Wall clock time and date at job start Fri Apr 10 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86790 * 120.00037 * 2 1 4 4 H 1.48506 * 109.46927 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47264 * 300.00376 * 3 2 1 6 6 H 1.48502 * 109.47405 * 60.00351 * 3 2 1 7 7 C 1.37875 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00272 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00062 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00190 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00162 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.47477 * 179.97438 * 13 11 10 15 15 C 1.46894 * 111.00157 * 185.01915 * 14 13 11 16 16 H 1.08992 * 109.47623 * 329.95242 * 15 14 13 17 17 C 1.52999 * 109.47082 * 209.94909 * 15 14 13 18 18 H 1.09004 * 110.33294 * 180.70492 * 17 15 14 19 19 C 1.54474 * 110.37281 * 58.44989 * 17 15 14 20 20 C 1.54508 * 104.06418 * 217.18835 * 19 17 15 21 21 C 1.54470 * 104.06625 * 0.02562 * 20 19 17 22 22 O 1.44424 * 110.37213 * 302.95364 * 17 15 14 23 23 C 1.53002 * 109.46624 * 89.95198 * 15 14 13 24 24 C 1.53003 * 112.85283 * 43.08780 * 23 15 14 25 25 O 1.42903 * 109.46902 * 181.52979 * 24 23 15 26 26 C 1.53783 * 113.60971 * 174.28241 * 23 15 14 27 27 C 1.53787 * 87.17207 * 139.93990 * 26 23 15 28 28 C 1.53780 * 113.61373 * 271.77777 * 23 15 14 29 29 H 0.97003 * 120.00022 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46842 * 60.00617 * 9 7 2 31 31 H 1.09001 * 109.47139 * 300.00029 * 9 7 2 32 32 H 0.97000 * 120.00264 * 359.97438 * 10 9 7 33 33 H 1.09008 * 109.46814 * 60.00654 * 13 11 10 34 34 H 1.08992 * 109.47691 * 300.00548 * 13 11 10 35 35 H 1.00902 * 110.99648 * 61.06369 * 14 13 11 36 36 H 1.09000 * 110.51474 * 335.84123 * 19 17 15 37 37 H 1.09009 * 110.50517 * 98.54603 * 19 17 15 38 38 H 1.09001 * 110.50652 * 118.65268 * 20 19 17 39 39 H 1.09004 * 110.50940 * 241.21476 * 20 19 17 40 40 H 1.08993 * 110.37520 * 142.80583 * 21 20 19 41 41 H 1.09003 * 110.37103 * 265.03970 * 21 20 19 42 42 H 1.08996 * 109.46863 * 301.53031 * 24 23 15 43 43 H 1.08992 * 109.47060 * 61.52777 * 24 23 15 44 44 H 0.96702 * 113.99531 * 180.02562 * 25 24 23 45 45 H 1.09004 * 113.61636 * 254.52261 * 26 23 15 46 46 H 1.08999 * 113.62218 * 25.34874 * 26 23 15 47 47 H 1.08997 * 113.61259 * 89.15863 * 27 26 23 48 48 H 1.08998 * 113.61344 * 220.06276 * 27 26 23 49 49 H 1.08999 * 113.61396 * 334.56513 * 28 23 15 50 50 H 1.09001 * 113.61566 * 105.39120 * 28 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7328 -6.0288 -0.0006 14 7 1.9983 -7.3011 0.0008 15 6 2.9184 -8.4400 0.1202 16 1 3.8746 -8.1841 -0.3359 17 6 2.3217 -9.6547 -0.5935 18 1 2.9881 -10.5124 -0.5028 19 6 2.0620 -9.3302 -2.0813 20 6 0.7431 -10.0685 -2.4019 21 6 0.3615 -10.7510 -1.0698 22 8 1.0212 -9.9687 -0.0495 23 6 3.1309 -8.7708 1.5988 24 6 1.8326 -8.7380 2.4077 25 8 2.1184 -9.0212 3.7789 26 6 3.9701 -10.0383 1.8319 27 6 4.6505 -9.2834 2.9862 28 6 4.2826 -7.9842 2.2467 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 3.1565 -3.4355 -0.0009 33 1 3.3601 -5.9710 0.8890 34 1 3.3589 -5.9713 -0.8909 35 1 1.4219 -7.3867 -0.8230 36 1 1.9427 -8.2561 -2.2229 37 1 2.8733 -9.7105 -2.7023 38 1 -0.0282 -9.3592 -2.7021 39 1 0.9017 -10.8119 -3.1832 40 1 -0.7189 -10.7281 -0.9275 41 1 0.7241 -11.7788 -1.0526 42 1 1.3795 -7.7500 2.3275 43 1 1.1429 -9.4867 2.0182 44 1 1.3394 -9.0175 4.3519 45 1 3.3830 -10.8969 2.1579 46 1 4.6432 -10.2741 1.0077 47 1 4.1424 -9.3999 3.9435 48 1 5.7239 -9.4609 3.0512 49 1 5.0422 -7.6577 1.5364 50 1 3.9477 -7.1836 2.9063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878873006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:18 Heat of formation + Delta-G solvation = -134.792642 kcal Electronic energy + Delta-G solvation = -29512.266116 eV Core-core repulsion = 25538.996429 eV Total energy + Delta-G solvation = -3973.269687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.55729 -40.31596 -39.69334 -36.81374 -36.26188 -35.86720 -34.33115 -32.92180 -31.77833 -29.57812 -28.90408 -27.11971 -26.47715 -25.91302 -24.30830 -23.42100 -22.30213 -21.36927 -21.30253 -19.34301 -19.00227 -18.26770 -17.87509 -17.45951 -17.00682 -16.97140 -16.69755 -16.19821 -16.07507 -15.98202 -15.43113 -15.36710 -15.10383 -14.64253 -14.52784 -14.41631 -14.07723 -13.85801 -13.51896 -13.34158 -13.15657 -13.01559 -12.90586 -12.87755 -12.74666 -12.56866 -12.34333 -12.22289 -12.11993 -12.03321 -11.53708 -11.45771 -11.25373 -11.10958 -10.81642 -10.78214 -10.67226 -10.55053 -10.48038 -9.80673 -9.26324 -8.29423 -6.45994 1.42743 1.43985 1.57461 1.81998 2.29148 2.49496 2.92043 3.05503 3.28839 3.44410 3.45941 3.75179 3.89210 3.94993 3.99259 4.00786 4.07518 4.12803 4.26271 4.31057 4.37956 4.43031 4.50553 4.55188 4.74073 4.81572 4.87596 4.88649 4.94847 4.97744 4.98845 5.09609 5.09894 5.12011 5.12907 5.19366 5.23953 5.24524 5.32587 5.49648 5.57380 5.69950 5.77182 5.85288 5.91216 6.13193 6.39327 6.65748 6.96456 6.98758 7.23778 7.54489 8.83066 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.002935 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.912066 B = 9538.436876 C =10590.887574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.268 3.732 10 N -0.710 5.710 11 C 0.493 3.507 12 O -0.590 6.590 13 C 0.055 3.945 14 N -0.673 5.673 15 C 0.111 3.889 16 H 0.086 0.914 17 C 0.074 3.926 18 H 0.093 0.907 19 C -0.157 4.157 20 C -0.151 4.151 21 C 0.037 3.963 22 O -0.376 6.376 23 C -0.060 4.060 24 C 0.113 3.887 25 O -0.584 6.584 26 C -0.116 4.116 27 C -0.132 4.132 28 C -0.132 4.132 29 H 0.268 0.732 30 H -0.013 1.013 31 H -0.017 1.017 32 H 0.407 0.593 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.346 0.654 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.055 0.945 44 H 0.383 0.617 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.435 -24.897 -1.961 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.145 3.855 10 N -0.361 5.361 11 C 0.280 3.720 12 O -0.470 6.470 13 C -0.077 4.077 14 N -0.308 5.308 15 C 0.001 3.999 16 H 0.104 0.896 17 C 0.016 3.984 18 H 0.111 0.889 19 C -0.195 4.195 20 C -0.189 4.189 21 C -0.039 4.039 22 O -0.295 6.295 23 C -0.061 4.061 24 C 0.036 3.964 25 O -0.391 6.391 26 C -0.154 4.154 27 C -0.169 4.169 28 C -0.170 4.170 29 H 0.077 0.923 30 H 0.005 0.995 31 H 0.001 0.999 32 H 0.243 0.757 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.168 0.832 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.232 0.768 45 H 0.077 0.923 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.087 0.913 49 H 0.109 0.891 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.809 -24.884 -1.334 27.163 hybrid contribution -0.370 1.303 -0.737 1.542 sum 10.440 -23.581 -2.071 25.872 Atomic orbital electron populations 1.70151 1.08308 1.28468 1.50102 1.26082 0.95779 1.03959 0.93893 0.85105 0.79124 0.77286 0.77659 1.17547 1.20403 1.20546 1.21656 0.94308 0.90565 1.52671 0.89781 1.18495 0.88702 0.84447 0.93847 1.46185 1.11081 1.05566 1.73274 1.21434 0.89992 0.84846 0.75724 1.90642 1.19328 1.85371 1.51668 1.21839 0.93968 0.87509 1.04380 1.59954 1.23040 0.99606 1.48167 1.21682 0.94734 0.88829 0.94607 0.89644 1.23301 0.86615 0.96797 0.91651 0.88914 1.23072 0.99060 1.01104 0.96229 1.22900 0.97116 1.00326 0.98570 1.23531 0.98539 0.95176 0.86696 1.89248 1.28018 1.72503 1.39780 1.21700 0.93434 0.97920 0.93040 1.21612 0.95605 0.98836 0.80344 1.86391 1.38316 1.94468 1.19953 1.22859 0.98068 0.95725 0.98721 1.22809 0.99821 0.95725 0.98538 1.23028 0.97453 0.97017 0.99478 0.92286 0.99542 0.99905 0.75714 0.86960 0.89598 0.83162 0.91986 0.88177 0.91776 0.88649 0.89549 0.90959 0.95163 0.92717 0.76842 0.92253 0.88775 0.90015 0.91299 0.89147 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.59 29.54 68.60 2.03 44.61 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -30.42 9.28 25.60 0.24 -30.18 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.97 5.43 85.63 0.46 15.44 16 10 N -0.71 -30.29 5.55 -466.80 -2.59 -32.88 16 11 C 0.49 19.94 7.88 87.66 0.69 20.63 16 12 O -0.59 -29.92 16.31 -3.03 -0.05 -29.97 16 13 C 0.06 1.48 5.93 85.56 0.51 1.99 16 14 N -0.67 -17.77 4.50 -495.59 -2.23 -20.00 16 15 C 0.11 2.13 1.69 44.92 0.08 2.21 16 16 H 0.09 1.29 7.47 -2.39 -0.02 1.27 16 17 C 0.07 1.25 2.72 31.10 0.08 1.33 16 18 H 0.09 1.24 7.15 -2.39 -0.02 1.23 16 19 C -0.16 -2.29 6.27 31.61 0.20 -2.09 16 20 C -0.15 -2.17 7.09 31.61 0.22 -1.95 16 21 C 0.04 0.60 7.63 72.48 0.55 1.15 16 22 O -0.38 -8.21 8.63 -148.98 -1.29 -9.49 16 23 C -0.06 -1.26 0.76 -51.65 -0.04 -1.30 16 24 C 0.11 2.96 5.91 71.98 0.43 3.39 16 25 O -0.58 -13.95 10.55 -148.98 -1.57 -15.52 16 26 C -0.12 -2.02 5.98 31.12 0.19 -1.84 16 27 C -0.13 -2.54 7.55 31.18 0.24 -2.30 16 28 C -0.13 -2.73 5.74 31.18 0.18 -2.55 16 29 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 30 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H 0.41 14.22 8.32 -92.71 -0.77 13.44 16 33 H 0.11 2.73 6.79 -2.38 -0.02 2.72 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.35 9.86 6.06 -89.69 -0.54 9.31 16 36 H 0.06 1.10 6.12 -2.39 -0.01 1.09 16 37 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.03 0.99 7.45 -2.39 -0.02 0.97 16 43 H 0.05 1.50 5.96 -2.39 -0.01 1.48 16 44 H 0.38 6.70 9.12 -74.06 -0.68 6.03 16 45 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 46 H 0.09 1.22 7.85 -2.39 -0.02 1.20 16 47 H 0.08 1.88 6.17 -2.39 -0.01 1.86 16 48 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 49 H 0.09 1.50 7.89 -2.39 -0.02 1.49 16 50 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -75.85 386.73 -1.96 -77.81 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -1.03 Total: 37.47 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 4.48 Total: 4.52 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -4.54 Total: -109.43 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -2.91 Total: -54.98 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -75.85 -1.96 -77.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878873006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.983 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds