDS: -2.82 Total: -14.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.93 -14.09 -45.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.064 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds